0.022608 0.003672 0.008386 0.000000 0.022954 0.008284 0.000000 0.000000 0.020565 0.00000 0.00000 0.00000 Ling, H. Boodhoo, A. Brunton, J.L. Read, R.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 5 106.04 106.37 99.22 44.232 44.136 53.881 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-glucopyranose beta-D-glucose; D-glucose; glucose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 beta-D-galactopyranose beta-D-galactose; D-galactose; galactose D-saccharide, beta linking C6 H12 O6 180.156 alpha-D-galactopyranose alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Mutated Shiga-like Toxin B Subunit (W34A) Complexed with Receptor Gb3 Analogue 10.2210/pdb1d1i/pdb pdb_00001d1i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 IMAGE PLATE 1997-02-20 MACSCIENCE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 7583.501 SHIGA TOXIN B-CHAIN SHIGA TOXIN I BINDING DOMAIN W34A 5 man polymer 342.297 alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose 1 man branched 504.438 alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose 5 man branched 18.015 water 196 nat water no no TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR A,B,C,D,E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PLASMID PLASMID 1 2.47 50.22 VAPOR DIFFUSION, HANGING DROP 7.0 10% (NH4)2SO4, 5% propanol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 diffrn_source atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen chem_comp database_2 struct_ref_seq_dif repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Data collection Atomic model Data collection Derived calculations Structure summary Database references Structure summary 1 0 2000-09-20 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-04-04 2 0 2020-07-29 2 1 2021-11-03 _diffrn_source.type _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details F GAL 171 n F GAL 1 F GAL 170 n F GLA 2 F BGC 192 n G BGC 1 F GAL 191 n G GAL 2 F GAL 190 n G GLA 3 F BGC 292 n H BGC 1 F GAL 291 n H GAL 2 F GAL 290 n H GLA 3 F BGC 392 n I BGC 1 F GAL 391 n I GAL 2 F GAL 390 n I GLA 3 F BGC 492 n J BGC 1 F GAL 491 n J GAL 2 F GAL 490 n J GLA 3 F BGC 592 n K BGC 1 F GAL 591 n K GAL 2 F GAL 590 n K GLA 3 DGlcpb b-D-glucopyranose b-D-Glcp Glc DGalpb b-D-galactopyranose b-D-Galp Gal DGalpa a-D-galactopyranose a-D-Galp Gal 1bos conains the wild type protein in complexed with the same trisaccharide. RCSB Y RCSB 1999-09-17 REL REL oligosaccharide oligosaccharide DGalpa1-4DGalpb1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[a2112h-1b_1-5][a2112h-1a_1-5]/1-2/a4-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-Galp]{[(4+1)][a-D-Galp]{}} 2 PDB-CARE LINUCS DGalpa1-4DGalpb1-4DGlcpb1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][a2112h-1a_1-5]/1-2-3/a4-b1_b4-c1 