0.035663
0.000000
0.000000
0.000000
0.035663
0.000000
0.000000
0.000000
0.018815
0.00000
0.00000
0.00000
Williams, L.D.
Frederick, C.A.
Ughetto, G.
Rich, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.040
28.040
53.150
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H30 N O11 1
544.527
4'-EPIDOXORUBICIN
4'-EPIADRIAMYCIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
C
Y
113
N
C
N
114
S
C
N
115
N
C
N
116
S
C
N
117
N
C
Y
118
N
C
N
119
N
C
N
120
N
C
N
121
N
C
Y
122
N
C
Y
123
N
C
Y
124
N
C
Y
125
N
C
Y
126
N
C
Y
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
O
N
138
R
C
N
139
N
C
N
140
S
C
N
141
R
C
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
N
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
P
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
C
N
183
R
C
N
184
N
O
N
185
S
C
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
N
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
N
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
N
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
N
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
Y
125
N
doub
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
18
5533
5541
10.1093/nar/18.18.5533
2216725
Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes.
1990
10.2210/pdb1d15/pdb
pdb_00001d15
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ROOM TEMPERATURE
1
DIFFRACTOMETER
RIGAKU AFC-5
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
1809.217
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
1
syn
polymer
544.527
4'-EPIDOXORUBICIN
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
38
nat
water
no
no
(DC)(DG)(DA)(DT)(DC)(DG)
CGATCG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.89
57.40
VAPOR DIFFUSION, SITTING DROP
6.00
pH 6.00, VAPOR DIFFUSION, SITTING DROP
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
SPERMINE
1
MGCL2
1
WATER
2
MPD
2
7.044
1
19
A
1
A
6
0.224
A_DC1:DG6_A
1
0.195
0.131
0.065
-0.212
-17.492
1
19
A
2
A
5
2.019
A_DG2:DC5_A
2
0.070
0.027
-0.385
-0.214
-5.907
1
20
A
3
A
4
-0.854
A_DA3:DT4_A
3
1.140
0.170
0.208
-0.172
5.907
1
20
A
4
A
3
-0.854
A_DT4:DA3_A
4
1.140
-0.170
0.208
-0.172
17.492
1
19
A
5
A
2
2.019
A_DC5:DG2_A
5
0.070
-0.027
-0.385
-0.214
-7.044
1
19
A
6
A
1
0.224
A_DG6:DC1_A
6
0.195
-0.131
0.065
-0.212
7.022
37.389
A
A
1
2
-5.580
A
A
6
5
7.078
-3.568
1.298
1.163
AA_DC1DG2:DC5DG6_AA
1
3.097
-4.843
37.100
2.831
-1.143
3.348
30.159
A
A
2
3
-0.495
A
A
5
4
3.170
-0.256
-1.199
0.493
AA_DG2DA3:DT4DC5_AA
2
-6.517
12.621
29.462
0.999
0.965
2.999
31.959
A
A
3
4
10.509
A
A
4
3
3.195
5.756
0.000
-0.833
AA_DA3DT4:DA3DT4_AA
3
0.000
0.000
31.450
-2.508
0.000
3.348
30.159
A
A
4
5
-0.495
A
A
3
2
3.170
-0.256
1.199
0.493
AA_DT4DC5:DG2DA3_AA
4
6.517
-12.621
29.462
0.999
-0.965
7.022
37.389
A
A
5
6
-5.580
A
A
2
1
7.078
-3.568
-1.298
1.163
AA_DC5DG6:DC1DG2_AA
5
-3.097
4.843
37.100
2.831
1.143
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1991-07-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1990-07-03
REL
DM6
4'-EPIDOXORUBICIN
SPM
SPERMINE
HOH
water
DM6
7
2
DM6
DM6
7
A
SPM
8
3
SPM
SPM
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.0400000000
28.0400000000
26.5750000000
1
6.73
1.10
109.80
116.53
A
A
A
C5'
C4'
O4'
DC
DC
DC
1
1
1
N
1
-5.88
0.70
108.00
102.12
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-4.48
0.70
119.20
114.72
A
A
A
N1
C2
N3
DC
DC
DC
1
1
1
N
1
7.12
0.50
119.90
127.02
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-5.51
0.40
121.90
116.39
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
5.83
0.70
120.20
126.03
A
A
A
C5
C4
N4
DC
DC
DC
1
1
1
N
1
10.55
0.30
108.30
118.85
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-5.21
0.60
125.10
119.89
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
3.95
0.60
123.90
127.85
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
6.23
0.50
111.50
117.73
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-8.04
0.70
119.90
111.86
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-7.25
