0.035562
0.000000
0.000000
0.000000
0.035562
0.000000
0.000000
0.000000
0.018875
0.00000
0.00000
0.00000
Gao, Y.-G.
Liaw, Y.-C.
Li, Y.-K.
Van Der Marel, G.A.
Van Boom, J.H.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.120
28.120
52.980
C11 H17 N6 O6 P
360.263
n
N2-METHYL 2'-DEOXYADENOSINE 5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C33 H39 N O13
657.662
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
MAR70; DAUNOMYCIN DERIVATIVE
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Y
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
N
Y
8
N
N
Y
9
N
N
Y
10
N
N
N
11
N
N
N
12
N
P
N
13
N
O
N
14
N
O
N
15
N
O
N
16
N
C
N
17
R
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
S
C
N
22
N
O
N
23
N
O
N
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
O
N
43
N
P
N
44
N
O
N
45
N
O
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
O
N
50
S
C
N
51
N
O
N
52
N
C
N
53
R
C
N
54
N
N
N
55
N
C
N
56
N
O
N
57
N
N
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
C
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
O
N
77
N
P
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
O
N
84
S
C
N
85
N
O
N
86
N
C
N
87
R
C
Y
88
N
N
Y
89
N
C
Y
90
N
N
Y
91
N
C
N
92
N
C
N
93
N
O
N
94
N
N
N
95
N
C
N
96
N
N
N
97
N
N
Y
98
N
C
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
O
N
114
N
P
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
O
N
121
S
C
N
122
N
O
N
123
N
C
N
124
R
C
N
125
N
N
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
O
N
150
N
H
N
151
N
H
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
C
N
156
N
O
Y
157
N
C
N
158
N
C
N
159
N
O
Y
160
N
C
Y
161
N
C
N
162
N
O
Y
163
N
C
N
164
S
C
N
165
N
O
N
166
N
C
N
167
S
C
N
168
N
O
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
Y
173
N
C
Y
174
N
C
N
175
N
O
Y
176
N
C
N
177
N
C
N
178
N
O
Y
179
N
C
N
180
N
C
N
181
R
C
N
182
N
C
N
183
S
C
N
184
N
N
N
185
S
C
N
186
N
O
N
187
S
C
N
188
N
O
N
189
N
C
N
190
S
C
N
191
N
C
N
192
S
C
N
193
N
O
N
194
R
C
N
195
N
O
N
196
S
C
N
197
N
O
N
198
N
C
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
MG
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
Y
5
N
sing
Y
6
N
doub
Y
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
Y
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
doub
Y
158
N
sing
N
159
N
sing
Y
160
N
sing
N
161
N
sing
Y
162
N
doub
N
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
doub
N
169
N
doub
N
170
N
sing
Y
171
N
doub
Y
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
88
4845
4849
10.1073/pnas.88.11.4845
2052564
Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct.
1991
UK
Anti-Cancer Drug Des.
ACDDEA
0807
0266-9536
6
137
Influence of Aglycone Modifications on the Binding of Anthracycline Drugs to DNA: The Molecular Structure of Idarubicin and 4-O-Demethyl-11-Deoxydoxorubicin Complexed to d(CGATCG)
1991
10.2210/pdb1d35/pdb
pdb_00001d35
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ROOM TEMPERATURE
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
1838.258
DNA (5'-D(*CP*GP*TP*(A40)P*CP*G)-3')
1
syn
polymer
657.662
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
68
nat
water
no
yes
(DC)(DG)(DT)(A40)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.85
56.82
VAPOR DIFFUSION
6.00
pH 6.00, VAPOR DIFFUSION, temperature 295.00K
295.00
WATER
1
MPD
1
HCHO
1
BACL2
1
NA CACODYLATE
1
SPERMINE
1
WATER
2
MPD
2
5.746
1
19
A
1
A
6
-2.666
A_DC1:DG6_A
1
1.516
0.160
0.009
-0.184
-18.335
1
19
A
2
A
5
0.271
A_DG2:DC5_A
2
3.010
-0.110
-0.399
-0.082
-3.943
1
20
A
3
A
4
-3.209
A_DT3:A404_A
3
-4.287
-0.035
-0.033
-0.122
3.943
1
20
A
4
A
3
-3.209
A_A404:DT3_A
4
-4.287
0.035
-0.033
-0.122
18.335
1
19
A
5
A
2
0.271
A_DC5:DG2_A
5
3.010
0.110
-0.399
-0.082
-5.746
1
19
A
6
A
1
-2.666
A_DG6:DC1_A
6
1.516
-0.160
0.009
-0.184
7.043
35.585
A
A
1
2
-4.421
A
A
6
5
7.099
-2.698
1.102
1.196
AA_DC1DG2:DC5DG6_AA
1
2.046
-3.352
35.429
2.808
-1.158
3.178
29.568
A
A
2
3
-5.314
A
A
5
4
3.057
-2.702
-1.336
-0.031
AA_DG2DT3:A404DC5_AA
2
-3.391
6.667
29.255
0.489
1.928
3.064
35.954
A
A
3
4
15.004
A
A
4
