12.10
9.364
20.016
22.840
A
O5'
DC
1
ATOM
A
O5'
DC
1
1
1.00
1
O
11.61
9.682
21.104
23.714
A
C5'
DC
1
ATOM
A
C5'
DC
1
1
1.00
1
C
11.44
11.127
21.003
24.143
A
C4'
DC
1
ATOM
A
C4'
DC
1
1
1.00
1
C
11.13
11.265
19.844
24.954
A
O4'
DC
1
ATOM
A
O4'
DC
1
1
1.00
1
O
11.47
12.176
20.888
23.046
A
C3'
DC
1
ATOM
A
C3'
DC
1
1
1.00
1
C
11.91
13.318
21.711
23.327
A
O3'
DC
1
ATOM
A
O3'
DC
1
1
1.00
1
O
11.14
12.522
19.392
23.041
A
C2'
DC
1
ATOM
A
C2'
DC
1
1
1.00
1
C
10.64
12.339
19.032
24.524
A
C1'
DC
1
ATOM
A
C1'
DC
1
1
1.00
1
C
10.18
11.965
17.620
24.636
A
N1
DC
1
ATOM
A
N1
DC
1
1
1.00
1
N
9.86
12.969
16.670
24.736
A
C2
DC
1
ATOM
A
C2
DC
1
1
1.00
1
C
9.84
14.139
17.027
24.758
A
O2
DC
1
ATOM
A
O2
DC
1
1
1.00
1
O
9.49
12.589
15.368
24.779
A
N3
DC
1
ATOM
A
N3
DC
1
1
1.00
1
N
9.68
11.287
14.982
24.736
A
C4
DC
1
ATOM
A
C4
DC
1
1
1.00
1
C
9.59
10.972
13.703
24.758
A
N4
DC
1
ATOM
A
N4
DC
1
1
1.00
1
N
9.77
10.250
15.969
24.652
A
C5
DC
1
ATOM
A
C5
DC
1
1
1.00
1
C
9.93
10.643
17.246
24.599
A
C6
DC
1
ATOM
A
C6
DC
1
1
1.00
1
C
14.66
13.936
22.876
22.448
A
P
DG
2
ATOM
A
P
DG
1
2
1.00
1
P
15.31
14.887
23.573
23.279
A
OP1
DG
2
ATOM
A
OP1
DG
1
2
1.00
1
O
14.70
12.862
23.610
21.711
A
OP2
DG
2
ATOM
A
OP2
DG
1
2
1.00
1
O
13.01
14.707
22.001
21.303
A
O5'
DG
2
ATOM
A
O5'
DG
1
2
1.00
1
O
12.30
15.958
21.349
21.621
A
C5'
DG
2
ATOM
A
C5'
DG
1
2
1.00
1
C
12.16
16.366
20.581
20.387
A
C4'
DG
2
ATOM
A
C4'
DG
1
2
1.00
1
C
11.64
15.533
19.437
20.222
A
O4'
DG
2
ATOM
A
O4'
DG
1
2
1.00
1
O
12.05
16.265
21.343
19.073
A
C3'
DG
2
ATOM
A
C3'
DG
1
2
1.00
1
C
13.05
17.344
20.989
18.204
A
O3'
DG
2
ATOM
A
O3'
DG
1
2
1.00
1
O
11.86
14.912
20.871
18.511
A
C2'
DG
2
ATOM
A
C2'
DG
1
2
1.00
1
C
11.28
15.084
19.392
18.856
A
C1'
DG
2
ATOM
A
C1'
DG
1
2
1.00
1
C
10.42
13.877
18.596
18.686
A
N9
DG
2
ATOM
A
N9
DG
1
2
1.00
1
N
10.46
12.561
18.964
18.654
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
10.30
11.743
17.960
18.479
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
9.83
12.570
16.847
18.336
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
9.68
12.297
15.472
18.140
A
C6
DG
2
ATOM
A
C6
DG
1
2
1.00
1
C
9.49
11.175
14.929
18.024
A
O6
DG
2
ATOM
A
O6
DG
1
2
1.00
1
O
9.31
13.399
14.656
18.109
A
N1
DG
2
ATOM
A
N1
DG
1
2
1.00
1
N
9.19
14.665
15.154
18.236
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
8.86
15.657
14.257
18.193
A
N2
DG
2
ATOM
A
N2
DG
1
2
1.00
1
N
9.51
14.965
16.445
18.400
A
N3
DG
2
ATOM
A
N3
DG
1
2
1.00
1
N
10.02
13.877
17.224
18.469
A
C4
DG
2
ATOM
A
C4
DG
1
2
1.00
1
C
17.28
18.036
21.959
17.139
A
P
DT
3
ATOM
A
P
DT
1
3
1.00
1
P
17.27
18.610
