0.022613 0.003687 0.008399 0.000000 0.022959 0.008298 0.000000 0.000000 0.020634 0.00000 0.00000 0.00000 Ling, H. Brunton, J.L. Read, R.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 5 106.05 106.38 99.26 44.223 44.131 53.710 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 beta-D-galactopyranose D-saccharide, beta linking C6 H12 O6 180.156 alpha-D-galactopyranose D-saccharide, alpha linking C6 H12 O6 180.156 alpha-D-glucopyranose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Mutated Shiga-like toxin B subunit (D17E/W34A) complexed with receptor Gb3 analogue GLC F 1 HAS WRONG CHIRALITY AT ATOM C1 GLC G 1 HAS WRONG CHIRALITY AT ATOM C1 GLC H 1 HAS WRONG CHIRALITY AT ATOM C1 GLC I 1 HAS WRONG CHIRALITY AT ATOM C1 GLC J 1 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 AREA DETECTOR 1998-02-12 SIEMENS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE SIEMENS 7597.528 SHIGA-LIKE TOXIN I SUBUNIT B SHIGA TOXIN I BINDING DOMAIN D17E,W34A 5 man polymer 504.438 alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose 5 man branched 18.015 water 246 nat water no no TPDCVTGKVEYTKYNDEDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR TPDCVTGKVEYTKYNDEDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR A,B,C,D,E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 12371 Phage h30 562 Escherichia coli PLASMID 1 2.46 49.94 VAPOR DIFFUSION, HANGING DROP 7.5 0.4 M K,NA TARTRATE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 software struct_ref_seq_dif atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Source and taxonomy Refinement description Database references Advisory Atomic model Data collection Database references Derived calculations Structure summary 1 0 2000-09-20 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-07-18 1 4 2017-10-04 1 5 2018-03-14 2 0 2020-07-29 _struct_ref_seq_dif.details _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_seq_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details F GLC 192 n F GLC 1 F GAL 191 n F GAL 2 F GAL 190 n F GLA 3 F GLC 292 n G GLC 1 F GAL 291 n G GAL 2 F GAL 290 n G GLA 3 F GLC 392 n H GLC 1 F GAL 391 n H GAL 2 F GAL 390 n H GLA 3 F GLC 492 n I GLC 1 F GAL 491 n I GAL 2 F GAL 490 n I GLA 3 F GLC 592 n J GLC 1 F GAL 591 n J GAL 2 F GAL 590 n J GLA 3 DGalpb b-D-galactopyranose b-D-Galp Gal DGalpa a-D-galactopyranose a-D-Galp Gal DGlcpa a-D-glucopyranose a-D-Glcp Glc 1bos conains the wild type protein in complexed with the same trisaccharide. RCSB Y RCSB 1999-09-17 REL REL oligosaccharide DGalpa1-4DGalpb1-4DGlcpa1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5]/1-2-3/a4-b1_b4-c1 2 PDB2Glycan 1.1.0 WURCS [][b-D-Glcp]{[(4+1)][b-D-Galp]{[(4+1)][a-D-Galp]{}}} 2 PDB-CARE LINUCS C1 O4 GAL