0.022613
0.003687
0.008399
0.000000
0.022959
0.008298
0.000000
0.000000
0.020634
0.00000
0.00000
0.00000
Ling, H.
Brunton, J.L.
Read, R.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
5
106.05
106.38
99.26
44.223
44.131
53.710
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-galactopyranose
D-saccharide, alpha linking
C6 H12 O6
180.156
alpha-D-glucopyranose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Mutated Shiga-like toxin B subunit (D17E/W34A) complexed with receptor Gb3 analogue
GLC F 1 HAS WRONG CHIRALITY AT ATOM C1
GLC G 1 HAS WRONG CHIRALITY AT ATOM C1
GLC H 1 HAS WRONG CHIRALITY AT ATOM C1
GLC I 1 HAS WRONG CHIRALITY AT ATOM C1
GLC J 1 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
AREA DETECTOR
1998-02-12
SIEMENS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
7597.528
SHIGA-LIKE TOXIN I SUBUNIT B
SHIGA TOXIN I BINDING DOMAIN
D17E,W34A
5
man
polymer
504.438
alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
5
man
branched
18.015
water
246
nat
water
no
no
TPDCVTGKVEYTKYNDEDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR
TPDCVTGKVEYTKYNDEDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR
A,B,C,D,E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
12371
Phage h30
562
Escherichia coli
PLASMID
1
2.46
49.94
VAPOR DIFFUSION, HANGING DROP
7.5
0.4 M K,NA TARTRATE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
software
struct_ref_seq_dif
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Source and taxonomy
Refinement description
Database references
Advisory
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
2000-09-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2012-07-18
1
4
2017-10-04
1
5
2018-03-14
2
0
2020-07-29
_struct_ref_seq_dif.details
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
F
GLC
192
n
F
GLC
1
F
GAL
191
n
F
GAL
2
F
GAL
190
n
F
GLA
3
F
GLC
292
n
G
GLC
1
F
GAL
291
n
G
GAL
2
F
GAL
290
n
G
GLA
3
F
GLC
392
n
H
GLC
1
F
GAL
391
n
H
GAL
2
F
GAL
390
n
H
GLA
3
F
GLC
492
n
I
GLC
1
F
GAL
491
n
I
GAL
2
F
GAL
490
n
I
GLA
3
F
GLC
592
n
J
GLC
1
F
GAL
591
n
J
GAL
2
F
GAL
590
n
J
GLA
3
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGalpa
a-D-galactopyranose
a-D-Galp
Gal
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
1bos conains the wild type protein in complexed with the same trisaccharide.
RCSB
Y
RCSB
1999-09-17
REL
REL
oligosaccharide
DGalpa1-4DGalpb1-4DGlcpa1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,3,2/[a2122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5]/1-2-3/a4-b1_b4-c1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(4+1)][a-D-Galp]{}}}
2
PDB-CARE
LINUCS
C1
O4
GAL
GLC
2
1
2
O1
HO4
sing
C1
O4
GLA
GAL
3
2
2
O1
HO4
sing
n
n
n
HOH
water