23.132
17.860
A
OP1
DT
3
ATOM
A
OP1
DT
1
3
1.00
1
O
17.12
16.965
22.209
16.143
A
OP2
DT
3
ATOM
A
OP2
DT
1
3
1.00
1
O
13.26
19.231
21.076
16.567
A
O5'
DT
3
ATOM
A
O5'
DT
1
3
1.00
1
O
12.54
20.095
20.325
17.430
A
C5'
DT
3
ATOM
A
C5'
DT
1
3
1.00
1
C
12.12
20.159
18.908
16.890
A
C4'
DT
3
ATOM
A
C4'
DT
1
3
1.00
1
C
11.72
18.914
18.267
17.012
A
O4'
DT
3
ATOM
A
O4'
DT
1
3
1.00
1
O
11.92
20.578
18.773
15.417
A
C3'
DT
3
ATOM
A
C3'
DT
1
3
1.00
1
C
12.25
21.894
18.233
15.354
A
O3'
DT
3
ATOM
A
O3'
DT
1
3
1.00
1
O
11.82
19.572
17.837
14.797
A
C2'
DT
3
ATOM
A
C2'
DT
1
3
1.00
1
C
11.40
18.790
17.288
15.936
A
C1'
DT
3
ATOM
A
C1'
DT
1
3
1.00
1
C
10.89
17.361
17.159
15.608
A
N1
DT
3
ATOM
A
N1
DT
1
3
1.00
1
N
10.58
16.894
15.860
15.470
A
C2
DT
3
ATOM
A
C2
DT
1
3
1.00
1
C
10.56
17.662
14.926
15.603
A
O2
DT
3
ATOM
A
O2
DT
1
3
1.00
1
O
10.39
15.570
15.683
15.205
A
N3
DT
3
ATOM
A
N3
DT
1
3
1.00
1
N
10.32
14.693
16.717
15.089
A
C4
DT
3
ATOM
A
C4
DT
1
3
1.00
1
C
9.92
13.489
16.447
14.871
A
O4
DT
3
ATOM
A
O4
DT
1
3
1.00
1
O
10.42
15.193
18.047
15.221
A
C5
DT
3
ATOM
A
C5
DT
1
3
1.00
1
C
10.52
14.237
19.209
15.083
A
C7
DT
3
ATOM
A
C7
DT
1
3
1.00
1
C
10.73
16.498
18.219
15.497
A
C6
DT
3
ATOM
A
C6
DT
1
3
1.00
1
C
9.51
15.117
13.495
11.613
A
N1
A40
4
HETATM
A
N1
A40
1
4
1.00
1
N
9.54
16.132
12.612
11.560
A
C2
A40
4
HETATM
A
C2
A40
1
4
1.00
1
C
9.54
17.640
14.232
11.724
A
C4
A40
4
HETATM
A
C4
A40
1
4
1.00
1
C
9.39
16.689
15.213
11.809
A
C5
A40
4
HETATM
A
C5
A40
1
4
1.00
1
C
9.43
15.320
14.836
11.730
A
C6
A40
4
HETATM
A
C6
A40
1
4
1.00
1
C
9.57
18.554
16.220
11.920
A
C8
A40
4
HETATM
A
C8
A40
1
4
1.00
1
C
9.99
15.781
11.315
11.433
A
N2
A40
4
HETATM
A
N2
A40
1
4
1.00
1
N
9.64
17.451
12.896
11.592
A
N3
A40
4
HETATM
A
N3
A40
1
4
1.00
1
N
9.65
18.857
14.892
11.783
A
N9
A40
4
HETATM
A
N9
A40
1
4
1.00
1
N
9.54
17.263
16.481
11.920
A
N7
A40
4
HETATM
A
N7
A40
1
4
1.00
1
N
9.30
14.299
15.663
11.783
A
N6
A40
4
HETATM
A
N6
A40
1
4
1.00
1
N
14.09
22.794
18.126
14.029
A
P
A40
4
HETATM
A
P
A40
1
4
1.00
1
P
14.47
24.178
17.896
14.538
A
O1P
A40
4
HETATM
A
O1P
A40
1
4
1.00
1
O
14.91
22.454
19.271
13.240
A
O2P
A40
4
HETATM
A
O2P
A40
1
4
1.00
1
O
11.07
22.173
16.793
13.340
A
O5'
A40
4
HETATM
A
O5'
A40
1
4
1.00
1
O
10.39
22.648
15.587
13.950
A
C5'
A40
4
HETATM
A
C5'
A40
1
4
1.00
1
C
10.35
22.088
14.456
13.128
A
C4'
A40
4
HETATM
A
C4'
A40
1
4
1.00
1
C
10.15
20.691
14.423
13.160
A
O4'
A40
4
HETATM
A
O4'
A40
1
4
1.00
1
O
9.85
20.179
14.265
11.799
A
C1'
A40
4
HETATM
A
C1'
A40
1
4
1.00
1
C
10.15
21.222
14.932
10.951
A
C2'
A40
4
HETATM
A
C2'
A40
1
4
1.00
1
C
10.32
22.499