3 PDB2Glycan 1.1.0 WURCS [][b-D-Glcp]{[(4+1)][b-D-Galp]{[(4+1)][a-D-Galp]{}}} 3 PDB-CARE LINUCS C1 O4 GLA GAL 2 1 2 O1 HO4 sing C1 O4 GAL BGC 2 1 3 O1 HO4 sing C1 O4 GLA GAL 3 2 3 O1 HO4 sing n n n n n HOH water HOH 643 4 HOH HOH 643 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 656 4 HOH HOH 656 A HOH 666 4 HOH HOH 666 A HOH 669 4 HOH HOH 669 A HOH 671 4 HOH HOH 671 A HOH 673 4 HOH HOH 673 A HOH 675 4 HOH HOH 675 A HOH 679 4 HOH HOH 679 A HOH 683 4 HOH HOH 683 A HOH 685 4 HOH HOH 685 A HOH 687 4 HOH HOH 687 A HOH 706 4 HOH HOH 706 A HOH 711 4 HOH HOH 711 A HOH 712 4 HOH HOH 712 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 732 4 HOH HOH 732 A HOH 733 4 HOH HOH 733 A HOH 751 4 HOH HOH 751 A HOH 753 4 HOH HOH 753 A HOH 759 4 HOH HOH 759 A HOH 764 4 HOH HOH 764 A HOH 789 4 HOH HOH 789 A HOH 790 4 HOH HOH 790 A HOH 795 4 HOH HOH 795 A HOH 801 4 HOH HOH 801 A HOH 807 4 HOH HOH 807 A HOH 810 4 HOH HOH 810 A HOH 815 4 HOH HOH 815 A HOH 836 4 HOH HOH 836 A HOH 601 4 HOH HOH 601 B HOH 604 4 HOH HOH 604 B HOH 605 4 HOH HOH 605 B HOH 609 4 HOH HOH 609 B HOH 610 4 HOH HOH 610 B HOH 611 4 HOH HOH 611 B HOH 616 4 HOH HOH 616 B HOH 619 4 HOH HOH 619 B HOH 623 4 HOH HOH 623 B HOH 624 4 HOH HOH 624 B HOH 627 4 HOH HOH 627 B HOH 629 4 HOH HOH 629 B HOH 634 4 HOH HOH 634 B HOH 637 4 HOH HOH 637 B HOH 639 4 HOH HOH 639 B HOH 641 4 HOH HOH 641 B HOH 644 4 HOH HOH 644 B HOH 645 4 HOH HOH 645 B HOH 672 4 HOH HOH 672 B HOH 677 4 HOH HOH 677 B HOH 684 4 HOH HOH 684 B HOH 689 4 HOH HOH 689 B HOH 690 4 HOH HOH 690 B HOH 691 4 HOH HOH 691 B HOH 699 4 HOH HOH 699 B HOH 719 4 HOH HOH 719 B HOH 720 4 HOH HOH 720 B HOH 722 4 HOH HOH 722 B HOH 735 4 HOH HOH 735 B HOH 757 4 HOH HOH 757 B HOH 768 4 HOH HOH 768 B HOH 770 4 HOH HOH 770 B HOH 772 4 HOH HOH 772 B HOH 778 4 HOH HOH 778 B HOH 787 4 HOH HOH 787 B HOH 804 4 HOH HOH 804 B HOH 809 4 HOH HOH 809 B HOH 812 4 HOH HOH 812 B HOH 823 4 HOH HOH 823 B HOH 846 4 HOH HOH 846 B HOH 602 4 HOH HOH 602 C HOH 603 4 HOH HOH 603 C HOH 607 4 HOH HOH 607 C HOH 608 4 HOH HOH 608 C HOH 612 4 HOH HOH 612 C HOH 613 4 HOH HOH 613 C HOH 614 4 HOH HOH 614 C HOH 618 4 HOH HOH 618 C HOH 620 4 HOH HOH 620 C HOH 621 4 HOH HOH 621 C HOH 625 4 HOH HOH 625 C HOH 630 4 HOH HOH 630 C HOH 631 4 HOH HOH 631 C HOH 632 4 HOH HOH 632 C HOH 633 4 HOH HOH 633 C HOH 640 4 HOH HOH 640 C HOH 646 4 HOH HOH 646 C HOH 665 4 HOH HOH 665 C HOH 681 4 HOH HOH 681 C HOH 686 4 HOH HOH 686 C HOH 688 4 HOH HOH 688 C HOH 693 4 HOH HOH 693 C HOH 694 4 HOH HOH 694 C HOH 695 4 HOH HOH 695 C HOH 697 4 HOH HOH 697 C HOH 700 4 HOH HOH 700 C HOH 701 4 HOH HOH 701 C HOH 714 4 HOH HOH 714 C HOH 717 4 HOH HOH 717 C HOH 723 4 HOH HOH 723 C HOH 724 4 HOH HOH 724 C HOH 727 4 HOH HOH 727 C HOH 741 4 HOH HOH 741 C HOH 756 4 HOH HOH 756 C HOH 