data_1D14 # _entry.id 1D14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D14 pdb_00001d14 10.2210/pdb1d14/pdb RCSB DDFP21 ? ? WWPDB D_1000172619 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1990-10-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.occupancy' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D14 _pdbx_database_status.recvd_initial_deposition_date 1989-10-20 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, L.D.' 1 'Egli, M.' 2 'Ughetto, G.' 3 'Van Der Marel, G.A.' 4 'Van Boom, J.H.' 5 'Quigley, G.J.' 6 'Wang, A.H.-J.' 7 'Rich, A.' 8 'Frederick, C.A.' 9 # _citation.id primary _citation.title 'Structure of 11-deoxydaunomycin bound to DNA containing a phosphorothioate.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 215 _citation.page_first 313 _citation.page_last 320 _citation.year 1990 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2152325 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(05)80349-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Williams, L.D.' 1 ? primary 'Egli, M.' 2 ? primary 'Ughetto, G.' 3 ? primary 'van der Marel, G.A.' 4 ? primary 'van Boom, J.H.' 5 ? primary 'Quigley, G.J.' 6 ? primary 'Wang, A.H.' 7 ? primary 'Rich, A.' 8 ? primary 'Frederick, C.A.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3') ; 1825.282 1 ? ? ? ? 2 non-polymer syn 6-DEOXYDAUNOMYCIN 511.520 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(AS)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 6-DEOXYDAUNOMYCIN DM3 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 AS n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AS 'DNA linking' n ;2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE ; ? 'C10 H14 N5 O5 P S' 347.287 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM3 non-polymer . 6-DEOXYDAUNOMYCIN ? 'C27 H29 N O9' 511.520 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 AS 4 4 4 AS +A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM3 1 7 7 DM3 DM3 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D14 _cell.length_a 17.730 _cell.length_b 19.130 _cell.length_c 26.360 _cell.angle_alpha 90.00 _cell.angle_beta 98.01 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D14 _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 # _exptl.entry_id 1D14 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.28 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 283.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D14 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.500 _reflns.number_obs 2129 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D14 _refine.ls_number_reflns_obs 2129 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 119 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 194 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1D14 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D14 _struct.title 'STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D14 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D14 _struct_ref.pdbx_db_accession 1D14 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D14 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D14 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 28.1136824005 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 52.2056512049 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A AS 4 P ? ? A DT 3 A AS 4 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale2 covale both ? A AS 4 "O3'" ? ? ? 1_555 A DC 5 P ? ? A AS 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.575 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A AS 4 N1 ? ? A DT 3 A AS 4 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A AS 4 N6 ? ? A DT 3 A AS 4 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A AS 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A AS 4 A DT 3 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A AS 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A AS 4 A DT 3 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM3 7 ? 12 'BINDING SITE FOR RESIDUE DM3 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 12 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 12 DT A 3 ? DT A 3 . ? 1_455 ? 4 AC1 12 DT A 3 ? DT A 3 . ? 1_555 ? 5 AC1 12 AS A 4 ? AS A 4 . ? 1_555 ? 6 AC1 12 HOH C . ? HOH A 12 . ? 