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
619
3
HOH
HOH
619
A
HOH
621
3
HOH
HOH
621
A
HOH
623
3
HOH
HOH
623
A
HOH
631
3
HOH
HOH
631
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
640
3
HOH
HOH
640
A
HOH
652
3
HOH
HOH
652
A
HOH
656
3
HOH
HOH
656
A
HOH
659
3
HOH
HOH
659
A
HOH
664
3
HOH
HOH
664
A
HOH
666
3
HOH
HOH
666
A
HOH
671
3
HOH
HOH
671
A
HOH
680
3
HOH
HOH
680
A
HOH
697
3
HOH
HOH
697
A
HOH
699
3
HOH
HOH
699
A
HOH
700
3
HOH
HOH
700
A
HOH
717
3
HOH
HOH
717
A
HOH
723
3
HOH
HOH
723
A
HOH
729
3
HOH
HOH
729
A
HOH
744
3
HOH
HOH
744
A
HOH
747
3
HOH
HOH
747
A
HOH
754
3
HOH
HOH
754
A
HOH
755
3
HOH
HOH
755
A
HOH
762
3
HOH
HOH
762
A
HOH
763
3
HOH
HOH
763
A
HOH
767
3
HOH
HOH
767
A
HOH
772
3
HOH
HOH
772
A
HOH
773
3
HOH
HOH
773
A
HOH
776
3
HOH
HOH
776
A
HOH
778
3
HOH
HOH
778
A
HOH
804
3
HOH
HOH
804
A
HOH
805
3
HOH
HOH
805
A
HOH
809
3
HOH
HOH
809
A
HOH
813
3
HOH
HOH
813
A
HOH
820
3
HOH
HOH
820
A
HOH
830
3
HOH
HOH
830
A
HOH
841
3
HOH
HOH
841
A
HOH
602
3
HOH
HOH
602
B
HOH
611
3
HOH
HOH
611
B
HOH
613
3
HOH
HOH
613
B
HOH
617
3
HOH
HOH
617
B
HOH
629
3
HOH
HOH
629
B
HOH
633
3
HOH
HOH
633
B
HOH
636
3
HOH
HOH
636
B
HOH
642
3
HOH
HOH
642
B
HOH
648
3
HOH
HOH
648
B
HOH
650
3
HOH
HOH
650
B
HOH
654
3
HOH
HOH
654
B
HOH
661
3
HOH
HOH
661
B
HOH
670
3
HOH
HOH
670
B
HOH
674
3
HOH
HOH
674
B
HOH
676
3
HOH
HOH
676
B
HOH
683
3
HOH
HOH
683
B
HOH
684
3
HOH
HOH
684
B
HOH
690
3
HOH
HOH
690
B
HOH
702
3
HOH
HOH
702
B
HOH
720
3
HOH
HOH
720
B
HOH
722
3
HOH
HOH
722
B
HOH
724
3
HOH
HOH
724
B
HOH
734
3
HOH
HOH
734
B
HOH
738
3
HOH
HOH
738
B
HOH
739
3
HOH
HOH
739
B
HOH
743
3
HOH
HOH
743
B
HOH
745
3
HOH
HOH
745
B
HOH
750
3
HOH
HOH
750
B
HOH
752
3
HOH
HOH
752
B
HOH
757
3
HOH
HOH
757
B
HOH
758
3
HOH
HOH
758
B
HOH
760
3
HOH
HOH
760
B
HOH
761
3
HOH
HOH
761
B
HOH
765
3
HOH
HOH
765
B
HOH
770
3
HOH
HOH
770
B
HOH
774
3
HOH
HOH
774
B
HOH
777
3
HOH
HOH
777
B
HOH
786
3
HOH
HOH
786
B
HOH
788
3
HOH
HOH
788
B
HOH
796
3
HOH
HOH
796
B
HOH
798
3
HOH
HOH
798
B
HOH
810
3
HOH
HOH
810
B
HOH
812
3
HOH
HOH
812
B
HOH
814
3
HOH
HOH
814
B
HOH
815
3
HOH
HOH
815
B
HOH
817
3
HOH
HOH
817
B
HOH
822
3
HOH
HOH
822
B
HOH
823
3
HOH
HOH
823
B
HOH
826
3
HOH
HOH
826
B
HOH
832
3
HOH
HOH
832
B
HOH
836
3
HOH
HOH
836
B
HOH
837
3
HOH
HOH
837
B
HOH
838
3
HOH
HOH
838
B
HOH
844
3
HOH
HOH
844
B
HOH
845
3
HOH
HOH
845
B
HOH
601
3
HOH
HOH
601
C
HOH
604
3
HOH
HOH
604
C
HOH
606
3
HOH
HOH
606
C
HOH
609
3
HOH
HOH
609
C
HOH
620
3
HOH
HOH
620
C
HOH
625
3
HOH
HOH
625
C
HOH
626
3
HOH
HOH
626
C
HOH
627
3
HOH
HOH
627
C
HOH
637
3
HOH
HOH
637
C
HOH
638
3
HOH
HOH
638
C
HOH
639
3
HOH
HOH
639
C
HOH
644
3
HOH
HOH
644
C
HOH
651
3
HOH
HOH
651
C
HOH
657
3
HOH
HOH
657
C
HOH
669
3
HOH
HOH
669
C
HOH
675
3
HOH
HOH
675
C
HOH
677
3
HOH
HOH
677
C
HOH
686
3
HOH
HOH
686
C
HOH
688
3
HOH
HOH
688
C
HOH