773 4 HOH HOH 773 C HOH 788 4 HOH HOH 788 C HOH 803 4 HOH HOH 803 C HOH 811 4 HOH HOH 811 C HOH 839 4 HOH HOH 839 C HOH 844 4 HOH HOH 844 C HOH 850 4 HOH HOH 850 C HOH 606 4 HOH HOH 606 D HOH 649 4 HOH HOH 649 D HOH 654 4 HOH HOH 654 D HOH 655 4 HOH HOH 655 D HOH 657 4 HOH HOH 657 D HOH 658 4 HOH HOH 658 D HOH 659 4 HOH HOH 659 D HOH 660 4 HOH HOH 660 D HOH 662 4 HOH HOH 662 D HOH 664 4 HOH HOH 664 D HOH 670 4 HOH HOH 670 D HOH 674 4 HOH HOH 674 D HOH 676 4 HOH HOH 676 D HOH 678 4 HOH HOH 678 D HOH 680 4 HOH HOH 680 D HOH 682 4 HOH HOH 682 D HOH 703 4 HOH HOH 703 D HOH 705 4 HOH HOH 705 D HOH 707 4 HOH HOH 707 D HOH 708 4 HOH HOH 708 D HOH 709 4 HOH HOH 709 D HOH 710 4 HOH HOH 710 D HOH 725 4 HOH HOH 725 D HOH 726 4 HOH HOH 726 D HOH 730 4 HOH HOH 730 D HOH 731 4 HOH HOH 731 D HOH 743 4 HOH HOH 743 D HOH 744 4 HOH HOH 744 D HOH 752 4 HOH HOH 752 D HOH 769 4 HOH HOH 769 D HOH 779 4 HOH HOH 779 D HOH 782 4 HOH HOH 782 D HOH 797 4 HOH HOH 797 D HOH 805 4 HOH HOH 805 D HOH 816 4 HOH HOH 816 D HOH 822 4 HOH HOH 822 D HOH 831 4 HOH HOH 831 D HOH 837 4 HOH HOH 837 D HOH 841 4 HOH HOH 841 D HOH 848 4 HOH HOH 848 D HOH 849 4 HOH HOH 849 D HOH 615 4 HOH HOH 615 E HOH 617 4 HOH HOH 617 E HOH 622 4 HOH HOH 622 E HOH 626 4 HOH HOH 626 E HOH 628 4 HOH HOH 628 E HOH 635 4 HOH HOH 635 E HOH 636 4 HOH HOH 636 E HOH 638 4 HOH HOH 638 E HOH 642 4 HOH HOH 642 E HOH 647 4 HOH HOH 647 E HOH 648 4 HOH HOH 648 E HOH 653 4 HOH HOH 653 E HOH 661 4 HOH HOH 661 E HOH 663 4 HOH HOH 663 E HOH 667 4 HOH HOH 667 E HOH 668 4 HOH HOH 668 E HOH 692 4 HOH HOH 692 E HOH 696 4 HOH HOH 696 E HOH 698 4 HOH HOH 698 E HOH 702 4 HOH HOH 702 E HOH 704 4 HOH HOH 704 E HOH 713 4 HOH HOH 713 E HOH 718 4 HOH HOH 718 E HOH 721 4 HOH HOH 721 E HOH 738 4 HOH HOH 738 E HOH 739 4 HOH HOH 739 E HOH 745 4 HOH HOH 745 E HOH 747 4 HOH HOH 747 E HOH 749 4 HOH HOH 749 E HOH 761 4 HOH HOH 761 E HOH 784 4 HOH HOH 784 E HOH 786 4 HOH HOH 786 E HOH 793 4 HOH HOH 793 E HOH 798 4 HOH HOH 798 E HOH 814 4 HOH HOH 814 E HOH 817 4 HOH HOH 817 E HOH 826 4 HOH HOH 826 E HOH 829 4 HOH HOH 829 E HOH 834 4 HOH HOH 834 E THR 101 n 1 THR 101 A PRO 102 n 2 PRO 102 A ASP 103 n 3 ASP 103 A CYS 104 n 4 CYS 104 A VAL 105 n 5 VAL 105 A THR 106 n 6 THR 106 A GLY 107 n 7 GLY 107 A LYS 108 n 8 LYS 108 A VAL 109 n 9 VAL 109 A GLU 110 n 10 GLU 110 A TYR 111 n 11 TYR 111 A THR 112 n 12 THR 112 A LYS 113 n 13 LYS 113 A TYR 114 n 14 TYR 114 A ASN 115 n 15 ASN 115 A ASP 116 n 16 ASP 116 A ASP 117 n 17 ASP 117 A ASP 118 n 18 ASP 118 A THR 119 n 19 THR 119 A PHE 120 n 20 PHE 120 A THR 121 n 21 THR 121 A VAL 122 n 22 VAL 122 A LYS 123 n 23 LYS 123 A VAL 124 n 24 VAL 124 A GLY 125 n 25 GLY 125 A ASP 126 n 26 ASP 126 A LYS 127 n 27 LYS 127 A GLU 128 n 28 GLU 128 A LEU 129 n 29 LEU 129 A PHE 130 n 30 PHE 130 A THR 