1_555 ? 7 AC1 12 HOH C . ? HOH A 13 . ? 1_555 ? 8 AC1 12 HOH C . ? HOH A 15 . ? 1_555 ? 9 AC1 12 HOH C . ? HOH A 17 . ? 1_555 ? 10 AC1 12 HOH C . ? HOH A 26 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 29 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 39 . ? 1_655 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 43 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 43 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_857 _pdbx_validate_symm_contact.dist 1.95 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.628 1.519 0.109 0.010 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? 1.317 1.397 -0.080 0.010 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.401 1.335 0.066 0.007 N 4 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.658 1.593 0.065 0.010 N 5 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.383 1.419 -0.036 0.006 N 6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.313 1.391 -0.078 0.007 N 7 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.329 1.374 -0.045 0.007 N 8 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.200 1.341 -0.141 0.010 N 9 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? 1.509 1.420 0.089 0.011 N 10 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.367 1.419 -0.052 0.006 N 11 1 P A DC 5 ? ? OP1 A DC 5 ? ? 1.360 1.485 -0.125 0.017 N 12 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.698 1.593 0.105 0.010 N 13 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.563 1.512 0.051 0.007 N 14 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.332 1.418 -0.086 0.012 N 15 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.366 1.446 -0.080 0.010 N 16 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.406 1.367 0.039 0.006 N 17 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.405 1.335 0.070 0.007 N 18 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.659 1.593 0.066 0.010 N 19 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.622 1.529 0.093 0.010 N 20 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.510 1.420 0.090 0.011 N 21 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.312 1.373 -0.061 0.008 N 22 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.332 1.391 -0.059 0.007 N 23 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.225 1.341 -0.116 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.06 102.40 -5.34 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 96.34 108.00 -11.66 0.70 N 3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.24 119.90 4.34 0.50 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.68 121.90 -5.22 0.40 N 5 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 111.52 119.70 -8.18 1.20 Y 6 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 108.64 120.90 -12.26 1.60 N 7 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 102.06 104.50 -2.44 0.40 N 8 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.55 102.40 -7.85 0.80 N 9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.57 108.30 3.26 0.30 N 10 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 114.23 118.80 -4.57 0.60 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.82 111.50 7.32 0.50 N 12 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 108.60 113.10 -4.50 0.50 N 13 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 111.53 106.40 5.13 0.40 N 14 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 102.49 105.40 -2.91 0.40 N 15 1 N3 A DG 2 ? ? C4 A DG 2 ? ? N9 A DG 2 ? ? 130.99 126.00 4.99 0.60 N 16 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 134.20 130.40 3.80 0.60 N 17 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 123.80 116.20 7.60 0.90 N 18 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 112.60 119.90 -7.30 0.70 N 19 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.82 128.60 -7.78 0.60 N 20 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 128.64 119.70 8.94 1.20 Y 21 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 119.65 110.70 8.95 1.20 N 22 1 P A DT 3 ? ? "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? 