GLC 2 1 2 O1 HO4 sing C1 O4 GLA GAL 3 2 2 O1 HO4 sing n n n HOH water HOH 607 3 HOH HOH 607 A HOH 608 3 HOH HOH 608 A HOH 619 3 HOH HOH 619 A HOH 621 3 HOH HOH 621 A HOH 623 3 HOH HOH 623 A HOH 631 3 HOH HOH 631 A HOH 634 3 HOH HOH 634 A HOH 635 3 HOH HOH 635 A HOH 640 3 HOH HOH 640 A HOH 652 3 HOH HOH 652 A HOH 656 3 HOH HOH 656 A HOH 659 3 HOH HOH 659 A HOH 664 3 HOH HOH 664 A HOH 666 3 HOH HOH 666 A HOH 671 3 HOH HOH 671 A HOH 680 3 HOH HOH 680 A HOH 697 3 HOH HOH 697 A HOH 699 3 HOH HOH 699 A HOH 700 3 HOH HOH 700 A HOH 717 3 HOH HOH 717 A HOH 723 3 HOH HOH 723 A HOH 729 3 HOH HOH 729 A HOH 744 3 HOH HOH 744 A HOH 747 3 HOH HOH 747 A HOH 754 3 HOH HOH 754 A HOH 755 3 HOH HOH 755 A HOH 762 3 HOH HOH 762 A HOH 763 3 HOH HOH 763 A HOH 767 3 HOH HOH 767 A HOH 772 3 HOH HOH 772 A HOH 773 3 HOH HOH 773 A HOH 776 3 HOH HOH 776 A HOH 778 3 HOH HOH 778 A HOH 804 3 HOH HOH 804 A HOH 805 3 HOH HOH 805 A HOH 809 3 HOH HOH 809 A HOH 813 3 HOH HOH 813 A HOH 820 3 HOH HOH 820 A HOH 830 3 HOH HOH 830 A HOH 841 3 HOH HOH 841 A HOH 602 3 HOH HOH 602 B HOH 611 3 HOH HOH 611 B HOH 613 3 HOH HOH 613 B HOH 617 3 HOH HOH 617 B HOH 629 3 HOH HOH 629 B HOH 633 3 HOH HOH 633 B HOH 636 3 HOH HOH 636 B HOH 642 3 HOH HOH 642 B HOH 648 3 HOH HOH 648 B HOH 650 3 HOH HOH 650 B HOH 654 3 HOH HOH 654 B HOH 661 3 HOH HOH 661 B HOH 670 3 HOH HOH 670 B HOH 674 3 HOH HOH 674 B HOH 676 3 HOH HOH 676 B HOH 683 3 HOH HOH 683 B HOH 684 3 HOH HOH 684 B HOH 690 3 HOH HOH 690 B HOH 702 3 HOH HOH 702 B HOH 720 3 HOH HOH 720 B HOH 722 3 HOH HOH 722 B HOH 724 3 HOH HOH 724 B HOH 734 3 HOH HOH 734 B HOH 738 3 HOH HOH 738 B HOH 739 3 HOH HOH 739 B HOH 743 3 HOH HOH 743 B HOH 745 3 HOH HOH 745 B HOH 750 3 HOH HOH 750 B HOH 752 3 HOH HOH 752 B HOH 757 3 HOH HOH 757 B HOH 758 3 HOH HOH 758 B HOH 760 3 HOH HOH 760 B HOH 761 3 HOH HOH 761 B HOH 765 3 HOH HOH 765 B HOH 770 3 HOH HOH 770 B HOH 774 3 HOH HOH 774 B HOH 777 3 HOH HOH 777 B HOH 786 3 HOH HOH 786 B HOH 788 3 HOH HOH 788 B HOH 796 3 HOH HOH 796 B HOH 798 3 HOH HOH 798 B HOH 810 3 HOH HOH 810 B HOH 812 3 HOH HOH 812 B HOH 814 3 HOH HOH 814 B HOH 815 3 HOH HOH 815 B HOH 817 3 HOH HOH 817 B HOH 822 3 HOH HOH 822 B HOH 823 3 HOH HOH 823 B HOH 826 3 HOH HOH 826 B HOH 832 3 HOH HOH 832 B HOH 836 3 HOH HOH 836 B HOH 837 3 HOH HOH 837 B HOH 838 3 HOH HOH 838 B HOH 844 3 HOH HOH 844 B HOH 845 3 HOH HOH 845 B HOH 601 3 HOH HOH 601 C HOH 604 3 HOH HOH 604 C HOH 606 3 HOH HOH 606 C HOH 609 3 HOH HOH 609 C HOH 620 3 HOH HOH 620 C HOH 625 3 HOH HOH 625 C HOH 626 3 HOH HOH 626 C HOH 627 3 HOH HOH 627 C HOH 637 3 HOH HOH 637 C HOH 638 3 HOH HOH 638 C HOH 639 3 HOH HOH 639 C HOH 644 3 HOH HOH 644 C HOH 651 3 HOH HOH 651 C HOH 657 3 HOH HOH 657 C HOH 669 3 HOH HOH 669 C HOH 675 3 HOH HOH 675 