131 n 31 THR 131 A ASN 132 n 32 ASN 132 A ARG 133 n 33 ARG 133 A ALA 134 n 34 ALA 134 A ASN 135 n 35 ASN 135 A LEU 136 n 36 LEU 136 A GLN 137 n 37 GLN 137 A SER 138 n 38 SER 138 A LEU 139 n 39 LEU 139 A LEU 140 n 40 LEU 140 A LEU 141 n 41 LEU 141 A SER 142 n 42 SER 142 A ALA 143 n 43 ALA 143 A GLN 144 n 44 GLN 144 A ILE 145 n 45 ILE 145 A THR 146 n 46 THR 146 A GLY 147 n 47 GLY 147 A MET 148 n 48 MET 148 A THR 149 n 49 THR 149 A VAL 150 n 50 VAL 150 A THR 151 n 51 THR 151 A ILE 152 n 52 ILE 152 A LYS 153 n 53 LYS 153 A THR 154 n 54 THR 154 A ASN 155 n 55 ASN 155 A ALA 156 n 56 ALA 156 A CYS 157 n 57 CYS 157 A HIS 158 n 58 HIS 158 A ASN 159 n 59 ASN 159 A GLY 160 n 60 GLY 160 A GLY 161 n 61 GLY 161 A GLY 162 n 62 GLY 162 A PHE 163 n 63 PHE 163 A SER 164 n 64 SER 164 A GLU 165 n 65 GLU 165 A VAL 166 n 66 VAL 166 A ILE 167 n 67 ILE 167 A PHE 168 n 68 PHE 168 A ARG 169 n 69 ARG 169 A THR 201 n 1 THR 201 B PRO 202 n 2 PRO 202 B ASP 203 n 3 ASP 203 B CYS 204 n 4 CYS 204 B VAL 205 n 5 VAL 205 B THR 206 n 6 THR 206 B GLY 207 n 7 GLY 207 B LYS 208 n 8 LYS 208 B VAL 209 n 9 VAL 209 B GLU 210 n 10 GLU 210 B TYR 211 n 11 TYR 211 B THR 212 n 12 THR 212 B LYS 213 n 13 LYS 213 B TYR 214 n 14 TYR 214 B ASN 215 n 15 ASN 215 B ASP 216 n 16 ASP 216 B ASP 217 n 17 ASP 217 B ASP 218 n 18 ASP 218 B THR 219 n 19 THR 219 B PHE 220 n 20 PHE 220 B THR 221 n 21 THR 221 B VAL 222 n 22 VAL 222 B LYS 223 n 23 LYS 223 B VAL 224 n 24 VAL 224 B GLY 225 n 25 GLY 225 B ASP 226 n 26 ASP 226 B LYS 227 n 27 LYS 227 B GLU 228 n 28 GLU 228 B LEU 229 n 29 LEU 229 B PHE 230 n 30 PHE 230 B THR 231 n 31 THR 231 B ASN 232 n 32 ASN 232 B ARG 233 n 33 ARG 233 B ALA 234 n 34 ALA 234 B ASN 235 n 35 ASN 235 B LEU 236 n 36 LEU 236 B GLN 237 n 37 GLN 237 B SER 238 n 38 SER 238 B LEU 239 n 39 LEU 239 B LEU 240 n 40 LEU 240 B LEU 241 n 41 LEU 241 B SER 242 n 42 SER 242 B ALA 243 n 43 ALA 243 B GLN 244 n 44 GLN 244 B ILE 245 n 45 ILE 245 B THR 246 n 46 THR 246 B GLY 247 n 47 GLY 247 B MET 248 n 48 MET 248 B THR 249 n 49 THR 249 B VAL 250 n 50 VAL 250 B THR 251 n 51 THR 251 B ILE 252 n 52 ILE 252 B LYS 253 n 53 LYS 253 B THR 254 n 54 THR 254 B ASN 255 n 55 ASN 255 B ALA 256 n 56 ALA 256 B CYS 257 n 57 CYS 257 B HIS 258 n 58 HIS 258 B ASN 259 n 59 ASN 259 B GLY 260 n 60 GLY 260 B GLY 261 n 61 GLY 261 B GLY 262 n 62 GLY 262 B PHE 263 n 63 PHE 263 B SER 264 n 64 SER 264 B GLU 265 n 65 GLU 265 B VAL 266 n 66 VAL 266 B ILE 267 n 67 ILE 267 B PHE 268 n 68 PHE 268 B ARG 269 n 69 ARG 269 B THR 301 n 1 THR 301 C PRO 302 n 2 PRO 302 C ASP 303 n 3 ASP 303 C CYS 304 n 4 CYS 304 C VAL 305 n 5 VAL 305 C THR 306 n 6 THR 306 C GLY 307 n 7 GLY 307 C LYS 308 n 8 LYS 308 C VAL 309 n 9 VAL 309 C GLU 310 n 10 GLU 310 C TYR 311 n 11 TYR 311 C THR 312 n 12 THR 312 C LYS 313 n 13 LYS 313 C TYR 