106.84 120.90 -14.06 1.60 N 23 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 110.39 106.00 4.39 0.60 N 24 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 98.32 108.00 -9.68 0.70 N 25 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.61 104.50 -2.89 0.40 N 26 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 115.47 110.30 5.17 0.70 N 27 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 120.35 108.30 12.05 0.30 N 28 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.25 119.90 3.35 0.50 N 29 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 117.11 121.90 -4.79 0.40 N 30 1 C4 A DC 5 ? ? C5 A DC 5 ? ? C6 A DC 5 ? ? 120.57 117.40 3.17 0.50 N 31 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 128.95 120.20 8.75 0.70 N 32 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 126.95 119.70 7.25 1.20 Y 33 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 88.85 105.70 -16.85 0.90 N 34 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 128.79 123.90 4.89 0.60 N 35 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 107.77 111.90 -4.13 0.50 N 36 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.74 111.50 3.24 0.50 N 37 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 123.17 116.20 6.97 0.90 N 38 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 108.04 119.90 -11.86 0.70 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id AS _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id AS _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 44 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AS P P N N 1 AS OP1 O N N 2 AS S2P S N N 3 AS OP3 O N N 4 AS "O5'" O N N 5 AS "C5'" C N N 6 AS "C4'" C N R 7 AS "O4'" O N N 8 AS "C3'" C N S 9 AS "O3'" O N N 10 AS "C2'" C N N 11 AS "C1'" C N R 12 AS N9 N Y N 13 AS C8 C Y N 14 AS N7 N Y N 15 AS C5 C Y N 16 AS C6 C Y N 17 AS N6 N N N 18 AS N1 N Y N 19 AS C2 C Y N 20 AS N3 N Y N 21 AS C4 C Y N 22 AS HOP1 H N N 23 AS HOP3 H N N 24 AS "H5'" H N N 25 AS "H5''" H N N 26 AS "H4'" H N N 27 AS "H3'" H N N 28 AS "HO3'" H N N 29 AS "H2'" H N N 30 AS "H2''" H N N 31 AS "H1'" H N N 32 AS H8 H N N 33 AS HN61 H N N 34 AS HN62 H N N 35 AS H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM3 C1 C Y N 108 DM3 C2 C Y N 109 DM3 C3 C Y N 110 DM3 C4 C Y N 111 DM3 O4 O N N 112 DM3 C5 C Y N 113 DM3 C6 C N N 114 DM3 O6 O N N 115 DM3 C7 C Y N 116 DM3 C8 C Y N 117 DM3 O8 O N N 118 DM3 C9 C Y N 119 DM3 C10 C N S 120 DM3 O10 O N N 121 DM3 C11 C N N 122 DM3 C12 C N S 123 DM3 O12 O N N 124 DM3 C13 C N N 125 DM3 O13 O N N 126 DM3 C14 C N N 127 DM3 C15 C N N 128 DM3 C16 C Y N 129 DM3 C17 C Y N 130 DM3 C18 C Y N 131 DM3 C19 C N N 132 DM3 O19 O N N 133 DM3 C20 C Y N 134 DM3 C21 C N N 135 DM3 "C1'" C N R 136 DM3 "C2'" C N N 137 DM3 "C3'" C N S 138 DM3 "N3'" N N N 139 DM3 "C4'" C N S 140 DM3 "O4'" O N N 141 DM3 "C5'" C N S 142 DM3 "O5'" O N N 143 DM3 "C6'" C N N 144 DM3 H1 H N N 145 DM3 H2 H N N 146 DM3 H3 H N N 147 DM3 HO8 H N N 148 DM3 H10 H N N 149 DM3 H111 H N N 150 DM3 H112 H N N 151 DM3 HO12 H N N 152 DM3 H141 H N N 153 DM3 H142 H N N 154 DM3 H143 H N N 155 DM3 H151 H N N 156 DM3 H152 H N N 157 DM3 H17 H N N 158 DM3 H211 H N N 159 DM3 H212 H N N 160 DM3 H213 H N N 161 DM3 "H1'" H N N 162 DM3 "H2'1" H N N 163 DM3 "H2'2" H N N 164 DM3 "H3'" H N N 165 DM3 "HN'1" H N N 166 DM3 "HN'2" H N N 167 DM3 "H4'" H N N 168 DM3 "HO4'" H N N 169 DM3 "H5'" H N N 170 DM3 "H6'1" H N N 171 DM3 "H6'2" H N N 172 DM3 "H6'3" H N N 173 DT OP3 O N N 174 DT P P N N 175 DT OP1 O N N 176 DT OP2 O N N 177 DT "O5'" O N N 178 DT "C5'" C N N 179 DT "C4'" C N R 180 DT "O4'" O N N 181 DT "C3'" C N S 182 DT "O3'" O N N 183 DT "C2'" C N N 184 DT "C1'" C N R 185 DT N1 N N N 186 DT C2 C N N 187 DT O2 O N N 188 DT N3 N N N 189 DT C4 C N N 190 DT O4 O N N 191 DT C5 C N N 192 DT C7 C N N 193 DT C6 C N N 194 DT HOP3 H N N 195 DT HOP2 H N N 196 DT "H5'" H N N 197 DT "H5''" H N N 198 DT "H4'" H N N 199 DT "H3'" H N N 200 DT "HO3'" H N N 201 DT "H2'" H N N 202 DT "H2''" H N N 203 DT "H1'" H N N 204 DT H3 H N N 205 DT H71 H N N 206 DT H72 H N N 207 DT H73 H N N 208 DT H6 H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AS P OP1 sing N N 1 AS P S2P doub N N 2 AS P OP3 sing N N 3 AS P "O5'" sing N N 4 AS OP1 HOP1 sing N N 5 AS OP3 HOP3 sing N N 6 AS "O5'" "C5'" sing N N 7 AS "C5'" "C4'" sing N N 8 AS "C5'" "H5'" sing N N 9 AS "C5'" "H5''" sing N N 10 AS "C4'" "O4'" sing N N 11 AS "C4'" "C3'" sing N N 12 AS "C4'" "H4'" sing N N 13 