C HOH 677 3 HOH HOH 677 C HOH 686 3 HOH HOH 686 C HOH 688 3 HOH HOH 688 C HOH 689 3 HOH HOH 689 C HOH 692 3 HOH HOH 692 C HOH 694 3 HOH HOH 694 C HOH 696 3 HOH HOH 696 C HOH 698 3 HOH HOH 698 C HOH 706 3 HOH HOH 706 C HOH 708 3 HOH HOH 708 C HOH 712 3 HOH HOH 712 C HOH 714 3 HOH HOH 714 C HOH 725 3 HOH HOH 725 C HOH 726 3 HOH HOH 726 C HOH 727 3 HOH HOH 727 C HOH 730 3 HOH HOH 730 C HOH 732 3 HOH HOH 732 C HOH 740 3 HOH HOH 740 C HOH 742 3 HOH HOH 742 C HOH 753 3 HOH HOH 753 C HOH 756 3 HOH HOH 756 C HOH 759 3 HOH HOH 759 C HOH 764 3 HOH HOH 764 C HOH 768 3 HOH HOH 768 C HOH 771 3 HOH HOH 771 C HOH 780 3 HOH HOH 780 C HOH 792 3 HOH HOH 792 C HOH 794 3 HOH HOH 794 C HOH 797 3 HOH HOH 797 C HOH 800 3 HOH HOH 800 C HOH 803 3 HOH HOH 803 C HOH 806 3 HOH HOH 806 C HOH 808 3 HOH HOH 808 C HOH 816 3 HOH HOH 816 C HOH 833 3 HOH HOH 833 C HOH 834 3 HOH HOH 834 C HOH 839 3 HOH HOH 839 C HOH 846 3 HOH HOH 846 C HOH 605 3 HOH HOH 605 D HOH 612 3 HOH HOH 612 D HOH 614 3 HOH HOH 614 D HOH 616 3 HOH HOH 616 D HOH 618 3 HOH HOH 618 D HOH 632 3 HOH HOH 632 D HOH 643 3 HOH HOH 643 D HOH 645 3 HOH HOH 645 D HOH 646 3 HOH HOH 646 D HOH 649 3 HOH HOH 649 D HOH 653 3 HOH HOH 653 D HOH 655 3 HOH HOH 655 D HOH 660 3 HOH HOH 660 D HOH 662 3 HOH HOH 662 D HOH 679 3 HOH HOH 679 D HOH 681 3 HOH HOH 681 D HOH 691 3 HOH HOH 691 D HOH 701 3 HOH HOH 701 D HOH 703 3 HOH HOH 703 D HOH 704 3 HOH HOH 704 D HOH 705 3 HOH HOH 705 D HOH 709 3 HOH HOH 709 D HOH 711 3 HOH HOH 711 D HOH 715 3 HOH HOH 715 D HOH 718 3 HOH HOH 718 D HOH 719 3 HOH HOH 719 D HOH 728 3 HOH HOH 728 D HOH 731 3 HOH HOH 731 D HOH 735 3 HOH HOH 735 D HOH 736 3 HOH HOH 736 D HOH 737 3 HOH HOH 737 D HOH 748 3 HOH HOH 748 D HOH 769 3 HOH HOH 769 D HOH 779 3 HOH HOH 779 D HOH 781 3 HOH HOH 781 D HOH 783 3 HOH HOH 783 D HOH 785 3 HOH HOH 785 D HOH 787 3 HOH HOH 787 D HOH 790 3 HOH HOH 790 D HOH 791 3 HOH HOH 791 D HOH 799 3 HOH HOH 799 D HOH 802 3 HOH HOH 802 D HOH 821 3 HOH HOH 821 D HOH 824 3 HOH HOH 824 D HOH 825 3 HOH HOH 825 D HOH 827 3 HOH HOH 827 D HOH 828 3 HOH HOH 828 D HOH 829 3 HOH HOH 829 D HOH 835 3 HOH HOH 835 D HOH 840 3 HOH HOH 840 D HOH 842 3 HOH HOH 842 D HOH 603 3 HOH HOH 603 E HOH 610 3 HOH HOH 610 E HOH 615 3 HOH HOH 615 E HOH 622 3 HOH HOH 622 E HOH 624 3 HOH HOH 624 E HOH 628 3 HOH HOH 628 E HOH 630 3 HOH HOH 630 E HOH 641 3 HOH HOH 641 E HOH 647 3 HOH HOH 647 E HOH 658 3 HOH HOH 658 E HOH 663 3 HOH HOH 663 E HOH 665 3 HOH HOH 665 E HOH 667 3 HOH HOH 667 E HOH 668 3 HOH HOH 668 E HOH 672 3 HOH HOH 672 E HOH 673 3 HOH HOH 673 E HOH 678 3 HOH HOH 678 E HOH 682 3 HOH HOH 682 E HOH 685 3 HOH HOH 685 E HOH 687 3 HOH HOH 687 E HOH 693 3 HOH HOH 693 E HOH 695 3 HOH HOH 695 E HOH 707 3 HOH HOH 707 E HOH 710 3 HOH HOH 710 E HOH 713 3 HOH HOH 