14.538
11.634
A
C3'
A40
4
HETATM
A
C3'
A40
1
4
1.00
1
C
11.09
23.042
13.267
11.269
A
O3'
A40
4
HETATM
A
O3'
A40
1
4
1.00
1
O
10.34
16.956
10.455
11.332
A
CH2
A40
4
HETATM
A
CH2
A40
1
4
1.00
1
C
14.65
23.700
12.938
9.844
A
P
DC
5
ATOM
A
P
DC
1
5
1.00
1
P
14.79
24.605
11.794
9.966
A
OP1
DC
5
ATOM
A
OP1
DC
1
5
1.00
1
O
14.87
24.211
14.265
9.452
A
OP2
DC
5
ATOM
A
OP2
DC
1
5
1.00
1
O
11.19
22.465
12.615
8.879
A
O5'
DC
5
ATOM
A
O5'
DC
1
5
1.00
1
O
10.82
21.849
11.307
9.007
A
C5'
DC
5
ATOM
A
C5'
DC
1
5
1.00
1
C
10.63
20.694
11.341
8.021
A
C4'
DC
5
ATOM
A
C4'
DC
1
5
1.00
1
C
10.46
19.673
12.159
8.593
A
O4'
DC
5
ATOM
A
O4'
DC
1
5
1.00
1
O
10.70
20.986
11.912
6.633
A
C3'
DC
5
ATOM
A
C3'
DC
1
5
1.00
1
C
11.01
20.384
11.119
5.595
A
O3'
DC
5
ATOM
A
O3'
DC
1
5
1.00
1
O
10.40
20.353
13.298
6.681
A
C2'
DC
5
ATOM
A
C2'
DC
1
5
1.00
1
C
10.26
19.144
12.946
7.571
A
C1'
DC
5
ATOM
A
C1'
DC
1
5
1.00
1
C
9.92
18.438
14.158
7.973
A
N1
DC
5
ATOM
A
N1
DC
1
5
1.00
1
N
9.72
17.066
13.970
8.207
A
C2
DC
5
ATOM
A
C2
DC
1
5
1.00
1
C
9.54
16.641
12.826
8.207
A
O2
DC
5
ATOM
A
O2
DC
1
5
1.00
1
O
9.69
16.315
15.058
8.450
A
N3
DC
5
ATOM
A
N3
DC
1
5
1.00
1
N
9.71
16.852
16.318
8.514
A
C4
DC
5
ATOM
A
C4
DC
1
5
1.00
1
C
9.72
16.048
17.356
8.763
A
N4
DC
5
ATOM
A
N4
DC
1
5
1.00
1
N
9.89
18.239
16.506
8.265
A
C5
DC
5
ATOM
A
C5
DC
1
5
1.00
1
C
9.85
18.975
15.413
8.016
A
C6
DC
5
ATOM
A
C6
DC
1
5
1.00
1
C
13.69
21.225
10.022
4.789
A
P
DG
6
ATOM
A
P
DG
1
6
1.00
1
P
14.10
21.953
9.052
5.621
A
OP1
DG
6
ATOM
A
OP1
DG
1
6
1.00
1
O
15.37
22.035
10.888
3.889
A
OP2
DG
6
ATOM
A
OP2
DG
1
6
1.00
1
O
11.65
20.072
9.243
3.958
A
O5'
DG
6
ATOM
A
O5'
DG
1
6
1.00
1
O
10.62
19.189
8.298
4.572
A
C5'
DG
6
ATOM
A
C5'
DG
1
6
1.00
1
C
10.45
18.151
7.854
3.571
A
C4'
DG
6
ATOM
A
C4'
DG
1
6
1.00
1
C
10.22
17.311
8.908
3.158
A
O4'
DG
6
ATOM
A
O4'
DG
1
6
1.00
1
O
10.17
18.750
7.286
2.273
A
C3'
DG
6
ATOM
A
C3'
DG
1
6
1.00
1
C
10.60
17.971
6.200
1.801
A
O3'
DG
6
ATOM
A
O3'
DG
1
6
1.00
1
O
10.08
18.804
8.520
1.377
A
C2'
DG
6
ATOM
A
C2'
DG
1
6
1.00
1
C
9.80
17.533
9.226
1.743
A
C1'
DG
6
ATOM
A
C1'
DG
1
6
1.00
1
C
9.36
17.597
10.686
1.648
A
N9
DG
6
ATOM
A
N9
DG
1
6
1.00
1
N
9.53
18.663
11.515
1.722
A
C8
DG
6
ATOM
A
C8
DG
1
6
1.00
1
C
9.62
18.354
12.789
1.732
A
N7
DG
6
ATOM
A
N7
DG
1
6
1.00
1
N
9.28
16.968
12.783
1.648
A
C5
DG
6
ATOM
A
C5
DG
1
6
1.00
1
C
9.15
16.020
13.852
1.600
A
C6
DG
6
ATOM
A
C6
DG
1
6
1.00
1
C
9.40
16.326
15.050
1.605
A
O6
DG
6
ATOM
A
O6
DG
1
6
1.00
1
O
8.97
14.729
13.453
1.542
A
N1
DG
6
ATOM
A
N1
DG
1
6
1.00
1
N
8.84
14.355
12.142
1.526
A
C2
DG
6
ATOM
A
C2
DG
1
6
1.00
1
C