AS "O4'" "C1'" sing N N 14 AS "C3'" "O3'" sing N N 15 AS "C3'" "C2'" sing N N 16 AS "C3'" "H3'" sing N N 17 AS "O3'" "HO3'" sing N N 18 AS "C2'" "C1'" sing N N 19 AS "C2'" "H2'" sing N N 20 AS "C2'" "H2''" sing N N 21 AS "C1'" N9 sing N N 22 AS "C1'" "H1'" sing N N 23 AS N9 C8 sing Y N 24 AS N9 C4 sing Y N 25 AS C8 N7 doub Y N 26 AS C8 H8 sing N N 27 AS N7 C5 sing Y N 28 AS C5 C6 sing Y N 29 AS C5 C4 doub Y N 30 AS C6 N6 sing N N 31 AS C6 N1 doub Y N 32 AS N6 HN61 sing N N 33 AS N6 HN62 sing N N 34 AS N1 C2 sing Y N 35 AS C2 N3 doub Y N 36 AS C2 H2 sing N N 37 AS N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM3 C1 C2 doub Y N 113 DM3 C1 C20 sing Y N 114 DM3 C1 H1 sing N N 115 DM3 C2 C3 sing Y N 116 DM3 C2 H2 sing N N 117 DM3 C3 C4 doub Y N 118 DM3 C3 H3 sing N N 119 DM3 C4 O4 sing N N 120 DM3 C4 C5 sing Y N 121 DM3 O4 C21 sing N N 122 DM3 C5 C6 sing N N 123 DM3 C5 C20 doub Y N 124 DM3 C6 O6 doub N N 125 DM3 C6 C7 sing N N 126 DM3 C7 C8 doub Y N 127 DM3 C7 C18 sing Y N 128 DM3 C8 O8 sing N N 129 DM3 C8 C9 sing Y N 130 DM3 O8 HO8 sing N N 131 DM3 C9 C10 sing N N 132 DM3 C9 C16 doub Y N 133 DM3 C10 O10 sing N N 134 DM3 C10 C11 sing N N 135 DM3 C10 H10 sing N N 136 DM3 O10 "C1'" sing N N 137 DM3 C11 C12 sing N N 138 DM3 C11 H111 sing N N 139 DM3 C11 H112 sing N N 140 DM3 C12 O12 sing N N 141 DM3 C12 C13 sing N N 142 DM3 C12 C15 sing N N 143 DM3 O12 HO12 sing N N 144 DM3 C13 O13 doub N N 145 DM3 C13 C14 sing N N 146 DM3 C14 H141 sing N N 147 DM3 C14 H142 sing N N 148 DM3 C14 H143 sing N N 149 DM3 C15 C16 sing N N 150 DM3 C15 H151 sing N N 151 DM3 C15 H152 sing N N 152 DM3 C16 C17 sing Y N 153 DM3 C17 C18 doub Y N 154 DM3 C17 H17 sing N N 155 DM3 C18 C19 sing N N 156 DM3 C19 O19 doub N N 157 DM3 C19 C20 sing N N 158 DM3 C21 H211 sing N N 159 DM3 C21 H212 sing N N 160 DM3 C21 H213 sing N N 161 DM3 "C1'" "C2'" sing N N 162 DM3 "C1'" "O5'" sing N N 163 DM3 "C1'" "H1'" sing N N 164 DM3 "C2'" "C3'" sing N N 165 DM3 "C2'" "H2'1" sing N N 166 DM3 "C2'" "H2'2" sing N N 167 DM3 "C3'" "N3'" sing N N 168 DM3 "C3'" "C4'" sing N N 169 DM3 "C3'" "H3'" sing N N 170 DM3 "N3'" "HN'1" sing N N 171 DM3 "N3'" "HN'2" sing N N 172 DM3 "C4'" "O4'" sing N N 173 DM3 "C4'" "C5'" sing N N 174 DM3 "C4'" "H4'" sing N N 175 DM3 "O4'" "HO4'" sing N N 176 DM3 "C5'" "O5'" sing N N 177 DM3 "C5'" "C6'" sing N N 178 DM3 "C5'" "H5'" sing N N 179 DM3 "C6'" "H6'1" sing N N 180 DM3 "C6'" "H6'2" sing N N 181 DM3 "C6'" "H6'3" sing N N 182 DT OP3 P sing N N 183 DT OP3 HOP3 sing N N 184 DT P OP1 doub N N 185 DT P OP2 sing N N 186 DT P "O5'" sing N N 187 DT OP2 HOP2 sing N N 188 DT "O5'" "C5'" sing N N 189 DT "C5'" "C4'" sing N N 190 DT "C5'" "H5'" sing N N 191 DT "C5'" "H5''" sing N N 192 DT "C4'" "O4'" sing N N 193 DT "C4'" "C3'" sing N N 194 DT "C4'" "H4'" sing N N 195 DT "O4'" "C1'" sing N N 196 DT "C3'" "O3'" sing N N 197 DT "C3'" "C2'" sing N N 198 DT "C3'" "H3'" sing N N 199 DT "O3'" "HO3'" sing N N 200 DT "C2'" "C1'" sing N N 201 DT "C2'" "H2'" sing N N 202 DT "C2'" "H2''" sing N N 203 DT "C1'" N1 sing N N 204 DT "C1'" "H1'" sing N N 205 DT N1 C2 sing N N 206 DT N1 C6 sing N N 207 DT C2 O2 doub N N 208 DT C2 N3 sing N N 209 DT N3 C4 sing N N 210 DT N3 H3 sing N N 211 DT C4 O4 doub N N 212 DT C4 C5 sing N N 213 DT C5 C7 sing N N 214 DT C5 C6 doub N N 215 DT C7 H71 sing N N 216 DT C7 H72 sing N N 217 DT C7 H73 sing N N 218 DT C6 H6 sing N N 219 HOH O H1 sing N N 220 HOH O H2 sing N N 221 # _ndb_struct_conf_na.entry_id 1D14 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 2_757 0.213 -0.288 -0.127 6.807 3.916 1.685 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 2_757 -0.394 -0.212 -0.363 -15.981 -0.477 2.481 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DT 3 1_555 A AS 4 2_757 -0.218 -0.152 0.185 -1.279 -7.390 0.613 3 A_DT3:AS4_A A 3 ? A 4 ? 