0.055525 0.000000 0.000000 0.000000 0.032227 0.000000 0.000000 0.000000 0.022321 0.00000 0.00000 0.00000 Kagawa, T.F. Geierstanger, B.H. Wang, A.H.-J. Ho, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 18.010 31.030 44.800 Cu 2 63.546 COPPER (II) ION non-polymer C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer N 1 N CU N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 N C N 47 R C Y 48 N N Y 49 N C Y 50 N N Y 51 N C N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N N Y 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N H N 75 N H N 76 N NA N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 266 20175 20184 1939078 Covalent modification of guanine bases in double-stranded DNA. The 1.2-A Z-DNA structure of d(CGCGCG) in the presence of CuCl2. 1991 UK Nature NATUAS 0006 0028-0836 282 680 686 Molecular Structure of a Left-Handed Double Helical DNA Fragment at Atomic Resolution 1979 10.2210/pdb1d39/pdb pdb_00001d39 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER SYNTEX P2 x-ray 1 1.0 1810.205 DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3') 2 syn polymer 63.546 COPPER (II) ION 6 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 66 nat water no no (DC)(DG)(DC)(DG)(DC)(DG) CGCGCG A,B polydeoxyribonucleotide n n n n n n 1.73 28.85 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION WATER 1 NA CACODYLATE 1 MGCL2 1 WATER 2 ISOPROPANOL 2 WATER 3 CUCL2 3 3.514 1 19 A 1 B 12 -0.368 A_DC1:DG12_B 1 1.823 -0.179 0.030 -0.053 -6.710 1 19 A 2 B 11 0.968 A_DG2:DC11_B 2 -2.026 0.277 0.031 -0.105 4.502 1 19 A 3 B 10 -1.455 A_DC3:DG10_B 3 -1.402 -0.373 0.102 -0.168 -5.886 1 19 A 4 B 9 0.788 A_DG4:DC9_B 4 0.179 0.093 0.135 -0.206 3.960 1 19 A 5 B 8 1.643 A_DC5:DG8_B 5 -0.435 -0.176 0.161 -0.223 -2.240 1 19 A 6 B 7 0.591 A_DG6:DC7_B 6 0.474 0.272 0.058 -0.093 4.390 -9.101 A A 1 2 7.290 B B 12 11 3.765 -1.150 0.119 5.351 AA_DC1DG2:DC11DG12_BB 1 -1.265 -8.017 -8.939 -30.453 -2.847 3.071 -50.023 A A 2 3 7.123 B B 11 10 3.206 -6.010 -0.237 -1.034 AA_DG2DC3:DG10DC11_BB 2 0.321 0.380 -49.683 1.641 -0.258 4.983 -8.971 A A 3 4 13.508 B B 10 9 3.822 -2.092 0.184 5.427 AA_DC3DG4:DC9DG10_BB 3 -0.623 -4.021 -8.702 -28.045 -0.806 3.254 -52.442 A A 4 5 2.403 B B 9 8 3.291 -2.122 -0.013 -0.925 AA_DG4DC5:DG8DC9_BB 4 1.289 1.459 -52.387 1.186 0.069 4.689 -9.575 A A 5 6 12.060 B B 8 7 3.644 -1.998 0.070 5.443 AA_DC5DG6:DC7DG8_BB 5 0.463 2.795 -9.354 -27.351 1.636 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-05-07 REL REL CU COPPER (II) ION NA SODIUM ION HOH water 2DCG ZDF001 PDB experimental model G 2 2 CU CU 7 A G 4 2 CU CU 8 A G 6 2 CU CU 9 A G 8 2 CU CU 13 B G 10 2 CU CU 14 B G 12 2 CU CU 15 B NA 13 3 NA NA 16 B HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 30 4 HOH HOH 30 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 49 4 HOH HOH 49 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 54 4 HOH HOH 54 A HOH 57 4 HOH HOH 57 A HOH 58 4 HOH HOH 58 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 67 4 HOH HOH 67 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 74 4 HOH HOH 74 A HOH 75 4 HOH HOH 75 A HOH 22 4 HOH HOH 22 B HOH 23 4 HOH HOH 23 B HOH 24 4 HOH HOH 24 B HOH 25 4 HOH HOH 25 B HOH 26 4 HOH HOH 26 B HOH 27 4 HOH HOH 27 B HOH 28 4 HOH HOH 28 B HOH 29 4 HOH HOH 29 B HOH 31 4 HOH HOH 31 B HOH 34 4 HOH HOH 34 B HOH 37 4 HOH HOH 37 B HOH 38 4 HOH HOH 38 B HOH 44 4 HOH HOH 44 B HOH 52 4 HOH HOH 52 B HOH 53 4 HOH HOH 53 B HOH 55 4 HOH HOH 55 B HOH 56 4 HOH HOH 56 B HOH 59 4 HOH HOH 59 B HOH 60 4 HOH HOH 60 B HOH 63 4 HOH HOH 63 B HOH 66 4 HOH HOH 66 B HOH 68 4 HOH HOH 68 B HOH 69 4 HOH HOH 69 B HOH 73 4 HOH HOH 73 B HOH 76 4 HOH HOH 76 B HOH 77 4 HOH HOH 77 B HOH 78 4 HOH HOH 78 B HOH 79 4 HOH HOH 79 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B G 8 n 2 DG 8 B C 9 n 3 DC 9 B G 10 n 4 DG 10 B C 11 n 5 DC 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric A DG 2 A N7 DG 2 1_555 A CU 7 C CU CU 1_555 A HOH 14 J O HOH 1_555 107.5 A DG 2 A N7 DG 2 1_555 A CU 7 C CU CU 1_555 A HOH 15 J O HOH 1_555 94.3 A HOH 14 J O HOH 1_555 A CU 7 C CU CU 1_555 A HOH 15 J O HOH 1_555 95.2 A DG 4 A N7 DG 4 1_555 A CU 8 D CU CU 1_555 A HOH 16 J O HOH 1_555 163.9 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 A HOH 17 J O HOH 1_555 98.1 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 A HOH 18 J O HOH 1_555 87.3 A HOH 17 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 18 J O HOH 1_555 174.4 