0.016706 0.000000 0.000000 0.000000 0.014859 0.000000 0.000000 0.000000 0.010953 0.00000 0.00000 0.00000 Rupert, P.B. Mollah, A.K. Mossing, M.C. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 59.860 67.300 91.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N S N 291 N O N 292 N O N 293 N O N 294 N O N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N N Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 296 1079 1090 10.1006/jmbi.1999.3498 10686105 The structural basis for enhanced stability and reduced DNA binding seen in engineered second-generation Cro monomers and dimers. 2000 10.2210/pdb1d1l/pdb pdb_00001d1l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 IMAGE PLATE 1997-01-03 FUJI SINGLE WAVELENGTH M x-ray 1 0.98 1.0 A1 CHESS 0.98 SYNCHROTRON CHESS BEAMLINE A1 6882.875 LAMBDA CRO REPRESSOR LAMBDA CRO REPRESSOR F58W 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 15 nat water no no MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPWPSN MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPWPSN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lambda-like viruses Escherichia sample 10710 Enterobacteria phage lambda 562 Escherichia coli 1 3.34 63.16 VAPOR DIFFUSION, HANGING DROP 7.0 2.2 M NH4SO4, 6% isopropanol, including a layer of Hampton's "Al's oil", pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.K 298. struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Data collection Database references Derived calculations 1 0 1999-10-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-03-14 1 4 2024-02-07 _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure of Cro K56-[DGEVK]-F58W Mutant RCSB Y RCSB 1999-09-17 REL REL SO4 SULFATE ION HOH water SO4 200 2 SO4 SO4 200 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A GLN 3 n 3 GLN 3 A ARG 4 n 4 ARG 4 A ILE 5 n 5 ILE 5 A THR 6 n 6 THR 6 A LEU 7 n 7 LEU 7 A LYS 8 n 8 LYS 8 A ASP 9 n 9 ASP 9 A TYR 10 n 10 TYR 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A ARG 13 n 13 ARG 13 A PHE 14 n 14 PHE 14 A GLY 15 n 15 GLY 15 A GLN 16 n 16 GLN 16 A THR 17 n 17 THR 17 A LYS 18 n 18 LYS 18 A THR 19 n 19 THR 19 A ALA 20 n 20 ALA 20 A LYS 21 n 21 LYS 21 A ASP 22 n 22 ASP 22 A LEU 23 n 23 LEU 23 A GLY 24 n 24 GLY 24 A VAL 25 n 25 VAL 25 A TYR 26 n 26 TYR 26 A GLN 27 n 27 GLN 27 A SER 28 n 28 SER 28 A ALA 29 n 29 ALA 29 A ILE 30 n 30 ILE 30 A ASN 31 n 31 ASN 31 A LYS 32 n 32 LYS 32 A ALA 33 n 33 ALA 33 A ILE 34 n 34 ILE 34 A HIS 35 n 35 HIS 35 A ALA 36 n 36 ALA 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A LYS 39 n 39 LYS 39 A ILE 40 n 40 ILE 40 A PHE 41 n 41 PHE 41 A LEU 42 n 42 LEU 42 A THR 43 n 43 THR 43 A ILE 44 n 44 ILE 44 A ASN 45 n 45 ASN 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A GLY 48 n 48 GLY 48 A SER 49 n 49 SER 49 A VAL 50 n 50 VAL 50 A TYR 51 n 51 TYR 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A GLU 54 n 54 GLU 54 A VAL 55 n 55 VAL 55 A LYS 56 n 56 LYS 56 A PRO 57 n 57 PRO 57 A TRP 58 n 58 TRP 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ASN 61 n 61 ASN 61 A author_defined_assembly 2 dimeric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA,PQS 4 tetrameric 3420 -93 16660 6160 -59 13930 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14_555 -x+1/2,-y+1/2,z crystal symmetry operation 29.9300000000 33.6500000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -x,-y+1,z crystal symmetry operation 0.0000000000 67.3000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_565 x,-y+1,-z crystal symmetry operation 0.0000000000 67.3000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 x,-y+1/2,-z+1/2 crystal symmetry operation 0.0000000000 33.6500000000 45.6500000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_555 -x+1/2,y,-z+1/2 crystal symmetry operation 29.9300000000 0.0000000000 45.6500000000 A O ILE 5 A O ILE 5 A N LEU 42 A N LEU 42 A N THR 43 A N THR 43 A O TYR 51 A O TYR 51 1 -3.47 0.50 120.30 116.83 A A A NE CZ NH2 ARG ARG ARG 4 4 4 N 1 7.04 0.90 118.30 125.34 A A A CB CG OD1 ASP ASP ASP 22 22 22 N 1 -6.20 0.90 118.30 112.10 A A A CB CG OD2 ASP ASP ASP 22 22 22 N 1 -9.28 1.50 110.10 100.82 A A A CB CA C ALA ALA ALA 36 36 36 N 1 -6.81 0.90 118.30 111.49 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 6.78 1.10 102.60 109.38 A A A N CA CB PRO PRO PRO 59 59 59 N 1 A A CD OE2 GLU GLU 2 2 0.098 0.011 1.252 1.350 N 1 A A CD OE1 GLU GLU 53 53 -0.071 0.011 1.252 1.181 N 1 A A O O HOH HOH 106 106 0.95 1_555 2_565 Used weighted full matrix least squares procedure. 0.258 0.181 2.10 20.0 530 5703 5304 93 random 1 Engh & Huber 2.10 20.0 15 504 5 0 484 2.4 0.014 2.1 20.0 1D1L 24029 5304 1.5 1.5 0.044 1 4.5 93 phasing AMoRE refinement TNT 5E data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF CRO-F58W MUTANT 1 N N 2 N N 3 N N The biological assembly is a dimer constructed from chain A a symmetry partner generated by the two-fold. A LEU 7 A LEU 7 HELX_P A GLY 15 A GLY 15 1 1 9 A GLY 15 A GLY 15 HELX_P A GLY 24 A GLY 24 1 2 10 A GLN 27 A GLN 27 HELX_P A ALA 36 A ALA 36 1 3 10 VIRAL PROTEIN HELIX-TURN-HELIX, Viral protein A TRP 58 A TRP 58 1 A PRO 59 A PRO 59 7.23 RCRO_LAMBD UNP 1 P03040 1 61 1D1L 1 61 P03040 A 1 1 61 1 PHE engineered mutation TRP 58 1D1L A P03040 UNP 58 58 3 anti-parallel anti-parallel A GLN 3 A GLN 3 A THR 6 A THR 6 A ILE 40 A ILE 40 A ILE 44 A ILE 44 A VAL 50 A VAL 50 A GLU 54 A GLU 54 BINDING SITE FOR RESIDUE SO4 A 200 A SO4 200 Software 8 A GLY 15 A GLY 15 8 3_555 A GLN 16 A GLN 16 8 3_555 A THR 17 A THR 17 8 3_555 A LYS 21 A LYS 21 8 1_555 A SER 28 A SER 28 8 2_565 A LYS 32 A LYS 32 8 2_565 A HOH 104 C HOH 8 3_555 A HOH 108 C HOH 8 3_555 22 F 2 2 2