713 E HOH 716 3 HOH HOH 716 E HOH 721 3 HOH HOH 721 E HOH 733 3 HOH HOH 733 E HOH 741 3 HOH HOH 741 E HOH 746 3 HOH HOH 746 E HOH 749 3 HOH HOH 749 E HOH 751 3 HOH HOH 751 E HOH 766 3 HOH HOH 766 E HOH 775 3 HOH HOH 775 E HOH 782 3 HOH HOH 782 E HOH 784 3 HOH HOH 784 E HOH 789 3 HOH HOH 789 E HOH 793 3 HOH HOH 793 E HOH 795 3 HOH HOH 795 E HOH 801 3 HOH HOH 801 E HOH 807 3 HOH HOH 807 E HOH 811 3 HOH HOH 811 E HOH 818 3 HOH HOH 818 E HOH 819 3 HOH HOH 819 E HOH 831 3 HOH HOH 831 E HOH 843 3 HOH HOH 843 E THR 101 n 1 THR 101 A PRO 102 n 2 PRO 102 A ASP 103 n 3 ASP 103 A CYS 104 n 4 CYS 104 A VAL 105 n 5 VAL 105 A THR 106 n 6 THR 106 A GLY 107 n 7 GLY 107 A LYS 108 n 8 LYS 108 A VAL 109 n 9 VAL 109 A GLU 110 n 10 GLU 110 A TYR 111 n 11 TYR 111 A THR 112 n 12 THR 112 A LYS 113 n 13 LYS 113 A TYR 114 n 14 TYR 114 A ASN 115 n 15 ASN 115 A ASP 116 n 16 ASP 116 A GLU 117 n 17 GLU 117 A ASP 118 n 18 ASP 118 A THR 119 n 19 THR 119 A PHE 120 n 20 PHE 120 A THR 121 n 21 THR 121 A VAL 122 n 22 VAL 122 A LYS 123 n 23 LYS 123 A VAL 124 n 24 VAL 124 A GLY 125 n 25 GLY 125 A ASP 126 n 26 ASP 126 A LYS 127 n 27 LYS 127 A GLU 128 n 28 GLU 128 A LEU 129 n 29 LEU 129 A PHE 130 n 30 PHE 130 A THR 131 n 31 THR 131 A ASN 132 n 32 ASN 132 A ARG 133 n 33 ARG 133 A ALA 134 n 34 ALA 134 A ASN 135 n 35 ASN 135 A LEU 136 n 36 LEU 136 A GLN 137 n 37 GLN 137 A SER 138 n 38 SER 138 A LEU 139 n 39 LEU 139 A LEU 140 n 40 LEU 140 A LEU 141 n 41 LEU 141 A SER 142 n 42 SER 142 A ALA 143 n 43 ALA 143 A GLN 144 n 44 GLN 144 A ILE 145 n 45 ILE 145 A THR 146 n 46 THR 146 A GLY 147 n 47 GLY 147 A MET 148 n 48 MET 148 A THR 149 n 49 THR 149 A VAL 150 n 50 VAL 150 A THR 151 n 51 THR 151 A ILE 152 n 52 ILE 152 A LYS 153 n 53 LYS 153 A THR 154 n 54 THR 154 A ASN 155 n 55 ASN 155 A ALA 156 n 56 ALA 156 A CYS 157 n 57 CYS 157 A HIS 158 n 58 HIS 158 A ASN 159 n 59 ASN 159 A GLY 160 n 60 GLY 160 A GLY 161 n 61 GLY 161 A GLY 162 n 62 GLY 162 A PHE 163 n 63 PHE 163 A SER 164 n 64 SER 164 A GLU 165 n 65 GLU 165 A VAL 166 n 66 VAL 166 A ILE 167 n 67 ILE 167 A PHE 168 n 68 PHE 168 A ARG 169 n 69 ARG 169 A THR 201 n 1 THR 201 B PRO 202 n 2 PRO 202 B ASP 203 n 3 ASP 203 B CYS 204 n 4 CYS 204 B VAL 205 n 5 VAL 205 B THR 206 n 6 THR 206 B GLY 207 n 7 GLY 207 B LYS 208 n 8 LYS 208 B VAL 209 n 9 VAL 209 B GLU 210 n 10 GLU 210 B TYR 211 n 11 TYR 211 B THR 212 n 12 THR 212 B LYS 213 n 13 LYS 213 B TYR 214 n 14 TYR 214 B ASN 215 n 15 ASN 215 B ASP 216 n 16 ASP 216 B GLU 217 n 17 GLU 217 B ASP 218 n 18 ASP 218 B THR 219 n 19 THR 219 B PHE 220 n 20 PHE 220 B THR 221 n 21 THR 221 B VAL 222 n 22 VAL 222 B LYS 223 n 23 LYS 223 B VAL 224 n 24 VAL 224 B GLY 225 n 25 GLY 225 B ASP 226 n 26 ASP 226 B LYS 227 n 27 LYS 227 B GLU 228 n 28 GLU 228 B LEU 229 