20 1 1 A AS 4 1_555 A DT 3 2_757 0.218 -0.152 0.185 1.279 -7.390 0.613 4 A_AS4:DT3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 2_757 0.394 -0.212 -0.363 15.981 -0.477 2.481 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 2_757 -0.213 -0.288 -0.127 -6.807 3.916 1.685 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 2_757 A DG 2 1_555 A DC 5 2_757 0.981 1.485 7.027 0.252 -2.886 36.287 3.233 -1.495 6.899 -4.624 -0.404 36.398 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 2_757 A DT 3 1_555 A AS 4 2_757 -0.939 -0.099 3.042 -5.302 -3.161 31.480 0.364 0.788 3.149 -5.756 9.656 32.065 2 AA_DG2DT3:AS4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DT 3 1_555 A AS 4 2_757 A AS 4 1_555 A DT 3 2_757 0.000 -0.591 3.205 0.000 1.235 42.364 -0.940 0.000 3.187 1.708 0.000 42.381 3 AA_DT3AS4:DT3AS4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A AS 4 1_555 A DT 3 2_757 A DC 5 1_555 A DG 2 2_757 0.939 -0.099 3.042 5.302 -3.161 31.480 0.364 -0.788 3.149 -5.756 -9.656 32.065 4 AA_AS4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 2_757 A DG 6 1_555 A DC 1 2_757 -0.981 1.485 7.027 -0.252 -2.886 36.287 3.233 1.495 6.899 -4.624 0.404 36.398 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1D14 _atom_sites.fract_transf_matrix[1][1] 0.056402 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007937 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.052274 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038310 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 12.518 26.434 35.216 1.00 29.60 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 13.345 27.165 36.213 1.00 27.71 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 14.279 26.291 37.006 1.00 25.98 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 13.595 25.234 37.689 1.00 23.98 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 15.354 25.499 36.162 1.00 25.78 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 16.589 25.703 36.885 1.00 26.99 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 14.904 24.059 36.104 1.00 23.42 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 14.182 24.016 37.563 1.00 20.07 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 12.918 23.233 37.471 1.00 17.06 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 13.046 21.926 37.569 1.00 15.05 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.124 21.433 37.742 1.00 15.38 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 11.937 21.172 37.467 1.00 14.97 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 10.653 21.685 37.241 1.00 15.12 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 9.569 20.852 37.151 1.00 14.71 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.541 23.079 37.139 1.00 16.12 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 11.683 23.831 37.270 1.00 16.22 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 17.562 26.687 36.109 1.00 28.15 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 18.731 26.862 36.998 1.00 29.04 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 16.873 27.750 35.507 1.00 28.37 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 18.097 25.711 34.880 1.00 26.78 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 18.691 24.577 35.437 1.00 24.63 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 18.907 23.576 34.353 1.00 23.48 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 17.644 22.971 33.927 1.00 21.88 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 19.454 24.182 33.003 1.00 23.69 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 20.198 23.116 32.532 1.00 25.48 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 18.157 24.479 32.164 1.00 21.41 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 17.489 23.092 32.472 1.00 18.50 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 16.123 23.144 32.096 1.00 15.75 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 15.442 24.279 31.974 1.00 14.76 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 14.204 23.991 31.562 1.00 14.82 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 14.165 22.632 31.420 1.00 14.15 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 13.181 21.714 30.986 1.00 12.82 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 11.996 22.110 30.693 1.00 13.61 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.460 20.431 31.005 1.00 12.14 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.662 19.975 31.349 1.00 11.34 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 14.954 18.811 31.369 1.00 10.90 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 15.657 20.750 31.705 1.00 13.46 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 15.359 22.059 31.750 1.00 13.57 ? 