1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cahuzac, B.
Berthonneau, E.
Birlirakis, N.
Guittet, E.
Mirande, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
19
445
452
10.1093/emboj/19.3.445
10654942
A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases.
2000
10.2210/pdb1d2d/pdb
pdb_00001d2d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6721.820
TRNA SYNTHETASE
6.1.1.-
RESIDUES 1-59
1
man
polymer
TRNA LIGASE
no
no
MVYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKEYVPGLEHHHHHH
MVYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKEYVPGLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chinese hamster
Cricetulus
Escherichia
sample
10029
OVARY CELLS
Cricetulus griseus
562
Escherichia coli
PLASMID
PET28B
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-05-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
1999-09-23
REL
structures with the least restraint violations
40
5
2D NOESY
3D_15N-SEPARATED_NOESY
HNHA
7.0
1
atm
298
K
DISTANCE GEOMETRY SIMULATED ANNEALING
1
fewest violations
1.5 MM EPRS REPEAT U-15N; 20 MM POTASSIUM PHOSPHATE PH 7.0, 5 MM
DITHIOTHREITOL, 0.5 MM NAN3;
MSI CORP.
processing
Felix
97.0
BRUKER CORP.
collection
XwinNMR
2.5
DELSUC M.A.
processing
Gifa
4.0
GUNTERT P.
structure solution
DIANA
1.0
BRUNGER A.T.
refinement
X-PLOR
3.1
600
Bruker
DMX
800
Bruker
DRX
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
TYR
3
n
3
TYR
3
A
ASP
4
n
4
ASP
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
ALA
7
n
7
ALA
7
A
ALA
8
n
8
ALA
8
A
GLN
9
n
9
GLN
9
A
GLY
10
n
10
GLY
10
A
GLU
11
n
11
GLU
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ARG
14
n
14
ARG
14
A
LYS
15
n
15
LYS
15
A
LEU
16
n
16
LEU
16
A
LYS
17
n
17
LYS
17
A
ALA
18
n
18
ALA
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
PRO
22
n
22
PRO
22
A
LYS
23
n
23
LYS
23
A
ALA
24
n
24
ALA
24
A
LYS
25
n
25
LYS
25
A
VAL
26
n
26
VAL
26
A
THR
27
n
27
THR
27
A
GLU
28
n
28
GLU
28
A
ALA
29
n
29
ALA
29
A
VAL
30
n
30
VAL
30
A
GLU
31
n
31
GLU
31
A
CYS
32
n
32
CYS
32
A
LEU
33
n
33
LEU
33
A
LEU
34
n
34
LEU
34
A
SER
35
n
35
SER
35
A
LEU
36
n
36
LEU
36
A
LYS
37
n
37
LYS
37
A
ALA
38
n
38
ALA
38
A
GLU
39
n
39
GLU
39
A
TYR
40
n
40
TYR
40
A
LYS
41
n
41
LYS
41
A
GLU
42
n
42
GLU
42
A
LYS
43
n
43
LYS
43
A
THR
44
n
44
THR
44
A
GLY
45
n
45
GLY
45
A
LYS
46
n
46
LYS
46
A
GLU
47
n
47
GLU
47
A
TYR
48
n
48
TYR
