0.035549
0.000000
0.000000
0.000000
0.035549
0.000000
0.000000
0.000000
0.018629
0.00000
0.00000
0.00000
Gao, Y.-G.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.130
28.130
53.680
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C26 H27 N O9
497.494
IDARUBICIN
4-DEMETHOXY-DAUNORUBICIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
Y
112
N
C
N
113
N
C
N
114
N
O
Y
115
N
C
Y
116
N
C
N
117
N
O
Y
118
N
C
N
119
S
C
N
120
N
O
N
121
N
C
N
122
S
C
N
123
N
O
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
Y
128
N
C
Y
129
N
C
N
130
N
O
Y
131
N
C
N
132
N
C
N
133
N
O
Y
134
N
C
N
135
R
C
N
136
N
C
N
137
S
C
N
138
N
N
N
139
S
C
N
140
N
O
N
141
S
C
N
142
N
O
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
O
N
172
N
P
N
173
N
O
N
174
N
O
N
175
N
O
N
176
N
C
N
177
R
C
N
178
N
O
N
179
S
C
N
180
N
O
N
181
N
C
N
182
R
C
N
183
N
N
N
184
N
C
N
185
N
O
N
186
N
N
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
Y
123
N
doub
N
124
N
doub
N
125
N
sing
Y
126
N
doub
Y
127
N
sing
N
128
N
sing
Y
129
N
sing
N
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
UK
Anti-Cancer Drug Des.
ACDDEA
0807
0266-9536
6
137
149
1872945
Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the molecular structure of idarubicin and 4-O-demethyl-11-deoxydoxorubicin complexed to d(CGATCG).
1991
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
88
4845
4849
Facile Formation of Crosslinked Adduct between DNA and the Daunorubicin Derivative MAR70 Mediated by Formaldehyde: Molecular Structure of the MAR70-d(CGTnACG) Covalent Adduct
1991
10.2210/pdb1d38/pdb
pdb_00001d38
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
1809.217
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
1
syn
polymer
497.494
IDARUBICIN
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
60
nat
water
no
no
(DC)(DG)(DA)(DT)(DC)(DG)
CGATCG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.93
58.09
VAPOR DIFFUSION
6.00
pH 6.00, VAPOR DIFFUSION, temperature 298.00K
298.00
WATER
1
MPD
1
BACL2
1
NA CACODYLATE
1
SPERMINE
1
WATER
2
MPD
2
13.601
1
19
A
1
A
6
0.089
A_DC1:DG6_A
1
4.354
0.228
-0.296
-0.263
-16.501
1
19
A
2
A
5
0.013
A_DG2:DC5_A
2
0.809
-0.110
-0.314
-0.161
-7.360
1
20
A
3
A
4
1.049
A_DA3:DT4_A
3
-2.238
-0.113
0.325
-0.221
7.360
1
20
A
4
A
3
1.049
A_DT4:DA3_A
4
-2.238
0.113
0.325
-0.221
16.501
1
19
A
5
A
2
0.013
A_DC5:DG2_A
5
0.809
0.110
-0.314
-0.161
-13.601
1
19
A
6
A
1
0.089
A_DG6:DC1_A
6
4.354
-0.228
-0.296
-0.263
7.181
33.942
A
A
1
2
-1.249
A
A
6
5
7.206
-0.729
1.309
1.085
AA_DC1DG2:DC5DG6_AA
1
-0.018
0.030
33.934
2.116
-2.248
3.475
32.489
A
A
2
3
-0.510
A
A
5
4
3.258
-0.283
-1.382
0.436
AA_DG2DA3:DT4DC5_AA
2
-7.123
12.831
31.718
0.832
1.170
3.146
31.976
A
A
3
4
1.385
A
A
4
3
3.164
0.763
0.000
-0.748
AA_DA3DT4:DA3DT4_AA
3
0.000
0.000
31.967
-1.492
0.000
3.475
32.489
A
A
4
5
-0.510
A
A
3
2
3.258
-0.283
1.382
0.436
AA_DT4DC5:DG2DA3_AA
4
7.123
-12.831
31.718
0.832
-1.170
7.181
33.942
A
A
5
6
-1.249
A
A
2
1
7.206
-0.729
-1.309
1.085
AA_DC5DG6:DC1DG2_AA
5
0.018
-0.030
33.934
2.116
2.248
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1992-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1991-04-23
REL
DM5
IDARUBICIN
MG
MAGNESIUM ION
HOH
water
DM5
7
2
DM5
DM5
7
A
MG
8
3
MG
MG
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
98.8
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
7_555
134.8
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
7_555
104.2
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
142.2
A
HOH
9
D
O
HOH
1_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
99.2
A
HOH
10
D
O
HOH
7_555
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