689
3
HOH
HOH
689
C
HOH
692
3
HOH
HOH
692
C
HOH
694
3
HOH
HOH
694
C
HOH
696
3
HOH
HOH
696
C
HOH
698
3
HOH
HOH
698
C
HOH
706
3
HOH
HOH
706
C
HOH
708
3
HOH
HOH
708
C
HOH
712
3
HOH
HOH
712
C
HOH
714
3
HOH
HOH
714
C
HOH
725
3
HOH
HOH
725
C
HOH
726
3
HOH
HOH
726
C
HOH
727
3
HOH
HOH
727
C
HOH
730
3
HOH
HOH
730
C
HOH
732
3
HOH
HOH
732
C
HOH
740
3
HOH
HOH
740
C
HOH
742
3
HOH
HOH
742
C
HOH
753
3
HOH
HOH
753
C
HOH
756
3
HOH
HOH
756
C
HOH
759
3
HOH
HOH
759
C
HOH
764
3
HOH
HOH
764
C
HOH
768
3
HOH
HOH
768
C
HOH
771
3
HOH
HOH
771
C
HOH
780
3
HOH
HOH
780
C
HOH
792
3
HOH
HOH
792
C
HOH
794
3
HOH
HOH
794
C
HOH
797
3
HOH
HOH
797
C
HOH
800
3
HOH
HOH
800
C
HOH
803
3
HOH
HOH
803
C
HOH
806
3
HOH
HOH
806
C
HOH
808
3
HOH
HOH
808
C
HOH
816
3
HOH
HOH
816
C
HOH
833
3
HOH
HOH
833
C
HOH
834
3
HOH
HOH
834
C
HOH
839
3
HOH
HOH
839
C
HOH
846
3
HOH
HOH
846
C
HOH
605
3
HOH
HOH
605
D
HOH
612
3
HOH
HOH
612
D
HOH
614
3
HOH
HOH
614
D
HOH
616
3
HOH
HOH
616
D
HOH
618
3
HOH
HOH
618
D
HOH
632
3
HOH
HOH
632
D
HOH
643
3
HOH
HOH
643
D
HOH
645
3
HOH
HOH
645
D
HOH
646
3
HOH
HOH
646
D
HOH
649
3
HOH
HOH
649
D
HOH
653
3
HOH
HOH
653
D
HOH
655
3
HOH
HOH
655
D
HOH
660
3
HOH
HOH
660
D
HOH
662
3
HOH
HOH
662
D
HOH
679
3
HOH
HOH
679
D
HOH
681
3
HOH
HOH
681
D
HOH
691
3
HOH
HOH
691
D
HOH
701
3
HOH
HOH
701
D
HOH
703
3
HOH
HOH
703
D
HOH
704
3
HOH
HOH
704
D
HOH
705
3
HOH
HOH
705
D
HOH
709
3
HOH
HOH
709
D
HOH
711
3
HOH
HOH
711
D
HOH
715
3
HOH
HOH
715
D
HOH
718
3
HOH
HOH
718
D
HOH
719
3
HOH
HOH
719
D
HOH
728
3
HOH
HOH
728
D
HOH
731
3
HOH
HOH
731
D
HOH
735
3
HOH
HOH
735
D
HOH
736
3
HOH
HOH
736
D
HOH
737
3
HOH
HOH
737
D
HOH
748
3
HOH
HOH
748
D
HOH
769
3
HOH
HOH
769
D
HOH
779
3
HOH
HOH
779
D
HOH
781
3
HOH
HOH
781
D
HOH
783
3
HOH
HOH
783
D
HOH
785
3
HOH
HOH
785
D
HOH
787
3
HOH
HOH
787
D
HOH
790
3
HOH
HOH
790
D
HOH
791
3
HOH
HOH
791
D
HOH
799
3
HOH
HOH
799
D
HOH
802
3
HOH
HOH
802
D
HOH
821
3
HOH
HOH
821
D
HOH
824
3
HOH
HOH
824
D
HOH
825
3
HOH
HOH
825
D
HOH
827
3
HOH
HOH
827
D
HOH
828
3
HOH
HOH
828
D
HOH
829
3
HOH
HOH
829
D
HOH
835
3
HOH
HOH
835
D
HOH
840
3
HOH
HOH
840
D
HOH
842
3
HOH
HOH
842
D
HOH
603
3
HOH
HOH
603
E
HOH
610
3
HOH
HOH
610
E
HOH
615
3
HOH
HOH
615
E
HOH
622
3
HOH
HOH
622
E
HOH
624
3
HOH
HOH
624
E
HOH
628
3
HOH
HOH
628
E
HOH
630
3
HOH
HOH
630
E
HOH
641
3
HOH
HOH
641
E
HOH
647
3
HOH
HOH
647
E
HOH
658
3
HOH
HOH
658
E
HOH
663
3
HOH
HOH
663
E
HOH
665
3
HOH
HOH
665
E
HOH
667
3
HOH
HOH
667
E
HOH
668
3
HOH
HOH
668
E
HOH
672
3
HOH
HOH
672
E
HOH
673
3
HOH
HOH
673
E
HOH
678
3
HOH
HOH
678
E
HOH
682
3
HOH
HOH
682
E
HOH
685
3
HOH
HOH
685
E
HOH
687
3
HOH
HOH
687
E
HOH
693
3
HOH
HOH
693
E
HOH
695
3
HOH
HOH
695
E
HOH
707
3
HOH
HOH
707
E
HOH
710
3
HOH
HOH
710
E
HOH
713
3
HOH
HOH
713
E
HOH
716
3
HOH
HOH
716
E
HOH
721
3
HOH
HOH
721
E
HOH
733
3