314 n 14 TYR 314 C ASN 315 n 15 ASN 315 C ASP 316 n 16 ASP 316 C ASP 317 n 17 ASP 317 C ASP 318 n 18 ASP 318 C THR 319 n 19 THR 319 C PHE 320 n 20 PHE 320 C THR 321 n 21 THR 321 C VAL 322 n 22 VAL 322 C LYS 323 n 23 LYS 323 C VAL 324 n 24 VAL 324 C GLY 325 n 25 GLY 325 C ASP 326 n 26 ASP 326 C LYS 327 n 27 LYS 327 C GLU 328 n 28 GLU 328 C LEU 329 n 29 LEU 329 C PHE 330 n 30 PHE 330 C THR 331 n 31 THR 331 C ASN 332 n 32 ASN 332 C ARG 333 n 33 ARG 333 C ALA 334 n 34 ALA 334 C ASN 335 n 35 ASN 335 C LEU 336 n 36 LEU 336 C GLN 337 n 37 GLN 337 C SER 338 n 38 SER 338 C LEU 339 n 39 LEU 339 C LEU 340 n 40 LEU 340 C LEU 341 n 41 LEU 341 C SER 342 n 42 SER 342 C ALA 343 n 43 ALA 343 C GLN 344 n 44 GLN 344 C ILE 345 n 45 ILE 345 C THR 346 n 46 THR 346 C GLY 347 n 47 GLY 347 C MET 348 n 48 MET 348 C THR 349 n 49 THR 349 C VAL 350 n 50 VAL 350 C THR 351 n 51 THR 351 C ILE 352 n 52 ILE 352 C LYS 353 n 53 LYS 353 C THR 354 n 54 THR 354 C ASN 355 n 55 ASN 355 C ALA 356 n 56 ALA 356 C CYS 357 n 57 CYS 357 C HIS 358 n 58 HIS 358 C ASN 359 n 59 ASN 359 C GLY 360 n 60 GLY 360 C GLY 361 n 61 GLY 361 C GLY 362 n 62 GLY 362 C PHE 363 n 63 PHE 363 C SER 364 n 64 SER 364 C GLU 365 n 65 GLU 365 C VAL 366 n 66 VAL 366 C ILE 367 n 67 ILE 367 C PHE 368 n 68 PHE 368 C ARG 369 n 69 ARG 369 C THR 401 n 1 THR 401 D PRO 402 n 2 PRO 402 D ASP 403 n 3 ASP 403 D CYS 404 n 4 CYS 404 D VAL 405 n 5 VAL 405 D THR 406 n 6 THR 406 D GLY 407 n 7 GLY 407 D LYS 408 n 8 LYS 408 D VAL 409 n 9 VAL 409 D GLU 410 n 10 GLU 410 D TYR 411 n 11 TYR 411 D THR 412 n 12 THR 412 D LYS 413 n 13 LYS 413 D TYR 414 n 14 TYR 414 D ASN 415 n 15 ASN 415 D ASP 416 n 16 ASP 416 D ASP 417 n 17 ASP 417 D ASP 418 n 18 ASP 418 D THR 419 n 19 THR 419 D PHE 420 n 20 PHE 420 D THR 421 n 21 THR 421 D VAL 422 n 22 VAL 422 D LYS 423 n 23 LYS 423 D VAL 424 n 24 VAL 424 D GLY 425 n 25 GLY 425 D ASP 426 n 26 ASP 426 D LYS 427 n 27 LYS 427 D GLU 428 n 28 GLU 428 D LEU 429 n 29 LEU 429 D PHE 430 n 30 PHE 430 D THR 431 n 31 THR 431 D ASN 432 n 32 ASN 432 D ARG 433 n 33 ARG 433 D ALA 434 n 34 ALA 434 D ASN 435 n 35 ASN 435 D LEU 436 n 36 LEU 436 D GLN 437 n 37 GLN 437 D SER 438 n 38 SER 438 D LEU 439 n 39 LEU 439 D LEU 440 n 40 LEU 440 D LEU 441 n 41 LEU 441 D SER 442 n 42 SER 442 D ALA 443 n 43 ALA 443 D GLN 444 n 44 GLN 444 D ILE 445 n 45 ILE 445 D THR 446 n 46 THR 446 D GLY 447 n 47 GLY 447 D MET 448 n 48 MET 448 D THR 449 n 49 THR 449 D VAL 450 n 50 VAL 450 D THR 451 n 51 THR 451 D ILE 452 n 52 ILE 452 D LYS 453 n 53 LYS 453 D THR 454 n 54 THR 454 D ASN 455 n 55 ASN 455 D ALA 456 n 56 ALA 456 D CYS 457 n 57 CYS 457 D HIS 458 n 58 HIS 458 D ASN 459 n 59 ASN 459 D GLY 460 n 60 GLY 460 D GLY 461 n 61 GLY 461 D GLY 462 n 62 GLY 462 D PHE 463 n 63 PHE 463 D SER 464 n 64 SER 464 D GLU 465 n 65 GLU 