8.79
13.045
11.886
1.468
A
N2
DG
6
ATOM
A
N2
DG
1
6
1.00
1
N
8.87
15.190
11.091
1.574
A
N3
DG
6
ATOM
A
N3
DG
1
6
1.00
1
N
9.24
16.478
11.507
1.611
A
C4
DG
6
ATOM
A
C4
DG
1
6
1.00
1
C
10.77
15.258
18.419
5.102
A
C1
MAR
7
HETATM
B
C1
MAR
2
1.00
1
C
10.96
16.402
19.206
5.113
A
C2
MAR
7
HETATM
B
C2
MAR
2
1.00
1
C
11.09
17.727
18.632
5.102
A
C3
MAR
7
HETATM
B
C3
MAR
2
1.00
1
C
10.77
17.859
17.170
5.033
A
C4
MAR
7
HETATM
B
C4
MAR
2
1.00
1
C
11.23
19.012
16.537
5.012
A
O4
MAR
7
HETATM
B
O4
MAR
2
1.00
1
O
10.55
16.630
16.450
5.023
A
C5
MAR
7
HETATM
B
C5
MAR
2
1.00
1
C
10.08
16.715
14.951
4.938
A
C6
MAR
7
HETATM
B
C6
MAR
2
1.00
1
C
10.59
17.758
14.285
4.890
A
O6
MAR
7
HETATM
B
O6
MAR
2
1.00
1
O
9.84
15.429
14.198
4.932
A
C7
MAR
7
HETATM
B
C7
MAR
2
1.00
1
C
9.58
15.480
12.814
4.895
A
C8
MAR
7
HETATM
B
C8
MAR
2
1.00
1
C
9.71
16.602
12.139
4.895
A
O8
MAR
7
HETATM
B
O8
MAR
2
1.00
1
O
9.63
14.243
12.117
4.864
A
C9
MAR
7
HETATM
B
C9
MAR
2
1.00
1
C
10.09
14.316
10.548
4.890
A
C10
MAR
7
HETATM
B
C10
MAR
2
1.00
1
C
10.37
14.943
10.376
6.236
A
O10
MAR
7
HETATM
B
O10
MAR
2
1.00
1
O
9.99
13.006
9.876
4.773
A
C11
MAR
7
HETATM
B
C11
MAR
2
1.00
1
C
10.22
11.810
10.587
5.351
A
C12
MAR
7
HETATM
B
C12
MAR
2
1.00
1
C
9.86
11.920
10.666
6.829
A
O12
MAR
7
HETATM
B
O12
MAR
2
1.00
1
O
10.34
10.517
9.834
5.139
A
C13
MAR
7
HETATM
B
C13
MAR
2
1.00
1
C
11.25
9.879
10.025
4.101
A
O13
MAR
7
HETATM
B
O13
MAR
2
1.00
1
O
10.74
10.028
8.745
6.103
A
C14
MAR
7
HETATM
B
C14
MAR
2
1.00
1
C
9.76
11.675
12.069
4.858
A
C15
MAR
7
HETATM
B
C15
MAR
2
1.00
1
C
9.63
12.986
12.713
4.879
A
C16
MAR
7
HETATM
B
C16
MAR
2
1.00
1
C
9.51
12.986
14.119
4.922
A
C17
MAR
7
HETATM
B
C17
MAR
2
1.00
1
C
9.71
11.760
14.777
4.932
A
O17
MAR
7
HETATM
B
O17
MAR
2
1.00
1
O
9.76
14.116
14.906
4.948
A
C18
MAR
7
HETATM
B
C18
MAR
2
1.00
1
C
10.00
14.108
16.357
5.001
A
C19
MAR
7
HETATM
B
C19
MAR
2
1.00
1
C
10.35
13.067
17.032
5.007
A
O19
MAR
7
HETATM
B
O19
MAR
2
1.00
1
O
10.38
15.396
17.027
5.023
A
C20
MAR
7
HETATM
B
C20
MAR
2
1.00
1
C
11.30
20.277
17.336
5.272
A
C21
MAR
7
HETATM
B
C21
MAR
2
1.00
1
C
11.15
15.823
9.336
6.485
A
C1'
MAR
7
HETATM
B
C1'
MAR
2
1.00
1
C
11.30
16.855
9.679
7.523
A
C2'
MAR
7
HETATM
B
C2'
MAR
2
1.00
1
C
11.75
16.200
9.842
8.927
A
C3'
MAR
7
HETATM
B
C3'
MAR
2
1.00
1
C
11.14
17.330
10.044
9.944
A
N3'
MAR
7
HETATM
B
N3'
MAR
2
1.00
1
N
12.19
15.407
8.577
9.261
A
C4'
MAR
7
HETATM
B
C4'
MAR
2
1.00
1
C
13.72
16.374
7.500
9.473
A
O4'
MAR
7
HETATM
B
O4'
MAR
2
1.00
1
O
12.04
14.341
8.329
8.217
A
C5'
MAR
7
HETATM
B
C5'
MAR
2
1.00
1
C
11.46
15.047
8.132
6.882
A
O5'
MAR
7
HETATM
B