HOH
HOH
733
E
HOH
741
3
HOH
HOH
741
E
HOH
746
3
HOH
HOH
746
E
HOH
749
3
HOH
HOH
749
E
HOH
751
3
HOH
HOH
751
E
HOH
766
3
HOH
HOH
766
E
HOH
775
3
HOH
HOH
775
E
HOH
782
3
HOH
HOH
782
E
HOH
784
3
HOH
HOH
784
E
HOH
789
3
HOH
HOH
789
E
HOH
793
3
HOH
HOH
793
E
HOH
795
3
HOH
HOH
795
E
HOH
801
3
HOH
HOH
801
E
HOH
807
3
HOH
HOH
807
E
HOH
811
3
HOH
HOH
811
E
HOH
818
3
HOH
HOH
818
E
HOH
819
3
HOH
HOH
819
E
HOH
831
3
HOH
HOH
831
E
HOH
843
3
HOH
HOH
843
E
THR
101
n
1
THR
101
A
PRO
102
n
2
PRO
102
A
ASP
103
n
3
ASP
103
A
CYS
104
n
4
CYS
104
A
VAL
105
n
5
VAL
105
A
THR
106
n
6
THR
106
A
GLY
107
n
7
GLY
107
A
LYS
108
n
8
LYS
108
A
VAL
109
n
9
VAL
109
A
GLU
110
n
10
GLU
110
A
TYR
111
n
11
TYR
111
A
THR
112
n
12
THR
112
A
LYS
113
n
13
LYS
113
A
TYR
114
n
14
TYR
114
A
ASN
115
n
15
ASN
115
A
ASP
116
n
16
ASP
116
A
GLU
117
n
17
GLU
117
A
ASP
118
n
18
ASP
118
A
THR
119
n
19
THR
119
A
PHE
120
n
20
PHE
120
A
THR
121
n
21
THR
121
A
VAL
122
n
22
VAL
122
A
LYS
123
n
23
LYS
123
A
VAL
124
n
24
VAL
124
A
GLY
125
n
25
GLY
125
A
ASP
126
n
26
ASP
126
A
LYS
127
n
27
LYS
127
A
GLU
128
n
28
GLU
128
A
LEU
129
n
29
LEU
129
A
PHE
130
n
30
PHE
130
A
THR
131
n
31
THR
131
A
ASN
132
n
32
ASN
132
A
ARG
133
n
33
ARG
133
A
ALA
134
n
34
ALA
134
A
ASN
135
n
35
ASN
135
A
LEU
136
n
36
LEU
136
A
GLN
137
n
37
GLN
137
A
SER
138
n
38
SER
138
A
LEU
139
n
39
LEU
139
A
LEU
140
n
40
LEU
140
A
LEU
141
n
41
LEU
141
A
SER
142
n
42
SER
142
A
ALA
143
n
43
ALA
143
A
GLN
144
n
44
GLN
144
A
ILE
145
n
45
ILE
145
A
THR
146
n
46
THR
146
A
GLY
147
n
47
GLY
147
A
MET
148
n
48
MET
148
A
THR
149
n
49
THR
149
A
VAL
150
n
50
VAL
150
A
THR
151
n
51
THR
151
A
ILE
152
n
52
ILE
152
A
LYS
153
n
53
LYS
153
A
THR
154
n
54
THR
154
A
ASN
155
n
55
ASN
155
A
ALA
156
n
56
ALA
156
A
CYS
157
n
57
CYS
157
A
HIS
158
n
58
HIS
158
A
ASN
159
n
59
ASN
159
A
GLY
160
n
60
GLY
160
A
GLY
161
n
61
GLY
161
A
GLY
162
n
62
GLY
162
A
PHE
163
n
63
PHE
163
A
SER
164
n
64
SER
164
A
GLU
165
n
65
GLU
165
A
VAL
166
n
66
VAL
166
A
ILE
167
n
67
ILE
167
A
PHE
168
n
68
PHE
168
A
ARG
169
n
69
ARG
169
A
THR
201
n
1
THR
201
B
PRO
202
n
2
PRO
202
B
ASP
203
n
3
ASP
203
B
CYS
204
n
4
CYS
204
B
VAL
205
n
5
VAL
205
B
THR
206
n
6
THR
206
B
GLY
207
n
7
GLY
207
B
LYS
208
n
8
LYS
208
B
VAL
209
n
9
VAL
209
B
GLU
210
n
10
GLU
210
B
TYR
211
n
11
TYR
211
B
THR
212
n
12
THR
212
B
LYS
213
n
13
LYS
213
B
TYR
214
n
14
TYR
214
B
ASN
215
n
15
ASN
215
B
ASP
216
n
16
ASP
216
B
GLU
217
n
17
GLU
217
B
ASP
218
n
18
ASP
218
B
THR
219
n
19
THR
219
B
PHE
220
n
20
PHE
220
B
THR
221
n
21
THR
221
B
VAL
222
n
22
VAL
222
B
LYS
223
n
23
LYS
223
B
VAL
224
n
24
VAL
224
B
GLY
225
n
25
GLY
225
B
ASP
226
n
26
ASP
226
B
LYS
227
n
27
LYS
227
B
GLU
228
n
28
GLU
228
B
LEU
229
n
29
LEU
229
B
PHE
230
n
30
PHE
230
B
THR
231
n
31