3
3.236
9.166
0.000
-0.293
AA_DT3A404:DT3A404_AA
3
0.000
0.000
34.804
-1.755
0.000
3.178
29.568
A
A
4
5
-5.314
A
A
3
2
3.057
-2.702
1.336
-0.031
AA_A404DC5:DG2DT3_AA
4
3.391
-6.667
29.255
0.489
-1.928
7.043
35.585
A
A
5
6
-4.421
A
A
2
1
7.099
-2.698
-1.102
1.196
AA_DC5DG6:DC1DG2_AA
5
-2.046
3.352
35.429
2.808
1.158
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Structure summary
1
0
1992-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1991-04-23
REL
MAR
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
MG
MAGNESIUM ION
HOH
water
MAR
4
2
MAR
MAR
7
A
MG
8
3
MG
MG
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
+A
4
n
4
A40
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O6
MAR
1_555
75.5
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O4
MAR
1_555
124.5
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O4
MAR
1_555
51.3
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
89.7
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
95.0
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
81.1
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
105.2
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
106.1
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
104.0
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
156.6
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
112.7
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
153.6
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
109.9
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
61.2
A
HOH
10
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
96.0
A
A40
4
A
A40
4
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.1200000000
28.1200000000
26.4900000000
1
A
A
OP2
O
DC
HOH
5
63
2.00
1
A
A
O
O
HOH
HOH
36
63
2.19
1
8.84
1.20
119.70
128.54
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
-5.77
0.80
102.40
96.63
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
4.45
0.30
108.30
112.75
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.72
0.50
111.50
115.22
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-4.22
0.60
127.20
122.98
A
A
A
C2
N3
C4
DT
DT
DT
3
3
3
N
1
-5.20
0.80
109.40
104.20
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
8.48
0.30
108.30
116.78
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-4.53
0.60
128.60
124.07
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
O
O
HOH
HOH
73
76
2.00
1_555
5_555
0.174
1.300
2599
1
2.000
TR
isotropic
TR
isotropic
TR
isotropic
1.300
68
238
50
120
0
fix
fix
fix
1.300
1D35
2599
2.000
1
refinement
NUCLSQ
FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.605
both
A
DT
3
A
O3'
DT
3
1_555
A
A40
4
A
P
A40
4
1_555
covale
1.604
one
A
A40
4
A
O3'
A40
4
1_555
A
DC
5
A
P
DC
5
1_555
covale
1.495
none
A
A40
4
A
CH2
A40
4
1_555
A
MAR
7
B
N3'
MAR
1_555
metalc
2.748
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
metalc
3.028
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
metalc
2.929
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
metalc
2.990
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
metalc
2.866
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
metalc
2.797
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
A40
4
A
N1
A40
4
8_665
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
A40
4
A
N6
A40
4
8_665
hydrog
WATSON-CRICK
A
A40
4
A
N1
A40
4
1_555
A
DT
3
A
N3
DT
3
8_665
hydrog
WATSON-CRICK
A
A40
4
A
N6
A40
4
1_555
A
DT
3
A
O4
DT
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
1D35
PDB
1
1D35
1
6
1D35
1
6
1D35
A
1
1
6
BINDING SITE FOR RESIDUE MAR A 7
A
MAR
7
Software
12
BINDING SITE FOR RESIDUE MG A 8
A
MG
8
Software
5
A
DC
1
A
DC
1
12
8_665
A
DG
2
A
DG
2
12
8_665
A
DT
3
A
DT
3
12
8_665
A
A40
4
A
A40
4
12
1_555
A
A40
4
A
A40
4
12
8_665
A
DC
5
A
DC
5
12
1_555
A
DG
6
A
DG
6
12
1_555
A
MG
8
C
MG
12
1_555
A
HOH
17
D
HOH
12
1_555
A
HOH
38
D
HOH
12
1_555
A
HOH
69
D
HOH
12
1_555
A
HOH
74
D
HOH
12
1_555
A
DG
6
A
DG
6
5
1_555
A
MAR
7
B
MAR
5
1_555
A
HOH
9
D
HOH
5
1_555
A
HOH
10
D
HOH
5
1_555
A
HOH
11
D
HOH
5
1_555
92
P 41 21 2