O5'
MAR
2
1.00
1
O
11.93
13.531
7.024
8.366
A
C6'
MAR
7
HETATM
B
C6'
MAR
2
1.00
1
C
14.90
15.958
6.462
10.358
A
CB1
MAR
7
HETATM
B
CB1
MAR
2
1.00
1
C
15.59
16.580
5.152
10.013
A
CB2
MAR
7
HETATM
B
CB2
MAR
2
1.00
1
C
16.08
18.101
5.062
10.342
A
CB3
MAR
7
HETATM
B
CB3
MAR
2
1.00
1
C
16.75
18.365
3.597
10.188
A
OB3
MAR
7
HETATM
B
OB3
MAR
2
1.00
1
O
16.09
18.354
5.531
11.777
A
CB4
MAR
7
HETATM
B
CB4
MAR
2
1.00
1
C
16.84
19.813
5.427
11.995
A
OB4
MAR
7
HETATM
B
OB4
MAR
2
1.00
1
O
15.88
17.806
6.926
11.984
A
CB5
MAR
7
HETATM
B
CB5
MAR
2
1.00
1
C
15.44
16.324
6.864
11.735
A
OB5
MAR
7
HETATM
B
OB5
MAR
2
1.00
1
O
15.92
17.904
7.435
13.446
A
CB6
MAR
7
HETATM
B
CB6
MAR
2
1.00
1
C
22.67
19.853
14.842
2.776
A
MG
MG
8
HETATM
C
MG
MG
3
1.00
1
MG
25.55
18.180
16.807
1.266
A
O
HOH
9
HETATM
D
O
HOH
4
1.00
1
O
27.72
22.268
13.613
3.709
A
O
HOH
10
HETATM
D
O
HOH
4
1.00
1
O
30.67
21.065
16.408
0.800
A
O
HOH
11
HETATM
D
O
HOH
4
1.00
1
O
28.95
16.664
19.228
11.905
A
O
HOH
12
HETATM
D
O
HOH
4
1.00
1
O
33.12
10.978
17.485
11.878
A
O
HOH
13
HETATM
D
O
HOH
4
1.00
1
O
35.99
19.968
20.210
8.122
A
O
HOH
14
HETATM
D
O
HOH
4
1.00
1
O
21.93
22.578
15.885
7.550
A
O
HOH
15
HETATM
D
O
HOH
4
1.00
1
O
29.44
10.163
5.315
7.264
A
O
HOH
16
HETATM
D
O
HOH
4
1.00
1
O
54.71
11.827
19.470
5.097
A
O
HOH
17
HETATM
D
O
HOH
4
1.00
1
O
42.35
9.983
20.918
2.681
A
O
HOH
18
HETATM
D
O
HOH
4
1.00
1
O
23.28
9.167
11.943
1.632
A
O
HOH
19
HETATM
D
O
HOH
4
1.00
1
O
42.96
11.476
9.721
1.203
A
O
HOH
20
HETATM
D
O
HOH
4
1.00
1
O
22.27
14.172
8.458
1.430
A
O
HOH
21
HETATM
D
O
HOH
4
1.00
1
O
49.38
25.772
15.936
12.795
A
O
HOH
22
HETATM
D
O
HOH
4
1.00
1
O
40.92
17.207
20.145
9.097
A
O
HOH
23
HETATM
D
O
HOH
4
1.00
1
O
40.08
17.215
24.692
7.094
A
O
HOH
24
HETATM
D
O
HOH
4
1.00
1
O
47.52
27.217
10.154
12.800
A
O
HOH
25
HETATM
D
O
HOH
4
1.00
1
O
43.97
7.980
13.149
24.805
A
O
HOH
26
HETATM
D
O
HOH
4
1.00
1
O
23.92
17.361
21.315
13.505
A
O
HOH
27
HETATM
D
O
HOH
4
1.00
1
O
33.81
21.711
18.393
8.721
A
O
HOH
28
HETATM
D
O
HOH
4
1.00
1
O
48.15
11.285
24.703
8.477
A
O
HOH
29
HETATM
D
O
HOH
4
1.00
1
O
35.64
5.843
8.776
6.220
A
O
HOH
30
HETATM
D
O
HOH
4
1.00
1
O
43.89
22.923
10.795
0.461
A
O
HOH
31
HETATM
D
O
HOH
4
1.00
1
O
44.49
19.926
21.309
12.090
A
O
HOH
32
HETATM
D
O
HOH
4
1.00
1
O
51.22
8.757
1.398
2.278
A
O
HOH
33
HETATM
D
O
HOH
4
1.00
1
O
54.64
8.408
17.803
10.781
A
O
HOH
34
HETATM
D
O
HOH
4
1.00
1
O
45.04
14.482
6.586
4.228
A
O
HOH
35
HETATM
D
O
HOH
4
1.00
1
O
39.98
24.220
18.286
9.780
A
O
HOH
36
HETATM
D
O
HOH
4
1.00
1
O
40.76
13.236
18.871
11.147
A
O
HOH
37
HETATM
D
O
HOH
4
1.00