n 29 LEU 229 B PHE 230 n 30 PHE 230 B THR 231 n 31 THR 231 B ASN 232 n 32 ASN 232 B ARG 233 n 33 ARG 233 B ALA 234 n 34 ALA 234 B ASN 235 n 35 ASN 235 B LEU 236 n 36 LEU 236 B GLN 237 n 37 GLN 237 B SER 238 n 38 SER 238 B LEU 239 n 39 LEU 239 B LEU 240 n 40 LEU 240 B LEU 241 n 41 LEU 241 B SER 242 n 42 SER 242 B ALA 243 n 43 ALA 243 B GLN 244 n 44 GLN 244 B ILE 245 n 45 ILE 245 B THR 246 n 46 THR 246 B GLY 247 n 47 GLY 247 B MET 248 n 48 MET 248 B THR 249 n 49 THR 249 B VAL 250 n 50 VAL 250 B THR 251 n 51 THR 251 B ILE 252 n 52 ILE 252 B LYS 253 n 53 LYS 253 B THR 254 n 54 THR 254 B ASN 255 n 55 ASN 255 B ALA 256 n 56 ALA 256 B CYS 257 n 57 CYS 257 B HIS 258 n 58 HIS 258 B ASN 259 n 59 ASN 259 B GLY 260 n 60 GLY 260 B GLY 261 n 61 GLY 261 B GLY 262 n 62 GLY 262 B PHE 263 n 63 PHE 263 B SER 264 n 64 SER 264 B GLU 265 n 65 GLU 265 B VAL 266 n 66 VAL 266 B ILE 267 n 67 ILE 267 B PHE 268 n 68 PHE 268 B ARG 269 n 69 ARG 269 B THR 301 n 1 THR 301 C PRO 302 n 2 PRO 302 C ASP 303 n 3 ASP 303 C CYS 304 n 4 CYS 304 C VAL 305 n 5 VAL 305 C THR 306 n 6 THR 306 C GLY 307 n 7 GLY 307 C LYS 308 n 8 LYS 308 C VAL 309 n 9 VAL 309 C GLU 310 n 10 GLU 310 C TYR 311 n 11 TYR 311 C THR 312 n 12 THR 312 C LYS 313 n 13 LYS 313 C TYR 314 n 14 TYR 314 C ASN 315 n 15 ASN 315 C ASP 316 n 16 ASP 316 C GLU 317 n 17 GLU 317 C ASP 318 n 18 ASP 318 C THR 319 n 19 THR 319 C PHE 320 n 20 PHE 320 C THR 321 n 21 THR 321 C VAL 322 n 22 VAL 322 C LYS 323 n 23 LYS 323 C VAL 324 n 24 VAL 324 C GLY 325 n 25 GLY 325 C ASP 326 n 26 ASP 326 C LYS 327 n 27 LYS 327 C GLU 328 n 28 GLU 328 C LEU 329 n 29 LEU 329 C PHE 330 n 30 PHE 330 C THR 331 n 31 THR 331 C ASN 332 n 32 ASN 332 C ARG 333 n 33 ARG 333 C ALA 334 n 34 ALA 334 C ASN 335 n 35 ASN 335 C LEU 336 n 36 LEU 336 C GLN 337 n 37 GLN 337 C SER 338 n 38 SER 338 C LEU 339 n 39 LEU 339 C LEU 340 n 40 LEU 340 C LEU 341 n 41 LEU 341 C SER 342 n 42 SER 342 C ALA 343 n 43 ALA 343 C GLN 344 n 44 GLN 344 C ILE 345 n 45 ILE 345 C THR 346 n 46 THR 346 C GLY 347 n 47 GLY 347 C MET 348 n 48 MET 348 C THR 349 n 49 THR 349 C VAL 350 n 50 VAL 350 C THR 351 n 51 THR 351 C ILE 352 n 52 ILE 352 C LYS 353 n 53 LYS 353 C THR 354 n 54 THR 354 C ASN 355 n 55 ASN 355 C ALA 356 n 56 ALA 356 C CYS 357 n 57 CYS 357 C HIS 358 n 58 HIS 358 C ASN 359 n 59 ASN 359 C GLY 360 n 60 GLY 360 C GLY 361 n 61 GLY 361 C GLY 362 n 62 GLY 362 C PHE 363 n 63 PHE 363 C SER 364 n 64 SER 364 C GLU 365 n 65 GLU 365 C VAL 366 n 66 VAL 366 C ILE 367 n 67 ILE 367 C PHE 368 n 68 PHE 368 C ARG 369 n 69 ARG 369 C THR 401 n 1 THR 401 D PRO 402 n 2 PRO 402 D ASP 403 n 3 ASP 403 D CYS 404 n 4 CYS 404 D VAL 405 n 5 VAL 405 D THR 406 n 6 THR 406 D GLY 407 n 7 GLY 407 D LYS 408 n 8 LYS 408 D VAL 409 n 9 VAL 409 D GLU 410 n 10 GLU 410 