465 D VAL 466 n 66 VAL 466 D ILE 467 n 67 ILE 467 D PHE 468 n 68 PHE 468 D ARG 469 n 69 ARG 469 D THR 501 n 1 THR 501 E PRO 502 n 2 PRO 502 E ASP 503 n 3 ASP 503 E CYS 504 n 4 CYS 504 E VAL 505 n 5 VAL 505 E THR 506 n 6 THR 506 E GLY 507 n 7 GLY 507 E LYS 508 n 8 LYS 508 E VAL 509 n 9 VAL 509 E GLU 510 n 10 GLU 510 E TYR 511 n 11 TYR 511 E THR 512 n 12 THR 512 E LYS 513 n 13 LYS 513 E TYR 514 n 14 TYR 514 E ASN 515 n 15 ASN 515 E ASP 516 n 16 ASP 516 E ASP 517 n 17 ASP 517 E ASP 518 n 18 ASP 518 E THR 519 n 19 THR 519 E PHE 520 n 20 PHE 520 E THR 521 n 21 THR 521 E VAL 522 n 22 VAL 522 E LYS 523 n 23 LYS 523 E VAL 524 n 24 VAL 524 E GLY 525 n 25 GLY 525 E ASP 526 n 26 ASP 526 E LYS 527 n 27 LYS 527 E GLU 528 n 28 GLU 528 E LEU 529 n 29 LEU 529 E PHE 530 n 30 PHE 530 E THR 531 n 31 THR 531 E ASN 532 n 32 ASN 532 E ARG 533 n 33 ARG 533 E ALA 534 n 34 ALA 534 E ASN 535 n 35 ASN 535 E LEU 536 n 36 LEU 536 E GLN 537 n 37 GLN 537 E SER 538 n 38 SER 538 E LEU 539 n 39 LEU 539 E LEU 540 n 40 LEU 540 E LEU 541 n 41 LEU 541 E SER 542 n 42 SER 542 E ALA 543 n 43 ALA 543 E GLN 544 n 44 GLN 544 E ILE 545 n 45 ILE 545 E THR 546 n 46 THR 546 E GLY 547 n 47 GLY 547 E MET 548 n 48 MET 548 E THR 549 n 49 THR 549 E VAL 550 n 50 VAL 550 E THR 551 n 51 THR 551 E ILE 552 n 52 ILE 552 E LYS 553 n 53 LYS 553 E THR 554 n 54 THR 554 E ASN 555 n 55 ASN 555 E ALA 556 n 56 ALA 556 E CYS 557 n 57 CYS 557 E HIS 558 n 58 HIS 558 E ASN 559 n 59 ASN 559 E GLY 560 n 60 GLY 560 E GLY 561 n 61 GLY 561 E GLY 562 n 62 GLY 562 E PHE 563 n 63 PHE 563 E SER 564 n 64 SER 564 E GLU 565 n 65 GLU 565 E VAL 566 n 66 VAL 566 E ILE 567 n 67 ILE 567 E PHE 568 n 68 PHE 568 E ARG 569 n 69 ARG 569 E author_and_software_defined_assembly PISA 5 pentameric 11550 19 13420 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 127 A O LYS 27 A N VAL 124 A N VAL 24 A O THR 121 A O THR 21 A N LYS 113 A N LYS 13 A O GLU 165 A O GLU 65 A N LYS 153 A N LYS 53 A O VAL 150 A O VAL 50 A N GLY 107 A N GLY 7 B O LYS 227 B O LYS 27 B N VAL 224 B N VAL 24 B O THR 221 B O THR 21 B N LYS 213 B N LYS 13 B O GLU 265 B O GLU 65 B N LYS 253 B N LYS 53 B O VAL 250 B O VAL 50 B N GLY 207 B N GLY 7 C O TYR 311 C O TYR 11 C N LYS 323 C N LYS 23 C O PHE 320 C O PHE 20 C N THR 331 C N THR 31 C O GLU 365 C O GLU 65 C N LYS 353 C N LYS 53 C O VAL 350 C O VAL 50 C N GLY 307 C N GLY 7 D O LYS 427 D O LYS 27 D N VAL 424 D N VAL 24 D O THR 421 D O THR 21 D N LYS 413 D N LYS 13 D O GLU 465 D O GLU 65 D N LYS 453 D N LYS 53 D O VAL 450 D O VAL 50 D N GLY 407 D N GLY 7 E O LYS 527 E O LYS 27 E N VAL 524 E N VAL 24 E O THR 521 E O THR 21 E N LYS 513 E N LYS 13 E O GLU 565 E O GLU 65 E N LYS 553 E N LYS 53 E O VAL 550 E O VAL 50 E N GLY 507 E N GLY 7 1 -4.50 0.60 121.00 116.50 A A A CB CG CD1 TYR TYR TYR 111 