1
O
36.47
16.366
5.731
6.172
A
O
HOH
38
HETATM
D
O
HOH
4
1.00
1
O
40.56
19.248
5.219
7.184
A
O
HOH
39
HETATM
D
O
HOH
4
1.00
1
O
50.05
12.629
4.170
5.759
A
O
HOH
40
HETATM
D
O
HOH
4
1.00
1
O
56.24
2.337
13.554
12.265
A
O
HOH
41
HETATM
D
O
HOH
4
1.00
1
O
49.46
27.707
12.291
1.669
A
O
HOH
42
HETATM
D
O
HOH
4
1.00
1
O
47.39
11.181
22.139
9.309
A
O
HOH
43
HETATM
D
O
HOH
4
1.00
1
O
57.52
2.680
11.813
9.128
A
O
HOH
44
HETATM
D
O
HOH
4
1.00
1
O
52.16
9.797
19.316
8.705
A
O
HOH
45
HETATM
D
O
HOH
4
1.00
1
O
61.95
16.433
-0.396
7.513
A
O
HOH
46
HETATM
D
O
HOH
4
1.00
1
O
40.58
6.768
19.091
6.220
A
O
HOH
47
HETATM
D
O
HOH
4
1.00
1
O
50.91
6.929
8.349
3.460
A
O
HOH
48
HETATM
D
O
HOH
4
1.00
1
O
57.10
9.159
6.305
3.454
A
O
HOH
49
HETATM
D
O
HOH
4
1.00
1
O
48.68
11.375
3.327
2.072
A
O
HOH
50
HETATM
D
O
HOH
4
1.00
1
O
62.54
28.682
15.913
14.236
A
O
HOH
51
HETATM
D
O
HOH
4
1.00
1
O
51.98
6.330
12.634
0.784
A
O
HOH
52
HETATM
D
O
HOH
4
1.00
1
O
47.63
11.037
5.720
0.800
A
O
HOH
53
HETATM
D
O
HOH
4
1.00
1
O
60.09
7.865
5.042
-0.450
A
O
HOH
54
HETATM
D
O
HOH
4
1.00
1
O
63.58
12.854
21.425
12.270
A
O
HOH
55
HETATM
D
O
HOH
4
1.00
1
O
46.28
24.214
9.029
11.428
A
O
HOH
56
HETATM
D
O
HOH
4
1.00
1
O
60.57
13.529
3.107
9.642
A
O
HOH
57
HETATM
D
O
HOH
4
1.00
1
O
59.74
25.077
11.990
2.596
A
O
HOH
58
HETATM
D
O
HOH
4
1.00
1
O
26.96
5.925
16.835
7.332
A
O
HOH
59
HETATM
D
O
HOH
4
1.00
1
O
51.31
3.892
14.591
7.629
A
O
HOH
60
HETATM
D
O
HOH
4
1.00
1
O
52.53
19.310
21.349
4.901
A
O
HOH
61
HETATM
D
O
HOH
4
1.00
1
O
43.86
21.970
21.436
5.605
A
O
HOH
62
HETATM
D
O
HOH
4
1.00
1
O
68.65
24.363
16.220
9.070
A
O
HOH
63
HETATM
D
O
HOH
4
1.00
1
O
56.22
25.536
13.188
14.495
A
O
HOH
64
HETATM
D
O
HOH
4
1.00
1
O
37.59
10.731
3.054
9.213
A
O
HOH
65
HETATM
D
O
HOH
4
1.00
1
O
52.91
8.970
20.547
6.538
A
O
HOH
66
HETATM
D
O
HOH
4
1.00
1
O
50.68
11.574
23.694
6.024
A
O
HOH
67
HETATM
D
O
HOH
4
1.00
1
O
54.36
14.487
23.078
3.868
A
O
HOH
68
HETATM
D
O
HOH
4
1.00
1
O
17.94
19.740
8.816
9.944
A
O
HOH
69
HETATM
D
O
HOH
4
1.00
1
O
39.16
27.189
12.719
12.222
A
O
HOH
70
HETATM
D
O
HOH
4
1.00
1
O
33.12
20.761
18.748
11.370
A
O
HOH
71
HETATM
D
O
HOH
4
1.00
1
O
40.90
27.299
14.794
10.464
A
O
HOH
72
HETATM
D
O
HOH
4
1.00
1
O
40.33
0.484
15.452
7.703
A
O
HOH
73
HETATM
D
O
HOH
4
1.00
1
O
40.94
16.329
2.219
8.387
A
O
HOH
74
HETATM
D
O
HOH
4
1.00
1
O
31.71
15.697
22.693
6.183
A
O
HOH
75
HETATM
D
O
HOH
4
1.00
1
O
45.35
12.460
1.698
3.915
A
O
HOH
76
HETATM
D
O
HOH
4
1.00
1
O
0.035562
0.000000
0.000000
0.000000
0.035562
0.000000
0.000000
0.000000
0.018875
0.00000
0.00000
0.00000
Gao, Y.-G.