D TYR 411 n 11 TYR 411 D THR 412 n 12 THR 412 D LYS 413 n 13 LYS 413 D TYR 414 n 14 TYR 414 D ASN 415 n 15 ASN 415 D ASP 416 n 16 ASP 416 D GLU 417 n 17 GLU 417 D ASP 418 n 18 ASP 418 D THR 419 n 19 THR 419 D PHE 420 n 20 PHE 420 D THR 421 n 21 THR 421 D VAL 422 n 22 VAL 422 D LYS 423 n 23 LYS 423 D VAL 424 n 24 VAL 424 D GLY 425 n 25 GLY 425 D ASP 426 n 26 ASP 426 D LYS 427 n 27 LYS 427 D GLU 428 n 28 GLU 428 D LEU 429 n 29 LEU 429 D PHE 430 n 30 PHE 430 D THR 431 n 31 THR 431 D ASN 432 n 32 ASN 432 D ARG 433 n 33 ARG 433 D ALA 434 n 34 ALA 434 D ASN 435 n 35 ASN 435 D LEU 436 n 36 LEU 436 D GLN 437 n 37 GLN 437 D SER 438 n 38 SER 438 D LEU 439 n 39 LEU 439 D LEU 440 n 40 LEU 440 D LEU 441 n 41 LEU 441 D SER 442 n 42 SER 442 D ALA 443 n 43 ALA 443 D GLN 444 n 44 GLN 444 D ILE 445 n 45 ILE 445 D THR 446 n 46 THR 446 D GLY 447 n 47 GLY 447 D MET 448 n 48 MET 448 D THR 449 n 49 THR 449 D VAL 450 n 50 VAL 450 D THR 451 n 51 THR 451 D ILE 452 n 52 ILE 452 D LYS 453 n 53 LYS 453 D THR 454 n 54 THR 454 D ASN 455 n 55 ASN 455 D ALA 456 n 56 ALA 456 D CYS 457 n 57 CYS 457 D HIS 458 n 58 HIS 458 D ASN 459 n 59 ASN 459 D GLY 460 n 60 GLY 460 D GLY 461 n 61 GLY 461 D GLY 462 n 62 GLY 462 D PHE 463 n 63 PHE 463 D SER 464 n 64 SER 464 D GLU 465 n 65 GLU 465 D VAL 466 n 66 VAL 466 D ILE 467 n 67 ILE 467 D PHE 468 n 68 PHE 468 D ARG 469 n 69 ARG 469 D THR 501 n 1 THR 501 E PRO 502 n 2 PRO 502 E ASP 503 n 3 ASP 503 E CYS 504 n 4 CYS 504 E VAL 505 n 5 VAL 505 E THR 506 n 6 THR 506 E GLY 507 n 7 GLY 507 E LYS 508 n 8 LYS 508 E VAL 509 n 9 VAL 509 E GLU 510 n 10 GLU 510 E TYR 511 n 11 TYR 511 E THR 512 n 12 THR 512 E LYS 513 n 13 LYS 513 E TYR 514 n 14 TYR 514 E ASN 515 n 15 ASN 515 E ASP 516 n 16 ASP 516 E GLU 517 n 17 GLU 517 E ASP 518 n 18 ASP 518 E THR 519 n 19 THR 519 E PHE 520 n 20 PHE 520 E THR 521 n 21 THR 521 E VAL 522 n 22 VAL 522 E LYS 523 n 23 LYS 523 E VAL 524 n 24 VAL 524 E GLY 525 n 25 GLY 525 E ASP 526 n 26 ASP 526 E LYS 527 n 27 LYS 527 E GLU 528 n 28 GLU 528 E LEU 529 n 29 LEU 529 E PHE 530 n 30 PHE 530 E THR 531 n 31 THR 531 E ASN 532 n 32 ASN 532 E ARG 533 n 33 ARG 533 E ALA 534 n 34 ALA 534 E ASN 535 n 35 ASN 535 E LEU 536 n 36 LEU 536 E GLN 537 n 37 GLN 537 E SER 538 n 38 SER 538 E LEU 539 n 39 LEU 539 E LEU 540 n 40 LEU 540 E LEU 541 n 41 LEU 541 E SER 542 n 42 SER 542 E ALA 543 n 43 ALA 543 E GLN 544 n 44 GLN 544 E ILE 545 n 45 ILE 545 E THR 546 n 46 THR 546 E GLY 547 n 47 GLY 547 E MET 548 n 48 MET 548 E THR 549 n 49 THR 549 E VAL 550 n 50 VAL 550 E THR 551 n 51 THR 551 E ILE 552 n 52 ILE 552 E LYS 553 n 53 LYS 553 E THR 554 n 54 THR 554 E ASN 555 n 55 ASN 555 E ALA 556 n 56 ALA 556 E CYS 557 n 57 CYS 557 E HIS 558 n 58 HIS 558 E ASN 559 n 59 ASN 559 E GLY 560 n 60 GLY 560 E GLY 