0.60
119.90
112.65
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-7.76
0.90
105.70
97.94
A
A
A
O5'
P
OP1
DA
DA
DA
3
3
3
N
1
-5.21
0.80
109.40
104.19
A
A
A
O5'
C5'
C4'
DA
DA
DA
3
3
3
N
1
3.97
0.30
108.30
112.27
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
7.44
1.20
110.70
118.14
A
A
A
O5'
P
OP2
DT
DT
DT
4
4
4
N
1
-7.84
0.80
109.40
101.56
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
-6.59
1.00
110.10
103.51
A
A
A
C1'
O4'
C4'
DT
DT
DT
4
4
4
N
1
-9.95
0.70
108.00
98.05
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-7.29
0.90
105.70
98.41
A
A
A
O5'
P
OP1
DC
DC
DC
5
5
5
N
1
-7.72
0.80
109.40
101.68
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
-5.17
0.80
105.90
100.73
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
13.98
0.30
108.30
122.28
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-2.55
0.40
120.30
117.75
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
6.08
0.50
119.90
125.98
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
-4.48
0.40
121.90
117.42
A
A
A
N3
C4
C5
DC
DC
DC
5
5
5
N
1
5.35
0.50
121.00
126.35
A
A
A
C5
C6
N1
DC
DC
DC
5
5
5
N
1
12.12
1.90
104.00
116.12
A
A
A
O3'
P
O5'
DC
DG
DG
5
6
6
Y
1
-4.66
0.40
104.50
99.84
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
1
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-8.58
0.60
125.10
116.52
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
-3.57
0.50
128.60
125.03
A
A
A
N3
C4
C5
DG
DG
DG
6
6
6
N
1
8.96
0.50
111.50
120.46
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
4.62
0.60
126.00
130.62
A
A
A
N3
C4
N9
DG
DG
DG
6
6
6
N
1
7.41
0.90
116.20
123.61
A
A
A
N1
C2
N2
DG
DG
DG
6
6
6
N
1
-11.01
0.70
119.90
108.89
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-4.08
0.60
119.90
115.82
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
-4.89
0.60
128.60
123.71
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
C4'
C3'
DC
DC
1
1
0.104
0.010
1.529
1.633
N
1
A
A
C2'
C1'
DC
DC
1
1
0.092
0.010
1.519
1.611
N
1
A
A
O3'
C3'
DC
DC
1
1
-0.081
0.006
1.419
1.338
N
1
A
A
P
O5'
DG
DG
2
2
0.069
0.010
1.593
1.662
N
1
A
A
C2'
C1'
DG
DG
2
2
0.098
0.010
1.519
1.617
N
1
A
A
C6
N1
DG
DG
2
2
-0.071
0.007
1.391
1.320
N
1
A
A
C2
N2
DG
DG
2
2
-0.121
0.010
1.341
1.220
N
1
A
A
O4'
C1'
DT
DT
4
4
0.089
0.011
1.420
1.509
N
1
A
A
P
O5'
DC
DC
5
5
0.078
0.010
1.593
1.671
N
1
A
A
C2'
C1'
DC
DC
5
5
0.081
0.010
1.519
1.600
N
1
A
A
N3
C4
DC
DC
5
5
0.042
0.007
1.335
1.377
N
1
A
A
C2'
C1'
DG
DG
6
6
0.083
0.010
1.519
1.602
N
1
A
A
C6
N1
DG
DG
6
6
-0.070
0.007
1.391
1.321
N
1
A
A
C8
N9
DG
DG
6
6
-0.050
0.007
1.374
1.324
N
1
A
A
N9
C4
DG
DG
6
6
0.057
0.008
1.375
1.432
N
1
A
A
C2
N2
DG
DG
6
6
-0.098
0.010
1.341
1.243
N
1
A
A
O
O
HOH
HOH
32
32
2.18
1_555
8_665
0.1960000
1.500
10.000
1714
1
1.500
TR
isotropic
TR
isotropic
1.500
10.000
38
211
53
120
0
0.019
fix
fix
1.500
10.000
1D15
1714
1.500
1
refinement
PROLSQ
(MODIFIED BY G.J.QUIGLEY)
refinement
MODIFIED
BY G.J.QUIGLEY
TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER DNA: ANTHRACYCLINE COMPLEXES
1
N
N
2
N
N
3
N
N
4
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
4
A
N3
DT
4
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
4
A
O4
DT
4
8_665
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
3
A
N1
DA
3
8_665
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
3
A
N6
DA
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D15
PDB
1
1D15
1
6
1D15
1
6
1D15
A
1
1
6
BINDING SITE FOR RESIDUE DM6 A 7
A
DM6
7
Software
10
BINDING SITE FOR RESIDUE SPM A 8
A
SPM
8
Software
10
A
DC
1
A
DC
1
10
8_665
A
DG
2
A
DG
2
10
8_665
A
DA
3
A
DA
3
10
8_665
A
DT
4
A
DT
4
10
8_665
A
DT
4
A
DT
4
10
1_555
A
DC
5
A
DC
5
10
1_555
A
DG
6
A
DG
6
10
1_555
A
SPM
8
C
SPM
10
1_555
A
HOH
16
D
HOH
10
1_555
A
HOH
19
D
HOH
10
8_665
A
DG
2
A
DG
2
10
8_665
A
DA
3
A
DA
3
10
1_555
A
DT
4
A
DT
4
10
1_555
A
DC
5
A
DC
5
10
1_555
A
DG
6
A
DG
6
10
5_655
A
DM6
7
B
DM6
10
1_555
A
HOH
14
D
HOH
10
1_555
A
HOH
23
D
HOH
10
1_555
A
HOH
24
D
HOH
10
8_665
A
HOH
35
D
HOH
10
1_555
92
P 41 21 2