2 DG A C4 1 ATOM 39 P P . DT A 1 3 ? 21.790 23.051 32.217 1.00 26.39 ? 3 DT A P 1 ATOM 40 O OP1 . DT A 1 3 ? 22.326 23.404 33.489 1.00 27.10 ? 3 DT A OP1 1 ATOM 41 O OP2 . DT A 1 3 ? 21.890 23.875 31.013 1.00 26.80 ? 3 DT A OP2 1 ATOM 42 O "O5'" . DT A 1 3 ? 22.094 21.469 32.129 1.00 24.35 ? 3 DT A "O5'" 1 ATOM 43 C "C5'" . DT A 1 3 ? 21.641 21.029 30.837 1.00 21.78 ? 3 DT A "C5'" 1 ATOM 44 C "C4'" . DT A 1 3 ? 21.074 19.635 31.028 1.00 19.68 ? 3 DT A "C4'" 1 ATOM 45 O "O4'" . DT A 1 3 ? 19.632 19.746 31.004 1.00 18.09 ? 3 DT A "O4'" 1 ATOM 46 C "C3'" . DT A 1 3 ? 21.552 18.701 29.927 1.00 18.81 ? 3 DT A "C3'" 1 ATOM 47 O "O3'" . DT A 1 3 ? 21.686 17.398 30.318 1.00 19.77 ? 3 DT A "O3'" 1 ATOM 48 C "C2'" . DT A 1 3 ? 20.421 18.780 28.863 1.00 17.55 ? 3 DT A "C2'" 1 ATOM 49 C "C1'" . DT A 1 3 ? 19.202 19.020 29.753 1.00 15.82 ? 3 DT A "C1'" 1 ATOM 50 N N1 . DT A 1 3 ? 18.176 20.017 29.263 1.00 13.43 ? 3 DT A N1 1 ATOM 51 C C2 . DT A 1 3 ? 17.019 19.372 28.844 1.00 12.58 ? 3 DT A C2 1 ATOM 52 O O2 . DT A 1 3 ? 16.890 18.178 28.863 1.00 13.21 ? 3 DT A O2 1 ATOM 53 N N3 . DT A 1 3 ? 16.029 20.164 28.422 1.00 12.42 ? 3 DT A N3 1 ATOM 54 C C4 . DT A 1 3 ? 16.057 21.531 28.350 1.00 12.87 ? 3 DT A C4 1 ATOM 55 O O4 . DT A 1 3 ? 15.057 22.214 27.981 1.00 12.86 ? 3 DT A O4 1 ATOM 56 C C5 . DT A 1 3 ? 17.292 22.157 28.743 1.00 13.54 ? 3 DT A C5 1 ATOM 57 C C7 . DT A 1 3 ? 17.418 23.640 28.701 1.00 13.57 ? 3 DT A C7 1 ATOM 58 C C6 . DT A 1 3 ? 18.293 21.362 29.207 1.00 13.19 ? 3 DT A C6 1 HETATM 59 P P . AS A 1 4 ? 22.251 16.233 29.453 1.00 22.11 ? 4 AS A P 1 HETATM 60 O OP1 . AS A 1 4 ? 22.227 14.994 30.130 1.00 20.29 ? 4 AS A OP1 1 HETATM 61 S S2P . AS A 1 4 ? 23.517 16.773 28.574 1.00 26.04 ? 4 AS A S2P 1 HETATM 62 O "O5'" . AS A 1 4 ? 20.952 15.993 28.385 1.00 20.06 ? 4 AS A "O5'" 1 HETATM 63 C "C5'" . AS A 1 4 ? 21.146 14.967 27.428 1.00 18.59 ? 4 AS A "C5'" 1 HETATM 64 C "C4'" . AS A 1 4 ? 19.722 14.515 27.049 1.00 17.51 ? 4 AS A "C4'" 1 HETATM 65 O "O4'" . AS A 1 4 ? 18.733 15.575 27.127 1.00 15.83 ? 4 AS A "O4'" 1 HETATM 66 C "C3'" . AS A 1 4 ? 19.679 13.968 25.544 1.00 17.65 ? 4 AS A "C3'" 1 HETATM 67 O "O3'" . AS A 1 4 ? 18.993 12.776 25.581 1.00 19.85 ? 4 AS A "O3'" 1 HETATM 68 C "C2'" . AS A 1 4 ? 19.067 15.082 24.861 1.00 15.07 ? 4 AS A "C2'" 1 HETATM 69 C "C1'" . AS A 1 4 ? 18.075 15.653 25.788 1.00 12.52 ? 4 AS A "C1'" 1 HETATM 70 N N9 . AS A 1 4 ? 17.836 17.033 25.618 1.00 10.52 ? 4 AS A N9 1 HETATM 71 C C8 . AS A 1 4 ? 18.583 18.058 25.785 1.00 8.97 ? 4 AS A C8 1 HETATM 72 N N7 . AS A 1 4 ? 18.045 19.230 25.579 1.00 9.74 ? 4 AS A N7 1 HETATM 73 C C5 . AS A 1 4 ? 16.769 18.873 25.208 1.00 9.34 ? 4 AS A C5 1 HETATM 74 C C6 . AS A 1 4 ? 15.669 19.733 24.812 1.00 8.44 ? 4 AS A C6 1 HETATM 75 N N6 . AS A 1 4 ? 15.671 21.055 24.754 1.00 9.48 ? 4 AS A N6 1 HETATM 76 N N1 . AS A 1 4 ? 14.584 19.025 24.516 1.00 9.17 ? 4 AS A N1 1 HETATM 77 C C2 . AS A 1 4 ? 14.527 17.705 24.583 1.00 7.82 ? 4 AS A C2 1 HETATM 78 N N3 . AS A 1 4 ? 15.474 16.799 24.889 1.00 9.77 ? 4 AS A N3 1 HETATM 79 C C4 . AS A 1 4 ? 16.589 17.549 25.202 1.00 9.26 ? 4 AS A C4 1 ATOM 80 P P . DC A 1 5 ? 19.318 11.653 24.526 1.00 20.74 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 18.683 10.496 24.856 1.00 20.52 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 20.739 11.840 24.102 1.00 22.16 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 18.421 12.189 23.188 1.00 21.15 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 17.025 12.074 23.116 1.00 20.30 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? 16.521 12.931 21.910 1.00 18.31 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 16.516 14.257 22.238 1.00 16.89 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? 17.323 12.942 20.565 1.00 19.32 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? 16.439 12.648 19.471 1.00 21.97 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? 17.957 14.291 20.508 1.00 17.45 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? 16.838 15.092 21.252 1.00 14.42 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? 17.348 16.424 21.552 1.00 12.77 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? 16.377 17.368 21.586 1.00 10.93 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? 