561 n 61 GLY 561 E GLY 562 n 62 GLY 562 E PHE 563 n 63 PHE 563 E SER 564 n 64 SER 564 E GLU 565 n 65 GLU 565 E VAL 566 n 66 VAL 566 E ILE 567 n 67 ILE 567 E PHE 568 n 68 PHE 568 E ARG 569 n 69 ARG 569 E author_and_software_defined_assembly PISA 5 pentameric 10870 11 13500 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 127 A O LYS 27 A N VAL 124 A N VAL 24 A O THR 121 A O THR 21 A N LYS 113 A N LYS 13 A O GLU 165 A O GLU 65 A N LYS 153 A N LYS 53 A O VAL 150 A O VAL 50 A N GLY 107 A N GLY 7 B O LYS 227 B O LYS 27 B N VAL 224 B N VAL 24 B O THR 221 B O THR 21 B N LYS 213 B N LYS 13 B O GLU 265 B O GLU 65 B N LYS 253 B N LYS 53 B O VAL 250 B O VAL 50 B N GLY 207 B N GLY 7 C O LYS 327 C O LYS 27 C N VAL 324 C N VAL 24 C O THR 321 C O THR 21 C N LYS 313 C N LYS 13 C O GLU 365 C O GLU 65 C N LYS 353 C N LYS 53 C O VAL 350 C O VAL 50 C N GLY 307 C N GLY 7 D O LYS 427 D O LYS 27 D N VAL 424 D N VAL 24 D O THR 421 D O THR 21 D N LYS 413 D N LYS 13 D O GLU 465 D O GLU 65 D N LYS 453 D N LYS 53 D O VAL 450 D O VAL 50 D N GLY 407 D N GLY 7 E O LYS 527 E O LYS 27 E N VAL 524 E N VAL 24 E O THR 521 E O THR 21 E N LYS 513 E N LYS 13 E O GLU 565 E O GLU 65 E N LYS 553 E N LYS 53 E O VAL 550 E O VAL 50 E N GLY 507 E N GLY 7 1 F C1 GLC 1 WRONG HAND 1 G C1 GLC 1 WRONG HAND 1 H C1 GLC 1 WRONG HAND 1 I C1 GLC 1 WRONG HAND 1 J C1 GLC 1 WRONG HAND 1 A ALA 156 -95.15 57.97 1 A SER 164 -141.02 -21.67 1 B ALA 256 -94.27 59.71 1 B SER 264 -140.28 -22.58 1 C ALA 356 -92.88 59.64 1 D ALA 456 -93.13 56.77 1 D SER 464 -140.59 -21.64 1 E ALA 556 -93.60 57.42 1 E SER 564 -141.27 -21.80 22.26 4.319 -1.071 1.943 -2.845 0.197 -1.473 Maximum likelihood F target, with NCS restraints 0.218 0.193 2.00 25.8 1155 24420 22215 4.7 91.0 Thin Shells through whole resolution range 1 0.00 0.00 Engh & Huber 2.00 25.8 246 3076 170 0 2660 0.008 1.2 20.19 2.0 25.8 1D1K 24420 22215 0.0 0.0 0.062 1 12.17 1.73 91.0 0.33 2.00 2.03 400 1 1.6 41.1 data scaling X-GEN data reduction X-GEN phasing AMoRE refinement CNS SHIGA-LIKE TOXIN I SUBUNIT B MUTANT(D17E, W34A) MUTATED SHIGA-LIKE TOXIN B SUBUNIT (D17E/W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N homopentamer, active as a pentamer A ALA 134 A ALA 34 HELX_P A THR 146 A THR 46 5 1 13 B ALA 234 B ALA 34 HELX_P B THR 246 B THR 46 5 2 13 C ALA 334 C ALA 34 HELX_P C THR 346 C THR 46 5 3 13 D ALA 434 D ALA 34 HELX_P D THR 446 D THR 46 5 4 13 E ALA 534 E ALA 34 HELX_P E THR 546 E THR 46 5 5 13 disulf 2.038 A CYS 104 A SG CYS 4 1_555 A CYS 157 A SG CYS 57 1_555 disulf 2.041 B CYS 204 B SG CYS 4 1_555 B CYS 257 B SG CYS 57 1_555 disulf 2.037 C CYS 304 C SG CYS 4 1_555 C CYS 357 C SG CYS 57 1_555 disulf 2.037 D CYS 404 D SG CYS 4 1_555 D CYS 457 D SG CYS 57 1_555 disulf 2.037 E CYS 