THR
231
B
ASN
232
n
32
ASN
232
B
ARG
233
n
33
ARG
233
B
ALA
234
n
34
ALA
234
B
ASN
235
n
35
ASN
235
B
LEU
236
n
36
LEU
236
B
GLN
237
n
37
GLN
237
B
SER
238
n
38
SER
238
B
LEU
239
n
39
LEU
239
B
LEU
240
n
40
LEU
240
B
LEU
241
n
41
LEU
241
B
SER
242
n
42
SER
242
B
ALA
243
n
43
ALA
243
B
GLN
244
n
44
GLN
244
B
ILE
245
n
45
ILE
245
B
THR
246
n
46
THR
246
B
GLY
247
n
47
GLY
247
B
MET
248
n
48
MET
248
B
THR
249
n
49
THR
249
B
VAL
250
n
50
VAL
250
B
THR
251
n
51
THR
251
B
ILE
252
n
52
ILE
252
B
LYS
253
n
53
LYS
253
B
THR
254
n
54
THR
254
B
ASN
255
n
55
ASN
255
B
ALA
256
n
56
ALA
256
B
CYS
257
n
57
CYS
257
B
HIS
258
n
58
HIS
258
B
ASN
259
n
59
ASN
259
B
GLY
260
n
60
GLY
260
B
GLY
261
n
61
GLY
261
B
GLY
262
n
62
GLY
262
B
PHE
263
n
63
PHE
263
B
SER
264
n
64
SER
264
B
GLU
265
n
65
GLU
265
B
VAL
266
n
66
VAL
266
B
ILE
267
n
67
ILE
267
B
PHE
268
n
68
PHE
268
B
ARG
269
n
69
ARG
269
B
THR
301
n
1
THR
301
C
PRO
302
n
2
PRO
302
C
ASP
303
n
3
ASP
303
C
CYS
304
n
4
CYS
304
C
VAL
305
n
5
VAL
305
C
THR
306
n
6
THR
306
C
GLY
307
n
7
GLY
307
C
LYS
308
n
8
LYS
308
C
VAL
309
n
9
VAL
309
C
GLU
310
n
10
GLU
310
C
TYR
311
n
11
TYR
311
C
THR
312
n
12
THR
312
C
LYS
313
n
13
LYS
313
C
TYR
314
n
14
TYR
314
C
ASN
315
n
15
ASN
315
C
ASP
316
n
16
ASP
316
C
GLU
317
n
17
GLU
317
C
ASP
318
n
18
ASP
318
C
THR
319
n
19
THR
319
C
PHE
320
n
20
PHE
320
C
THR
321
n
21
THR
321
C
VAL
322
n
22
VAL
322
C
LYS
323
n
23
LYS
323
C
VAL
324
n
24
VAL
324
C
GLY
325
n
25
GLY
325
C
ASP
326
n
26
ASP
326
C
LYS
327
n
27
LYS
327
C
GLU
328
n
28
GLU
328
C
LEU
329
n
29
LEU
329
C
PHE
330
n
30
PHE
330
C
THR
331
n
31
THR
331
C
ASN
332
n
32
ASN
332
C
ARG
333
n
33
ARG
333
C
ALA
334
n
34
ALA
334
C
ASN
335
n
35
ASN
335
C
LEU
336
n
36
LEU
336
C
GLN
337
n
37
GLN
337
C
SER
338
n
38
SER
338
C
LEU
339
n
39
LEU
339
C
LEU
340
n
40
LEU
340
C
LEU
341
n
41
LEU
341
C
SER
342
n
42
SER
342
C
ALA
343
n
43
ALA
343
C
GLN
344
n
44
GLN
344
C
ILE
345
n
45
ILE
345
C
THR
346
n
46
THR
346
C
GLY
347
n
47
GLY
347
C
MET
348
n
48
MET
348
C
THR
349
n
49
THR
349
C
VAL
350
n
50
VAL
350
C
THR
351
n
51
THR
351
C
ILE
352
n
52
ILE
352
C
LYS
353
n
53
LYS
353
C
THR
354
n
54
THR
354
C
ASN
355
n
55
ASN
355
C
ALA
356
n
56
ALA
356
C
CYS
357
n
57
CYS
357
C
HIS
358
n
58
HIS
358
C
ASN
359
n
59
ASN
359
C
GLY
360
n
60
GLY
360
C
GLY
361
n
61
GLY
361
C
GLY
362
n
62
GLY
362
C
PHE
363
n
63
PHE
363
C
SER
364
n
64
SER
364
C
GLU
365
n
65
GLU
365
C
VAL
366
n
66
VAL
366
C
ILE
367
n
67
ILE
367
C
PHE
368
n
68
PHE
368
C
ARG
369
n
69
ARG
369
C
THR
401
n
1
THR
401
D
PRO
402
n
2
PRO
402
D
ASP
403
n
3
ASP
403
D
CYS
404
n
4
CYS
404
D
VAL
405
n
5
VAL
405
D
THR
406
n
6
THR
406
D
GLY
407
n
7
GLY
407
D
LYS
408
n
8
LYS
408
D
VAL
409
n
9
VAL
409
D
GLU
410
n
10
GLU
410
D
TYR
411
n
11
TYR
411
D
THR
412
n
12
THR