48
A
VAL
49
n
49
VAL
49
A
PRO
50
n
50
PRO
50
A
GLY
51
n
51
GLY
51
A
LEU
52
n
52
LEU
52
A
GLU
53
n
53
GLU
53
A
HIS
54
n
54
HIS
54
A
HIS
55
n
55
HIS
55
A
HIS
56
n
56
HIS
56
A
n
57
57
A
n
58
58
A
n
59
59
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HIS
57
A
HIS
57
1
Y
1
A
HIS
58
A
HIS
58
1
Y
1
A
HIS
59
A
HIS
59
1
Y
2
A
HIS
57
A
HIS
57
1
Y
2
A
HIS
58
A
HIS
58
1
Y
2
A
HIS
59
A
HIS
59
1
Y
3
A
HIS
57
A
HIS
57
1
Y
3
A
HIS
58
A
HIS
58
1
Y
3
A
HIS
59
A
HIS
59
1
Y
4
A
HIS
57
A
HIS
57
1
Y
4
A
HIS
58
A
HIS
58
1
Y
4
A
HIS
59
A
HIS
59
1
Y
5
A
HIS
57
A
HIS
57
1
Y
5
A
HIS
58
A
HIS
58
1
Y
5
A
HIS
59
A
HIS
59
1
Y
1
A
ASP
4
-66.23
-111.12
1
A
ALA
8
-36.18
-70.89
1
A
LYS
20
75.01
102.53
1
A
TYR
40
-54.21
-89.02
1
A
LYS
41
32.98
45.06
1
A
GLU
42
-67.67
-73.93
1
A
LYS
43
-175.26
42.71
1
A
THR
44
-134.45
-68.61
1
A
LYS
46
63.50
106.00
1
A
PRO
50
-87.99
-70.50
1
A
GLU
53
58.20
97.08
1
A
HIS
54
67.00
135.83
2
A
VAL
2
-83.87
-159.52
2
A
ASP
4
-73.79
-93.14
2
A
LYS
20
75.52
97.34
2
A
TYR
40
-67.32
-91.07
2
A
LYS
41
34.02
46.33
2
A
GLU
42
-70.08
-76.05
2
A
LYS
43
-173.27
41.91
2
A
THR
44
-136.66
-67.10
2
A
LYS
46
62.43
102.47
2
A
TYR
48
-40.43
150.93
2
A
LEU
52
-87.14
-82.85
2
A
HIS
54
77.03
142.59
3
A
VAL
2
70.25
160.73
3
A
ASP
4
-70.59
-101.25
3
A
ALA
8
-37.11
-70.55
3
A
LYS
20
74.95
102.84
3
A
TYR
40
-61.86
-88.29
3
A
LYS
41
27.96
45.10
3
A
GLU
42
-69.28
-71.22
3
A
LYS
43
-175.09
45.06
3
A
THR
44
-139.67
-69.32
3
A
LYS
46
60.60
104.98
3
A
TYR
48
-39.49
155.96
3
A
LEU
52
-78.70
-75.33
3
A
HIS
54
72.67
82.17
4
A
ASP
4
-68.31
-105.45
4
A
ALA
8
-36.02
-74.72
4
A
LYS
20
75.36
104.32
4
A
TYR
40
-48.77
-88.49
4
A
LYS
41
29.00
46.22
4
A
GLU
42
-72.74
-71.00
4
A
LYS
43
-172.18
44.46
4
A
THR
44
-137.62
-72.37
4
A
LYS
46
61.97
105.51
4
A
TYR
48
-39.46
143.28
4
A
LEU
52
-81.26
-84.09
4
A
HIS
54
73.68
94.50
5
A
ASP
4
-70.43
-103.80
5
A
ALA
8
-36.06
-70.87
5
A
LYS
20
74.90
101.07
5
A
TYR
40
-58.12
-89.66
5
A
LYS
41
28.51
48.03
5
A
LYS
43
-173.23
45.99
5
A
THR
44
-140.37
-71.33
5
A
LYS
46
64.33
103.21
5
A
LEU
52
-82.84
-75.70
5
A
HIS
54
81.22
112.59
Hamster EprS second repeated element. NMR, 5 structures
1
N
N
A
TYR
3
A
TYR
3
HELX_P
A
GLU
19
A
GLU
19
1
1
17
A
PRO
22
A
PRO
22
HELX_P
A
LYS
41
A
LYS
41
1
2
20
LIGASE
TRNA SYNTHETASE (LIGASE), PROTEIN TRANSCRIPTION, LIGASE
SYEP_CRIGR
UNP
1
1
Q7SIA2
1
49
1D2D
3
51
Q7SIA2
A
1
3
51
1
P 1