504 E SG CYS 4 1_555 E CYS 557 E SG CYS 57 1_555 covale 1.387 both F GLC 1 F O4 GLC 1_555 F GAL 2 F C1 GAL 1_555 covale 1.402 both F GAL 2 F O4 GAL 1_555 F GLA 3 F C1 GLA 1_555 covale 1.384 both G GLC 1 G O4 GLC 1_555 G GAL 2 G C1 GAL 1_555 covale 1.403 both G GAL 2 G O4 GAL 1_555 G GLA 3 G C1 GLA 1_555 covale 1.389 both H GLC 1 H O4 GLC 1_555 H GAL 2 H C1 GAL 1_555 covale 1.398 both H GAL 2 H O4 GAL 1_555 H GLA 3 H C1 GLA 1_555 covale 1.384 both I GLC 1 I O4 GLC 1_555 I GAL 2 I C1 GAL 1_555 covale 1.409 both I GAL 2 I O4 GAL 1_555 I GLA 3 I C1 GLA 1_555 covale 1.386 both J GLC 1 J O4 GLC 1_555 J GAL 2 J C1 GAL 1_555 covale 1.402 both J GAL 2 J O4 GAL 1_555 J GLA 3 J C1 GLA 1_555 TOXIN TOXIN, RECEPTOR BINDING, PROTEIN-CARBOHYDRATE RECOGNITION, OB-FOLD SLTB_BPH30 UNP 1 P08027 21 89 1D1K 101 169 P08027 A 1 1 69 21 89 1D1K 201 269 P08027 B 1 1 69 21 89 1D1K 301 369 P08027 C 1 1 69 21 89 1D1K 401 469 P08027 D 1 1 69 21 89 1D1K 501 569 P08027 E 1 1 69 1 ASP engineered mutation GLU 117 1D1K A P08027 UNP 37 17 1 TRP engineered mutation ALA 134 1D1K A P08027 UNP 54 34 2 ASP engineered mutation GLU 217 1D1K B P08027 UNP 37 17 2 TRP engineered mutation ALA 234 1D1K B P08027 UNP 54 34 3 ASP engineered mutation GLU 317 1D1K C P08027 UNP 37 17 3 TRP engineered mutation ALA 334 1D1K C P08027 UNP 54 34 4 ASP engineered mutation GLU 417 1D1K D P08027 UNP 37 17 4 TRP engineered mutation ALA 434 1D1K D P08027 UNP 54 34 5 ASP engineered mutation GLU 517 1D1K E P08027 UNP 37 17 5 TRP engineered mutation ALA 534 1D1K E P08027 UNP 54 34 3 3 3 3 3 3 3 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 127 A LYS 27 A THR 131 A THR 31 A PHE 120 A PHE 20 A VAL 124 A VAL 24 A VAL 109 A VAL 9 A TYR 114 A TYR 14 A GLU 165 A GLU 65 A ARG 169 A ARG 69 A THR 149 A THR 49 A LYS 153 A LYS 53 A ASP 103 A ASP 3 A LYS 108 A LYS 8 B LYS 227 B LYS 27 B THR 231 B THR 31 B PHE 220 B PHE 20 B VAL 224 B VAL 24 B VAL 209 B VAL 9 B TYR 214 B TYR 14 B GLU 265 B GLU 65 B ARG 269 B ARG 69 B THR 249 B THR 49 B LYS 253 B LYS 53 B ASP 203 B ASP 3 B LYS 208 B LYS 8 C LYS 327 C LYS 27 C THR 331 C THR 31 C PHE 320 C PHE 20 C VAL 324 C VAL 24 C VAL 309 C VAL 9 C TYR 314 C TYR 14 C GLU 365 C GLU 65 C ARG 369 C ARG 69 C THR 349 C THR 49 C LYS 353 C LYS 53 C ASP 303 C ASP 3 C LYS 308 C LYS 8 D LYS 427 D LYS 27 D THR 431 D THR 31 D PHE 420 D PHE 20 D VAL 424 D VAL 24 D VAL 409 D VAL 9 D TYR 414 D TYR 14 D GLU 465 D GLU 65 D ARG 469 D ARG 69 D THR 449 D THR 49 D LYS 453 D LYS 53 D ASP 403 D ASP 3 D LYS 408 D LYS 8 E LYS 527 E LYS 27 E THR 531 E THR 31 E PHE 520 E PHE 20 E VAL 524 E VAL 24 E VAL 509 E VAL 9 E TYR 514 E TYR 14 E GLU 565 E GLU 65 E ARG 569 E ARG 69 E THR 549 E THR 49 E LYS 553 E LYS 53 E ASP 503 E ASP 3 E LYS 508 E LYS 8 1 P 1