Liaw, Y.-C.
Li, Y.-K.
Van Der Marel, G.A.
Van Boom, J.H.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.120
28.120
52.980
C11 H17 N6 O6 P
360.263
n
N2-METHYL 2'-DEOXYADENOSINE 5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C33 H39 N O13
657.662
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
MAR70; DAUNOMYCIN DERIVATIVE
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Y
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
N
Y
8
N
N
Y
9
N
N
Y
10
N
N
N
11
N
N
N
12
N
P
N
13
N
O
N
14
N
O
N
15
N
O
N
16
N
C
N
17
R
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
S
C
N
22
N
O
N
23
N
O
N
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
O
N
43
N
P
N
44
N
O
N
45
N
O
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
O
N
50
S
C
N
51
N
O
N
52
N
C
N
53
R
C
N
54
N
N
N
55
N
C
N
56
N
O
N
57
N
N
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
C
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
O
N
77
N
P
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
O
N
84
S
C
N
85
N
O
N
86
N
C
N
87
R
C
Y
88
N
N
Y
89
N
C
Y
90
N
N
Y
91
N
C
N
92
N
C
N
93
N
O
N
94
N
N
N
95
N
C
N
96
N
N
N
97
N
N
Y
98
N
C
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
O
N
114
N
P
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
O
N
121
S
C
N
122
N
O
N
123
N
C
N
124
R
C
N
125
N
N
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
O
N
150
N
H
N
151
N
H
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
C
N
156
N
O
Y
157
N
C
N
158
N
C
N
159
N
O
Y
160
N
C
Y
161
N
C
N
162
N
O
Y
163
N
C
N
164
S
C
N
165
N
O
N
166
N
C
N
167
S
C
N
168
N
O
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
Y
173
N
C
Y
174
N
C
N
175
N
O
Y
176
N
C
N
177
N
C
N
178
N
O
Y
179
N
C
N
180
N
C
N
181
R
C
N
182
N
C
N
183
S
C
N
184
N
N
N
185
S
C
N
186
N
O
N
187
S
C
N
188
N
O
N
189
N
C
N
190
S
C
N
191
N
C
N
192
S
C
N
193
N
O
N
194
R
C
N
195
N
O
N
196
S
C
N
197
N
O
N
198
N
C
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
MG
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
Y
5
N
sing
Y
6
N
doub
Y
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
Y
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
doub
Y
158
N
sing
N
159
N
sing
Y
160
N
sing
N
161
N
sing
Y
162
N
doub
N
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
doub
N
169
N
doub
N
170
N
sing
Y
171
N
doub
Y
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
88
4845
4849
10.1073/pnas.88.11.4845
2052564
Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct.
1991
UK
Anti-Cancer Drug Des.
ACDDEA
0807
0266-9536
6
137
Influence of Aglycone Modifications on the Binding of Anthracycline Drugs to DNA: The Molecular Structure of Idarubicin and 4-O-Demethyl-11-Deoxydoxorubicin Complexed to d(CGATCG)
1991
10.2210/pdb1d35/pdb
pdb_00001d35
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ROOM TEMPERATURE
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
1838.258
DNA (5'-D(*CP*GP*TP*(A40)P*CP*G)-3')
1
syn
polymer
657.662
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
68
nat
water
no
yes
(DC)(DG)(DT)(A40)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.85
56.82
VAPOR DIFFUSION
6.00
pH 6.00, VAPOR DIFFUSION, temperature 295.00K
295.00
WATER
1
MPD
1
HCHO
1
BACL2
1
NA CACODYLATE
1
SPERMINE
1
WATER
2
MPD
2
5.746
1
19
A
1
A
6
-2.666
A_DC1:DG6_A
1
1.516
0.160
0.009
-0.184
-18.335
1
19
A
2
A
5
0.271
A_DG2:DC5_A
2
3.010
-0.110
-0.399
-0.082
-3.943
1
20
A
3
A
4
-3.209
A_DT3:A404_A
3
-4.287
-0.035
-0.033
-0.122
3.943
1
20
A
4
A
3
-3.209
A_A404:DT3_A
4
-4.287
0.035
-0.033
-0.122
18.335
1
19
A
5
A
2
0.271
A_DC5:DG2_A
5
3.010
0.110
-0.399
-0.082
-5.746
1
19
A
6
A
1
-2.666
A_DG6:DC1_A
6
1.516
-0.160
0.009
-0.184
7.043
35.585
A
A
1
2
-4.421
A
A
6
5
7.099
-2.698
1.102
1.196
AA_DC1DG2:DC5DG6_AA
1
2.046
-3.352
35.429
2.808
-1.158
3.178
29.568
A
A
2
3
-5.314
A
A
5
4
3.057
-2.702
-1.336
-0.031
AA_DG2DT3:A404DC5_AA
2
-3.391
6.667
29.255
0.489
1.928
3.064
35.954
A
A
3
4
15.004
A
A
4
3
3.236
9.166
0.000
-0.293
AA_DT3A404:DT3A404_AA
3
0.000