71.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.1300000000
28.1300000000
26.8400000000
1
A
A
O
O
HOH
HOH
31
62
1.57
1
3.60
0.50
119.90
123.50
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
5.19
0.70
121.90
127.09
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
1
7.94
1.20
119.70
127.64
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
9.67
1.10
110.50
120.17
A
A
A
O3'
P
OP2
DC
DG
DG
1
2
2
Y
1
9.32
1.20
110.70
120.02
A
A
A
O5'
P
OP1
DG
DG
DG
2
2
2
N
1
-8.99
0.90
105.70
96.71
A
A
A
O5'
P
OP2
DG
DG
DG
2
2
2
N
1
-7.11
0.80
109.40
102.29
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-13.62
1.60
120.90
107.28
A
A
A
P
O5'
C5'
DG
DG
DG
2
2
2
N
1
-6.82
0.80
102.40
95.58
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
5.64
0.30
108.30
113.94
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.56
0.60
125.10
120.54
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
3.48
0.50
111.50
114.98
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-3.82
0.60
119.90
116.08
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
10.84
1.50
119.60
130.44
A
A
A
OP1
P
OP2
DA
DA
DA
3
3
3
N
1
-8.28
0.80
109.40
101.12
A
A
A
O5'
C5'
C4'
DA
DA
DA
3
3
3
N
1
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
4.33
0.60
118.60
122.93
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
1
-3.79
0.50
129.30
125.51
A
A
A
N1
C2
N3
DA
DA
DA
3
3
3
N
1
-4.08
0.50
117.70
113.62
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
1
4.18
0.60
114.60
118.78
A
A
A
N1
C2
N3
DT
DT
DT
4
4
4
N
1
-4.11
0.60
127.20
123.09
A
A
A
C2
N3
C4
DT
DT
DT
4
4
4
N
1
7.70
1.20
119.70
127.40
A
A
A
C3'
O3'
P
DT
DT
DC
4
4
5
Y
1
-5.41
0.80
109.40
103.99
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
-5.63
0.80
102.40
96.77
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
7.76
0.30
108.30
116.06
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-6.37
0.70
108.00
101.63
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-3.72
0.60
128.60
124.88
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
P
O5'
DG
DG
2
2
0.065
0.010
1.593
1.658
N
1
A
A
P
O5'
DT
DT
4
4
0.066
0.010
1.593
1.659
N
1
A
A
O4'
C4'
DT
DT
4
4
-0.061
0.010
1.446
1.385
N
1
A
A
C6
N1
DG
DG
6
6
-0.044
0.007
1.391
1.347
N
1
A
A
O
O
HOH
HOH
48
67
2.17
1_555
7_555
0.1880000
1.700
1724
1
2.000
TR
isotropic
TR
isotropic
1.700
60
217
37
120
0
fix
fix
1.700
1D38
1724
2.000
1
refinement
NUCLSQ
INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF IDARUBICIN AND 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO D(CGATCG)
1
N
N
2
N
N
3
N
N
4
N
N
metalc
2.625
A
DG
6
A
N7
DG
6
1_555
A
MG
8
C
MG
MG
1_555
metalc
2.787
A
MG
8
C
MG
MG
1_555
A
HOH
9
D
O
HOH
1_555
metalc
2.845
A
MG
8
C
MG
MG
1_555
A
HOH
10
D
O
HOH
7_555
metalc
2.788
A
MG
8
C
MG
MG
1_555
A
HOH
11
D
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
4
A
N3
DT
4
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
4
A
O4
DT
4
8_665
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
3
A
N1
DA
3
8_665
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
3
A
N6
DA
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D38
PDB
1
1D38
1
6
1D38
1
6
1D38
A
1
1
6
BINDING SITE FOR RESIDUE DM5 A 7
A
DM5
7
Software
10
BINDING SITE FOR RESIDUE MG A 8
A
MG
8
Software
5
A
DC
1
A
DC
1
10
8_665
A
DG
2
A
DG
2
10
8_665
A
DA
3
A
DA
3
10
8_665
A
DT
4
A
DT
4
10
1_555
A
DC
5
A
DC
5
10
1_555
A
DG
6
A
DG
6
10
1_555
A
MG
8
C
MG
10
1_555
A
HOH
29
D
HOH
10
1_555
A
HOH
33
D
HOH
10
1_555
A
HOH
64
D
HOH
10
1_555
A
DG
6
A
DG
6
5
1_555
A
DM5
7
B
DM5
5
1_555
A
HOH
9
D
HOH
5
1_555
A
HOH
10
D
HOH
5
7_555
A
HOH
11
D
HOH
5
1_555
92
P 41 21 2