15.226 17.032 21.420 1.00 12.29 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? 16.758 18.637 21.765 1.00 11.24 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? 18.088 19.014 22.016 1.00 10.02 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 18.255 20.342 22.206 1.00 10.80 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 19.041 18.008 22.012 1.00 10.81 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 18.692 16.755 21.801 1.00 11.33 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? 16.378 11.307 18.630 1.00 23.81 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 15.907 10.187 19.340 1.00 23.93 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 17.618 11.375 17.845 1.00 23.97 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 14.960 11.315 17.768 1.00 23.11 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 14.192 12.494 17.761 1.00 22.43 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 13.228 12.466 16.560 1.00 21.21 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 13.373 13.726 15.945 1.00 20.29 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 13.559 11.442 15.346 1.00 21.13 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 12.248 11.036 14.885 1.00 23.30 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 14.570 12.171 14.558 1.00 19.14 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 14.118 13.616 14.636 1.00 16.71 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 15.184 14.537 14.765 1.00 14.48 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 16.435 14.153 15.035 1.00 14.26 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 17.280 15.155 15.175 1.00 14.09 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 16.499 16.246 14.928 1.00 12.74 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 16.802 17.607 14.935 1.00 12.45 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 17.951 18.109 15.193 1.00 12.82 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 15.776 18.408 14.652 1.00 12.51 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 14.569 17.952 14.416 1.00 11.46 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 13.617 18.678 14.158 1.00 12.41 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 14.146 16.701 14.398 1.00 12.81 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 15.205 15.901 14.687 1.00 12.87 ? 6 DG A C4 1 HETATM 121 C C1 . DM3 B 2 . ? 9.002 21.100 33.532 1.00 12.65 ? 7 DM3 A C1 1 HETATM 122 C C2 . DM3 B 2 . ? 7.680 20.629 33.252 1.00 12.64 ? 7 DM3 A C2 1 HETATM 123 C C3 . DM3 B 2 . ? 7.394 19.282 33.174 1.00 12.83 ? 7 DM3 A C3 1 HETATM 124 C C4 . DM3 B 2 . ? 8.420 18.382 33.345 1.00 12.52 ? 7 DM3 A C4 1 HETATM 125 O O4 . DM3 B 2 . ? 8.168 17.010 33.262 1.00 14.79 ? 7 DM3 A O4 1 HETATM 126 C C5 . DM3 B 2 . ? 9.732 18.817 33.650 1.00 11.67 ? 7 DM3 A C5 1 HETATM 127 C C6 . DM3 B 2 . ? 10.789 17.952 33.814 1.00 10.41 ? 7 DM3 A C6 1 HETATM 128 O O6 . DM3 B 2 . ? 10.476 16.610 33.732 1.00 12.97 ? 7 DM3 A O6 1 HETATM 129 C C7 . DM3 B 2 . ? 12.086 18.417 34.093 1.00 10.93 ? 7 DM3 A C7 1 HETATM 130 C C8 . DM3 B 2 . ? 13.168 17.576 34.266 1.00 11.28 ? 7 DM3 A C8 1 HETATM 131 O O8 . DM3 B 2 . ? 13.135 16.191 34.194 1.00 13.49 ? 7 DM3 A O8 1 HETATM 132 C C9 . DM3 B 2 . ? 14.425 18.170 34.564 1.00 12.75 ? 7 DM3 A C9 1 HETATM 133 C C10 . DM3 B 2 . ? 15.523 17.148 34.725 1.00 14.88 ? 7 DM3 A C10 1 HETATM 134 O O10 . DM3 B 2 . ? 15.669 16.622 33.324 1.00 18.13 ? 7 DM3 A O10 1 HETATM 135 C C11 . DM3 B 2 . ? 16.792 17.814 35.233 1.00 15.29 ? 7 DM3 A C11 1 HETATM 136 C C12 . DM3 B 2 . ? 17.075 19.194 34.766 1.00 15.39 ? 7 DM3 A C12 1 HETATM 137 O O12 . DM3 B 2 . ? 17.326 19.016 33.273 1.00 16.87 ? 7 DM3 A O12 1 HETATM 138 C C13 . DM3 B 2 . ? 18.423 19.836 35.155 1.00 17.56 ? 7 DM3 A C13 1 HETATM 139 O O13 . DM3 B 2 . ? 18.298 20.856 36.045 1.00 20.08 ? 7 DM3 A O13 1 HETATM 140 C C14 . DM3 B 2 . ? 19.687 19.455 34.442 1.00 17.70 ? 7 DM3 A C14 1 HETATM 141 C C15 . DM3 B 2 . ? 15.960 20.185 34.958 1.00 13.38 ? 7 DM3 A C15 1 HETATM 142 C C16 . DM3 B 2 . ? 14.649 19.518 34.659 1.00 11.65 ? 7 DM3 A C16 1 HETATM 143 C C17 . DM3 B 2 . ? 13.571 20.381 34.452 1.00 11.16 ? 7 DM3 A C17 1 HETATM 144 C C18 . DM3 B 2 . ? 12.340 19.745 34.167 1.00 10.36 ? 7 DM3 A C18 1 HETATM 145 C C19 . DM3 B 2 . ? 11.275 20.644 33.981 1.00 11.06 ? 