111 111 N 1 13.89 2.30 115.30 129.19 A A A CA CB CG LEU LEU LEU 129 129 129 N 1 31.41 1.40 123.60 155.01 A A A CD NE CZ ARG ARG ARG 169 169 169 N 1 10.45 0.50 120.30 130.75 A A A NE CZ NH1 ARG ARG ARG 169 169 169 N 1 -12.13 0.50 120.30 108.17 A A A NE CZ NH2 ARG ARG ARG 169 169 169 N 1 -4.42 0.60 121.00 116.58 B B B CB CG CD1 TYR TYR TYR 211 211 211 N 1 31.16 1.40 123.60 154.76 B B B CD NE CZ ARG ARG ARG 269 269 269 N 1 10.98 0.50 120.30 131.28 B B B NE CZ NH1 ARG ARG ARG 269 269 269 N 1 -13.14 0.50 120.30 107.16 B B B NE CZ NH2 ARG ARG ARG 269 269 269 N 1 -4.41 0.60 121.00 116.59 C C C CB CG CD1 TYR TYR TYR 311 311 311 N 1 14.77 2.30 115.30 130.07 C C C CA CB CG LEU LEU LEU 329 329 329 N 1 3.09 0.50 120.30 123.39 C C C NE CZ NH1 ARG ARG ARG 333 333 333 N 1 23.24 1.40 123.60 146.84 C C C CD NE CZ ARG ARG ARG 369 369 369 N 1 -8.91 0.50 120.30 111.39 C C C NE CZ NH1 ARG ARG ARG 369 369 369 N 1 7.22 0.50 120.30 127.52 C C C NE CZ NH2 ARG ARG ARG 369 369 369 N 1 -4.83 0.60 121.00 116.17 D D D CB CG CD1 TYR TYR TYR 411 411 411 N 1 14.49 2.30 115.30 129.79 D D D CA CB CG LEU LEU LEU 429 429 429 N 1 23.60 1.40 123.60 147.20 D D D CD NE CZ ARG ARG ARG 469 469 469 N 1 -9.31 0.50 120.30 110.99 D D D NE CZ NH1 ARG ARG ARG 469 469 469 N 1 8.36 0.50 120.30 128.66 D D D NE CZ NH2 ARG ARG ARG 469 469 469 N 1 -4.24 0.60 121.00 116.76 E E E CB CG CD1 TYR TYR TYR 511 511 511 N 1 23.48 1.40 123.60 147.08 E E E CD NE CZ ARG ARG ARG 569 569 569 N 1 -9.22 0.50 120.30 111.08 E E E NE CZ NH1 ARG ARG ARG 569 569 569 N 1 7.73 0.50 120.30 128.03 E E E NE CZ NH2 ARG ARG ARG 569 569 569 N 1 A A CB CG2 VAL VAL 109 109 -0.144 0.021 1.524 1.380 N 1 A A NE2 CD2 HIS HIS 158 158 -0.085 0.011 1.373 1.288 N 1 B B NE2 CD2 HIS HIS 258 258 -0.074 0.011 1.373 1.299 N 1 C C NE2 CD2 HIS HIS 358 358 -0.087 0.011 1.373 1.286 N 1 D D NE2 CD2 HIS HIS 458 458 -0.067 0.011 1.373 1.306 N 1 E E NE2 CD2 HIS HIS 558 558 -0.069 0.011 1.373 1.304 N 1 B ALA 256 -100.61 64.52 19.08 maximum likelihood F target, with NCS restraints, bulk solvent correction 0.211 0.191 1.70 19.7 1101 39890 36339 3.0 91.1 thin shells through whole resolution range 1 0.00 Engh & Huber 1.70 19.7 196 3044 193 0 2655 1.6 0.014 15.6 1.70 19.7 1D1I 39890 36339 0.00 0.081 1 13.9 2.2 91.1 0.362 1.70 1.73 1199 1.36 61.6 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement X-PLOR 3.851 MUTATED SHIGA-LIKE TOXIN B SUBUNIT (W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N homopentamer, active as a pentamer A ALA 134 A ALA 34 HELX_P A THR 146 A THR 46 1 1 13 B ALA 234 B ALA 34 HELX_P B THR 246 B THR 46 5 2 13 C ALA 334 C ALA 34 HELX_P C THR 346 C THR 46 5 3 13 D ALA 434 D ALA 34 HELX_P D THR 446 D THR 46 5 4 13 E ALA 534 E ALA 34 HELX_P E THR 546 E THR 46 1 5 13 disulf 2.062 A CYS 104 A SG CYS 4 