412
D
LYS
413
n
13
LYS
413
D
TYR
414
n
14
TYR
414
D
ASN
415
n
15
ASN
415
D
ASP
416
n
16
ASP
416
D
GLU
417
n
17
GLU
417
D
ASP
418
n
18
ASP
418
D
THR
419
n
19
THR
419
D
PHE
420
n
20
PHE
420
D
THR
421
n
21
THR
421
D
VAL
422
n
22
VAL
422
D
LYS
423
n
23
LYS
423
D
VAL
424
n
24
VAL
424
D
GLY
425
n
25
GLY
425
D
ASP
426
n
26
ASP
426
D
LYS
427
n
27
LYS
427
D
GLU
428
n
28
GLU
428
D
LEU
429
n
29
LEU
429
D
PHE
430
n
30
PHE
430
D
THR
431
n
31
THR
431
D
ASN
432
n
32
ASN
432
D
ARG
433
n
33
ARG
433
D
ALA
434
n
34
ALA
434
D
ASN
435
n
35
ASN
435
D
LEU
436
n
36
LEU
436
D
GLN
437
n
37
GLN
437
D
SER
438
n
38
SER
438
D
LEU
439
n
39
LEU
439
D
LEU
440
n
40
LEU
440
D
LEU
441
n
41
LEU
441
D
SER
442
n
42
SER
442
D
ALA
443
n
43
ALA
443
D
GLN
444
n
44
GLN
444
D
ILE
445
n
45
ILE
445
D
THR
446
n
46
THR
446
D
GLY
447
n
47
GLY
447
D
MET
448
n
48
MET
448
D
THR
449
n
49
THR
449
D
VAL
450
n
50
VAL
450
D
THR
451
n
51
THR
451
D
ILE
452
n
52
ILE
452
D
LYS
453
n
53
LYS
453
D
THR
454
n
54
THR
454
D
ASN
455
n
55
ASN
455
D
ALA
456
n
56
ALA
456
D
CYS
457
n
57
CYS
457
D
HIS
458
n
58
HIS
458
D
ASN
459
n
59
ASN
459
D
GLY
460
n
60
GLY
460
D
GLY
461
n
61
GLY
461
D
GLY
462
n
62
GLY
462
D
PHE
463
n
63
PHE
463
D
SER
464
n
64
SER
464
D
GLU
465
n
65
GLU
465
D
VAL
466
n
66
VAL
466
D
ILE
467
n
67
ILE
467
D
PHE
468
n
68
PHE
468
D
ARG
469
n
69
ARG
469
D
THR
501
n
1
THR
501
E
PRO
502
n
2
PRO
502
E
ASP
503
n
3
ASP
503
E
CYS
504
n
4
CYS
504
E
VAL
505
n
5
VAL
505
E
THR
506
n
6
THR
506
E
GLY
507
n
7
GLY
507
E
LYS
508
n
8
LYS
508
E
VAL
509
n
9
VAL
509
E
GLU
510
n
10
GLU
510
E
TYR
511
n
11
TYR
511
E
THR
512
n
12
THR
512
E
LYS
513
n
13
LYS
513
E
TYR
514
n
14
TYR
514
E
ASN
515
n
15
ASN
515
E
ASP
516
n
16
ASP
516
E
GLU
517
n
17
GLU
517
E
ASP
518
n
18
ASP
518
E
THR
519
n
19
THR
519
E
PHE
520
n
20
PHE
520
E
THR
521
n
21
THR
521
E
VAL
522
n
22
VAL
522
E
LYS
523
n
23
LYS
523
E
VAL
524
n
24
VAL
524
E
GLY
525
n
25
GLY
525
E
ASP
526
n
26
ASP
526
E
LYS
527
n
27
LYS
527
E
GLU
528
n
28
GLU
528
E
LEU
529
n
29
LEU
529
E
PHE
530
n
30
PHE
530
E
THR
531
n
31
THR
531
E
ASN
532
n
32
ASN
532
E
ARG
533
n
33
ARG
533
E
ALA
534
n
34
ALA
534
E
ASN
535
n
35
ASN
535
E
LEU
536
n
36
LEU
536
E
GLN
537
n
37
GLN
537
E
SER
538
n
38
SER
538
E
LEU
539
n
39
LEU
539
E
LEU
540
n
40
LEU
540
E
LEU
541
n
41
LEU
541
E
SER
542
n
42
SER
542
E
ALA
543
n
43
ALA
543
E
GLN
544
n
44
GLN
544
E
ILE
545
n
45
ILE
545
E
THR
546
n
46
THR
546
E
GLY
547
n
47
GLY
547
E
MET
548
n
48
MET
548
E
THR
549
n
49
THR
549
E
VAL
550
n
50
VAL
550
E
THR
551
n
51
THR
551
E
ILE
552
n
52
ILE
552
E
LYS
553
n
53
LYS
553
E
THR
554
n
54
THR
554
E
ASN
555
n
55
ASN
555
E
ALA
556
n
56
ALA
556
E
CYS
557
n
57
CYS
557
E
HIS
558
n
58
HIS
558
E
ASN
559
n
59
ASN
559
E
GLY
560
n
60
GLY
560
E
GLY
561
n
61
GLY
561
E
GLY
562