0.000
34.804
-1.755
0.000
3.178
29.568
A
A
4
5
-5.314
A
A
3
2
3.057
-2.702
1.336
-0.031
AA_A404DC5:DG2DT3_AA
4
3.391
-6.667
29.255
0.489
-1.928
7.043
35.585
A
A
5
6
-4.421
A
A
2
1
7.099
-2.698
-1.102
1.196
AA_DC5DG6:DC1DG2_AA
5
-2.046
3.352
35.429
2.808
1.158
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Structure summary
1
0
1992-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1991-04-23
REL
MAR
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
MG
MAGNESIUM ION
HOH
water
MAR
4
2
MAR
MAR
7
A
MG
8
3
MG
MG
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
+A
4
n
4
A40
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O6
MAR
1_555
75.5
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O4
MAR
1_555
124.5
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
MAR
7
B
O4
MAR
1_555
51.3
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
89.7
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
95.0
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
81.1
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
105.2
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
106.1
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
104.0
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
156.6
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
112.7
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
153.6
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
109.9
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
61.2
A
HOH
10
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
96.0
A
A40
4
A
A40
4
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.1200000000
28.1200000000
26.4900000000
1
A
A
OP2
O
DC
HOH
5
63
2.00
1
A
A
O
O
HOH
HOH
36
63
2.19
1
8.84
1.20
119.70
128.54
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
-5.77
0.80
102.40
96.63
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
4.45
0.30
108.30
112.75
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.72
0.50
111.50
115.22
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-4.22
0.60
127.20
122.98
A
A
A
C2
N3
C4
DT
DT
DT
3
3
3
N
1
-5.20
0.80
109.40
104.20
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
8.48
0.30
108.30
116.78
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-4.53
0.60
128.60
124.07
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
O
O
HOH
HOH
73
76
2.00
1_555
5_555
0.174
1.300
2599
1
2.000
TR
isotropic
TR
isotropic
TR
isotropic
1.300
68
238
50
120
0
fix
fix
fix
1.300
1D35
2599
2.000
1
refinement
NUCLSQ
FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.605
both
A
DT
3
A
O3'
DT
3
1_555
A
A40
4
A
P
A40
4
1_555
covale
1.604
one
A
A40
4
A
O3'
A40
4
1_555
A
DC
5
A
P
DC
5
1_555
covale
1.495
none
A
A40
4
A
CH2
A40
4
1_555
A
MAR
7
B
N3'
MAR
1_555
metalc
2.748
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
metalc
3.028
A
MAR
7
B
O6
MAR
1_555
A
MG
8
C
MG
MG
1_555
metalc
2.929
A
MAR
7
B
O4
MAR
1_555
A
MG
8
C
MG
MG
1_555
metalc
2.990
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
metalc
2.866
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
1_555
metalc
2.797
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
A40
4
A
N1
A40
4
8_665
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
A40
4
A
N6
A40
4
8_665
hydrog
WATSON-CRICK
A
A40
4
A
N1
A40
4
1_555
A
DT
3
A
N3
DT
3
8_665
hydrog
WATSON-CRICK
A
A40
4
A
N6
A40
4
1_555
A
DT
3
A
O4
DT
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
1D35
PDB
1
1D35
1
6
1D35
1
6
1D35
A
1
1
6
BINDING SITE FOR RESIDUE MAR A 7
A
MAR
7
Software
12
BINDING SITE FOR RESIDUE MG A 8
A
MG
8
Software
5
A
DC
1
A
DC
1
12
8_665
A
DG
2
A
DG
2
12
8_665
A
DT
3
A
DT
3
12
8_665
A
A40
4
A
A40
4
12
1_555
A
A40
4
A
A40
4
12
8_665
A
DC
5
A
DC
5
12
1_555
A
DG
6
A
DG
6
12
1_555
A
MG
8
C
MG
12
1_555
A
HOH
17
D
HOH
12
1_555
A
HOH
38
D
HOH
12
1_555
A
HOH
69
D
HOH
12
1_555
A
HOH
74
D
HOH
12
1_555
A
DG
6
A
DG
6
5
1_555
A
MAR
7
B
MAR
5
1_555
A
HOH
9
D
HOH
5
1_555
A
HOH
10
D
HOH
5
1_555
A
HOH
11
D
HOH
5
1_555
92
P 41 21 2