1_555 A CYS 157 A SG CYS 57 1_555 disulf 2.039 B CYS 204 B SG CYS 4 1_555 B CYS 257 B SG CYS 57 1_555 disulf 2.056 C CYS 304 C SG CYS 4 1_555 C CYS 357 C SG CYS 57 1_555 disulf 2.043 D CYS 404 D SG CYS 4 1_555 D CYS 457 D SG CYS 57 1_555 disulf 2.065 E CYS 504 E SG CYS 4 1_555 E CYS 557 E SG CYS 57 1_555 covale 1.408 both F GAL 1 F O4 GAL 1_555 F GLA 2 F C1 GLA 1_555 covale 1.391 both G BGC 1 G O4 BGC 1_555 G GAL 2 G C1 GAL 1_555 covale 1.409 both G GAL 2 G O4 GAL 1_555 G GLA 3 G C1 GLA 1_555 covale 1.387 both H BGC 1 H O4 BGC 1_555 H GAL 2 H C1 GAL 1_555 covale 1.407 both H GAL 2 H O4 GAL 1_555 H GLA 3 H C1 GLA 1_555 covale 1.397 both I BGC 1 I O4 BGC 1_555 I GAL 2 I C1 GAL 1_555 covale 1.414 both I GAL 2 I O4 GAL 1_555 I GLA 3 I C1 GLA 1_555 covale 1.391 both J BGC 1 J O4 BGC 1_555 J GAL 2 J C1 GAL 1_555 covale 1.411 both J GAL 2 J O4 GAL 1_555 J GLA 3 J C1 GLA 1_555 covale 1.399 both K BGC 1 K O4 BGC 1_555 K GAL 2 K C1 GAL 1_555 covale 1.413 both K GAL 2 K O4 GAL 1_555 K GLA 3 K C1 GLA 1_555 TOXIN TOXIN, RECEPTOR BINDING, PROTEIN-CARBOHYDRATE RECOGNITION, OB-FOLD SLTB_BPH30 UNP 1 P08027 21 89 1D1I 101 169 P08027 A 1 1 69 21 89 1D1I 201 269 P08027 B 1 1 69 21 89 1D1I 301 369 P08027 C 1 1 69 21 89 1D1I 401 469 P08027 D 1 1 69 21 89 1D1I 501 569 P08027 E 1 1 69 1 TRP engineered mutation ALA 134 1D1I A P08027 UNP 54 34 2 TRP engineered mutation ALA 234 1D1I B P08027 UNP 54 34 3 TRP engineered mutation ALA 334 1D1I C P08027 UNP 54 34 4 TRP engineered mutation ALA 434 1D1I D P08027 UNP 54 34 5 TRP engineered mutation ALA 534 1D1I E P08027 UNP 54 34 3 3 3 3 3 3 3 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 127 A LYS 27 A THR 131 A THR 31 A PHE 120 A PHE 20 A VAL 124 A VAL 24 A VAL 109 A VAL 9 A TYR 114 A TYR 14 A GLU 165 A GLU 65 A ARG 169 A ARG 69 A THR 149 A THR 49 A LYS 153 A LYS 53 A ASP 103 A ASP 3 A LYS 108 A LYS 8 B LYS 227 B LYS 27 B THR 231 B THR 31 B PHE 220 B PHE 20 B VAL 224 B VAL 24 B VAL 209 B VAL 9 B TYR 214 B TYR 14 B GLU 265 B GLU 65 B ARG 269 B ARG 69 B THR 249 B THR 49 B LYS 253 B LYS 53 B ASP 203 B ASP 3 B LYS 208 B LYS 8 C TYR 311 C TYR 11 C TYR 314 C TYR 14 C PHE 320 C PHE 20 C VAL 324 C VAL 24 C LYS 327 C LYS 27 C THR 331 C THR 31 C GLU 365 C GLU 65 C ARG 369 C ARG 69 C THR 349 C THR 49 C LYS 353 C LYS 53 C ASP 303 C ASP 3 C LYS 308 C LYS 8 D LYS 427 D LYS 27 D THR 431 D THR 31 D PHE 420 D PHE 20 D VAL 424 D VAL 24 D VAL 409 D VAL 9 D TYR 414 D TYR 14 D GLU 465 D GLU 65 D ARG 469 D ARG 69 D THR 449 D THR 49 D LYS 453 D LYS 53 D ASP 403 D ASP 3 D LYS 408 D LYS 8 E LYS 527 E LYS 27 E THR 531 E THR 31 E PHE 520 E PHE 20 E VAL 524 E VAL 24 E VAL 509 E VAL 9 E TYR 514 E TYR 14 E GLU 565 E GLU 65 E ARG 569 E ARG 69 E THR 549 E THR 49 E LYS 553 E LYS 53 E ASP 503 E ASP 3 E LYS 508 E LYS 8 1 P 1