n
62
GLY
562
E
PHE
563
n
63
PHE
563
E
SER
564
n
64
SER
564
E
GLU
565
n
65
GLU
565
E
VAL
566
n
66
VAL
566
E
ILE
567
n
67
ILE
567
E
PHE
568
n
68
PHE
568
E
ARG
569
n
69
ARG
569
E
author_and_software_defined_assembly
PISA
5
pentameric
10870
11
13500
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
127
A
O
LYS
27
A
N
VAL
124
A
N
VAL
24
A
O
THR
121
A
O
THR
21
A
N
LYS
113
A
N
LYS
13
A
O
GLU
165
A
O
GLU
65
A
N
LYS
153
A
N
LYS
53
A
O
VAL
150
A
O
VAL
50
A
N
GLY
107
A
N
GLY
7
B
O
LYS
227
B
O
LYS
27
B
N
VAL
224
B
N
VAL
24
B
O
THR
221
B
O
THR
21
B
N
LYS
213
B
N
LYS
13
B
O
GLU
265
B
O
GLU
65
B
N
LYS
253
B
N
LYS
53
B
O
VAL
250
B
O
VAL
50
B
N
GLY
207
B
N
GLY
7
C
O
LYS
327
C
O
LYS
27
C
N
VAL
324
C
N
VAL
24
C
O
THR
321
C
O
THR
21
C
N
LYS
313
C
N
LYS
13
C
O
GLU
365
C
O
GLU
65
C
N
LYS
353
C
N
LYS
53
C
O
VAL
350
C
O
VAL
50
C
N
GLY
307
C
N
GLY
7
D
O
LYS
427
D
O
LYS
27
D
N
VAL
424
D
N
VAL
24
D
O
THR
421
D
O
THR
21
D
N
LYS
413
D
N
LYS
13
D
O
GLU
465
D
O
GLU
65
D
N
LYS
453
D
N
LYS
53
D
O
VAL
450
D
O
VAL
50
D
N
GLY
407
D
N
GLY
7
E
O
LYS
527
E
O
LYS
27
E
N
VAL
524
E
N
VAL
24
E
O
THR
521
E
O
THR
21
E
N
LYS
513
E
N
LYS
13
E
O
GLU
565
E
O
GLU
65
E
N
LYS
553
E
N
LYS
53
E
O
VAL
550
E
O
VAL
50
E
N
GLY
507
E
N
GLY
7
1
F
C1
GLC
1
WRONG HAND
1
G
C1
GLC
1
WRONG HAND
1
H
C1
GLC
1
WRONG HAND
1
I
C1
GLC
1
WRONG HAND
1
J
C1
GLC
1
WRONG HAND
1
A
ALA
156
-95.15
57.97
1
A
SER
164
-141.02
-21.67
1
B
ALA
256
-94.27
59.71
1
B
SER
264
-140.28
-22.58
1
C
ALA
356
-92.88
59.64
1
D
ALA
456
-93.13
56.77
1
D
SER
464
-140.59
-21.64
1
E
ALA
556
-93.60
57.42
1
E
SER
564
-141.27
-21.80
22.26
4.319
-1.071
1.943
-2.845
0.197
-1.473
Maximum likelihood F target, with NCS restraints
0.218
0.193
2.00
25.8
1155
24420
22215
4.7
91.0
Thin Shells through whole resolution range
1
0.00
0.00
Engh & Huber
2.00
25.8
246
3076
170
0
2660
0.008
1.2
20.19
2.0
25.8
1D1K
24420
22215
0.0
0.0
0.062
1
12.17
1.73
91.0
0.33
2.00
2.03
400
1
1.6
41.1
data scaling
X-GEN
data reduction
X-GEN
phasing
AMoRE
refinement
CNS
SHIGA-LIKE TOXIN I SUBUNIT B MUTANT(D17E, W34A)
MUTATED SHIGA-LIKE TOXIN B SUBUNIT (D17E/W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
homopentamer, active as a pentamer
A
ALA
134
A
ALA
34
HELX_P
A
THR
146
A
THR
46
5
1
13
B
ALA
234
B
ALA
34
HELX_P
B
THR
246
B
THR
46
5
2
13
C
ALA
334
C
ALA
34
HELX_P
C
THR
346
C
THR
46
5
3
13
D
ALA
434
D
ALA
34
HELX_P
D
THR
446
D
THR
46
5
4
13
E
ALA
534
E
ALA
34
HELX_P
E
THR
546
E
THR
46
5
5
13
disulf
2.038
A
CYS
104
A
SG
CYS
4
1_555
A
CYS
157
A
SG
CYS
57
1_555
disulf
2.041
B
CYS
204
B
SG
CYS
4
1_555
B
CYS
257
B
SG
CYS
57
1_555
disulf
2.037
C
CYS
304
C
SG
CYS
4
1_555
C
CYS
357
C
SG
CYS
57
1_555
disulf
2.037
D
CYS
404
D
SG
CYS
4
1_555
D
CYS
457
D
SG
CYS
57
1_555
disulf
2.037
E
CYS
504
E
SG
CYS
4