7 DM3 A C19 1 HETATM 146 O O19 . DM3 B 2 . ? 11.439 21.952 34.014 1.00 12.68 ? 7 DM3 A O19 1 HETATM 147 C C20 . DM3 B 2 . ? 9.997 20.141 33.720 1.00 10.99 ? 7 DM3 A C20 1 HETATM 148 C C21 . DM3 B 2 . ? 6.809 16.663 32.939 1.00 14.75 ? 7 DM3 A C21 1 HETATM 149 C "C1'" . DM3 B 2 . ? 16.091 15.299 33.003 1.00 18.97 ? 7 DM3 A "C1'" 1 HETATM 150 C "C2'" . DM3 B 2 . ? 15.820 14.997 31.529 1.00 19.58 ? 7 DM3 A "C2'" 1 HETATM 151 C "C3'" . DM3 B 2 . ? 16.874 15.676 30.696 1.00 19.93 ? 7 DM3 A "C3'" 1 HETATM 152 N "N3'" . DM3 B 2 . ? 16.658 15.042 29.333 1.00 19.92 ? 7 DM3 A "N3'" 1 HETATM 153 C "C4'" . DM3 B 2 . ? 18.372 15.415 31.105 1.00 19.92 ? 7 DM3 A "C4'" 1 HETATM 154 O "O4'" . DM3 B 2 . ? 18.616 14.002 30.939 1.00 20.02 ? 7 DM3 A "O4'" 1 HETATM 155 C "C5'" . DM3 B 2 . ? 18.532 15.801 32.566 1.00 20.17 ? 7 DM3 A "C5'" 1 HETATM 156 O "O5'" . DM3 B 2 . ? 17.478 15.017 33.332 1.00 20.42 ? 7 DM3 A "O5'" 1 HETATM 157 C "C6'" . DM3 B 2 . ? 19.918 15.575 33.133 1.00 19.99 ? 7 DM3 A "C6'" 1 HETATM 158 O O . HOH C 3 . ? 14.838 10.973 30.630 1.00 44.06 ? 8 HOH A O 1 HETATM 159 O O . HOH C 3 . ? 20.454 15.796 12.761 1.00 42.65 ? 9 HOH A O 1 HETATM 160 O O . HOH C 3 . ? 3.142 21.278 22.835 1.00 32.98 ? 10 HOH A O 1 HETATM 161 O O . HOH C 3 . ? 15.887 27.349 32.565 1.00 36.41 ? 11 HOH A O 1 HETATM 162 O O . HOH C 3 . ? 8.543 15.176 35.451 1.00 25.93 ? 12 HOH A O 1 HETATM 163 O O . HOH C 3 . ? 16.897 21.517 38.646 1.00 32.57 ? 13 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 7.246 17.224 36.889 1.00 33.00 ? 14 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 18.354 14.432 36.235 1.00 33.48 ? 15 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 8.719 24.891 34.075 1.00 63.61 ? 16 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 16.862 12.582 29.040 1.00 40.10 ? 17 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 22.751 17.785 36.048 1.00 37.06 ? 18 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 21.006 13.727 21.782 1.00 25.18 ? 19 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 18.042 22.155 41.792 1.00 55.71 ? 20 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 10.145 23.553 30.414 1.00 49.74 ? 21 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 20.248 7.416 29.153 1.00 40.63 ? 22 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 6.736 23.042 24.743 1.00 39.29 ? 23 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 1.857 21.510 25.847 1.00 34.92 ? 24 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 12.403 26.241 31.165 1.00 56.87 ? 25 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 21.209 12.972 30.133 1.00 35.55 ? 26 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 6.856 28.988 24.896 1.00 56.55 ? 27 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 17.240 11.334 32.922 1.00 49.97 ? 28 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 14.197 14.574 28.524 1.00 29.05 ? 29 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 18.089 10.579 28.702 1.00 51.39 ? 30 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 13.986 24.218 27.734 1.00 30.91 ? 31 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 10.544 24.022 27.196 1.00 51.49 ? 32 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 13.571 28.187 40.121 1.00 58.11 ? 33 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 22.180 28.918 31.754 1.00 57.44 ? 34 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 21.091 20.390 37.996 1.00 49.15 ? 35 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 3.318 12.223 19.392 1.00 38.96 ? 36 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 19.613 29.929 34.392 1.00 56.57 ? 37 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 17.571 7.946 29.361 1.00 48.39 ? 38 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 4.673 14.034 33.956 1.00 57.83 ? 39 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 15.220 29.155 26.845 1.00 47.49 ? 40 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 6.816 12.305 38.207 1.00 54.63 ? 41 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 3.749 7.613 25.124 1.00 55.61 ? 42 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 23.479 19.807 26.904 1.00 50.16 ? 43 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 22.922 17.832 26.103 0.50 36.43 ? 44 HOH A O 1 #