1_555
E
CYS
557
E
SG
CYS
57
1_555
covale
1.387
both
F
GLC
1
F
O4
GLC
1_555
F
GAL
2
F
C1
GAL
1_555
covale
1.402
both
F
GAL
2
F
O4
GAL
1_555
F
GLA
3
F
C1
GLA
1_555
covale
1.384
both
G
GLC
1
G
O4
GLC
1_555
G
GAL
2
G
C1
GAL
1_555
covale
1.403
both
G
GAL
2
G
O4
GAL
1_555
G
GLA
3
G
C1
GLA
1_555
covale
1.389
both
H
GLC
1
H
O4
GLC
1_555
H
GAL
2
H
C1
GAL
1_555
covale
1.398
both
H
GAL
2
H
O4
GAL
1_555
H
GLA
3
H
C1
GLA
1_555
covale
1.384
both
I
GLC
1
I
O4
GLC
1_555
I
GAL
2
I
C1
GAL
1_555
covale
1.409
both
I
GAL
2
I
O4
GAL
1_555
I
GLA
3
I
C1
GLA
1_555
covale
1.386
both
J
GLC
1
J
O4
GLC
1_555
J
GAL
2
J
C1
GAL
1_555
covale
1.402
both
J
GAL
2
J
O4
GAL
1_555
J
GLA
3
J
C1
GLA
1_555
TOXIN
TOXIN, RECEPTOR BINDING, PROTEIN-CARBOHYDRATE RECOGNITION, OB-FOLD
SLTB_BPH30
UNP
1
P08027
21
89
1D1K
101
169
P08027
A
1
1
69
21
89
1D1K
201
269
P08027
B
1
1
69
21
89
1D1K
301
369
P08027
C
1
1
69
21
89
1D1K
401
469
P08027
D
1
1
69
21
89
1D1K
501
569
P08027
E
1
1
69
1
ASP
engineered mutation
GLU
117
1D1K
A
P08027
UNP
37
17
1
TRP
engineered mutation
ALA
134
1D1K
A
P08027
UNP
54
34
2
ASP
engineered mutation
GLU
217
1D1K
B
P08027
UNP
37
17
2
TRP
engineered mutation
ALA
234
1D1K
B
P08027
UNP
54
34
3
ASP
engineered mutation
GLU
317
1D1K
C
P08027
UNP
37
17
3
TRP
engineered mutation
ALA
334
1D1K
C
P08027
UNP
54
34
4
ASP
engineered mutation
GLU
417
1D1K
D
P08027
UNP
37
17
4
TRP
engineered mutation
ALA
434
1D1K
D
P08027
UNP
54
34
5
ASP
engineered mutation
GLU
517
1D1K
E
P08027
UNP
37
17
5
TRP
engineered mutation
ALA
534
1D1K
E
P08027
UNP
54
34
3
3
3
3
3
3
3
3
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
127
A
LYS
27
A
THR
131
A
THR
31
A
PHE
120
A
PHE
20
A
VAL
124
A
VAL
24
A
VAL
109
A
VAL
9
A
TYR
114
A
TYR
14
A
GLU
165
A
GLU
65
A
ARG
169
A
ARG
69
A
THR
149
A
THR
49
A
LYS
153
A
LYS
53
A
ASP
103
A
ASP
3
A
LYS
108
A
LYS
8
B
LYS
227
B
LYS
27
B
THR
231
B
THR
31
B
PHE
220
B
PHE
20
B
VAL
224
B
VAL
24
B
VAL
209
B
VAL
9
B
TYR
214
B
TYR
14
B
GLU
265
B
GLU
65
B
ARG
269
B
ARG
69
B
THR
249
B
THR
49
B
LYS
253
B
LYS
53
B
ASP
203
B
ASP
3
B
LYS
208
B
LYS
8
C
LYS
327
C
LYS
27
C
THR
331
C
THR
31
C
PHE
320
C
PHE
20
C
VAL
324
C
VAL
24
C
VAL
309
C
VAL
9
C
TYR
314
C
TYR
14
C
GLU
365
C
GLU
65
C
ARG
369
C
ARG
69
C
THR
349
C
THR
49
C
LYS
353
C
LYS
53
C
ASP
303
C
ASP
3
C
LYS
308
C
LYS
8
D
LYS
427
D
LYS
27
D
THR
431
D
THR
31
D
PHE
420
D
PHE
20
D
VAL
424
D
VAL
24
D
VAL
409
D
VAL
9
D
TYR
414
D
TYR
14
D
GLU
465
D
GLU
65
D
ARG
469
D
ARG
69
D
THR
449
D
THR
49
D
LYS
453
D
LYS
53
D
ASP
403
D
ASP
3
D
LYS
408
D
LYS
8
E
LYS
527
E
LYS
27
E
THR
531
E
THR
31
E
PHE
520
E
PHE
20
E
VAL
524
E
VAL
24
E
VAL
509
E
VAL
9
E
TYR
514
E
TYR
14
E
GLU
565
E
GLU
65
E
ARG
569
E
ARG
69
E
THR
549
E
THR
49
E
LYS
553
E
LYS
53
E
ASP
503
E
ASP
3
E
LYS
508
E
LYS
8
1
P 1