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 A HOH 19 J O HOH 1_555 98.5 A HOH 17 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 19 J O HOH 1_555 91.2 A HOH 18 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 19 J O HOH 1_555 86.3 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 A HOH 20 J O HOH 1_555 87.4 A HOH 17 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 20 J O HOH 1_555 92.5 A HOH 18 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 20 J O HOH 1_555 89.5 A HOH 19 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 20 J O HOH 1_555 172.6 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 174.5 A HOH 17 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 84.5 A HOH 18 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 90.3 A HOH 19 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 86.3 A HOH 20 J O HOH 1_555 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 87.7 B DG 8 B N7 DG 2 1_555 B CU 13 F CU CU 1_555 B HOH 22 K O HOH 1_555 108.0 B DG 8 B N7 DG 2 1_555 B CU 13 F CU CU 1_555 B HOH 23 K O HOH 1_555 75.7 B HOH 22 K O HOH 1_555 B CU 13 F CU CU 1_555 B HOH 23 K O HOH 1_555 138.4 B DG 8 B N7 DG 2 1_555 B CU 13 F CU CU 1_555 B HOH 24 K O HOH 1_555 100.4 B HOH 22 K O HOH 1_555 B CU 13 F CU CU 1_555 B HOH 24 K O HOH 1_555 101.1 B HOH 23 K O HOH 1_555 B CU 13 F CU CU 1_555 B HOH 24 K O HOH 1_555 119.3 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 B CU 15 H CU CU 4_566 134.2 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 B CU 15 H CU CU 1_555 42.3 B CU 15 H CU CU 4_566 B CU 14 G CU CU 1_555 B CU 15 H CU CU 1_555 136.2 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 B HOH 77 K O HOH 1_555 86.2 B CU 15 H CU CU 4_566 B CU 14 G CU CU 1_555 B HOH 77 K O HOH 1_555 91.1 B CU 15 H CU CU 1_555 B CU 14 G CU CU 1_555 B HOH 77 K O HOH 1_555 49.9 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 B HOH 78 K O HOH 1_555 91.0 B CU 15 H CU CU 4_566 B CU 14 G CU CU 1_555 B HOH 78 K O HOH 1_555 134.8 B CU 15 H CU CU 1_555 B CU 14 G CU CU 1_555 B HOH 78 K O HOH 1_555 72.0 B HOH 77 K O HOH 1_555 B CU 14 G CU CU 1_555 B HOH 78 K O HOH 1_555 89.0 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 135.0 B CU 15 H CU CU 4_566 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 1.4 B CU 15 H CU CU 1_555 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 135.5 B HOH 77 K O HOH 1_555 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 90.0 B HOH 78 K O HOH 1_555 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 133.9 B DG 12 B N7 DG 6 1_555 B CU 15 H CU CU 1_555 B HOH 27 K O HOH 1_555 141.5 B DG 12 B N7 DG 6 1_555 B CU 15 H CU CU 1_555 B HOH 76 K O HOH 4_466 141.0 B HOH 27 K O HOH 1_555 B CU 15 H CU CU 1_555 B HOH 76 K O HOH 4_466 28.9 B DG 12 B N7 DG 6 1_555 B CU 15 H CU CU 1_555 B HOH 77 K O HOH 4_466 93.8 B HOH 27 K O HOH 1_555 B CU 15 H CU CU 1_555 B HOH 77 K O HOH 4_466 48.0 B HOH 76 K O HOH 4_466 B CU 15 H CU CU 1_555 B HOH 77 K O HOH 4_466 57.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B CU O CU HOH 14 76 0.69 1 B B O O HOH HOH 76 78 1.32 1 4.63 0.30 108.30 112.93 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 5.36 0.40 120.30 125.66 A A A C6 N1 C2 DC DC DC 1 1 1 N 1 -7.69 0.70 119.20 111.51 A A A N1 C2 N3 DC DC DC 1 1 1 N 1 8.08 0.50 119.90 127.98 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -5.77 0.40 121.90 116.13 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 7.62 0.60 118.90 126.52 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -12.19 0.80 109.40 97.21 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -3.91 0.40 104.50 100.59 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 -3.06 0.50 113.10 110.04 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 3.55 0.40 106.40 109.95 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 -2.80 0.40 105.40 102.60 A A A N9 C4 C5 DG DG DG 2 2 2 N 1 9.00 1.20 119.70 128.70 A A A C3' O3' P DG DG DC 2 2 3 Y 1 -10.87 0.90 105.70 94.83 A A A O5' P OP1 DC DC DC 3 3 3 N 1 -6.45 0.80 102.40 95.95 A A A C3' C2' C1' DC DC DC 3 3 3 N 1 -5.63 0.70 108.00 102.37 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -5.76 0.70 119.20 113.44 A A A N1 C2 N3 DC DC DC 3 3 3 N 1 6.45 0.50 119.90 126.35 A A A C2 N3 C4 DC DC DC 3 3 3 N 1 -5.36 0.40 121.90 116.54 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 4.39 0.50 117.40 121.79 A A A C4 C5 C6 DC DC DC 3 3 3 N 1 3.80 0.60 118.90 122.70 A A A N1 C2 O2 DC DC DC 3 3 3 N 1 -7.45 0.80 109.40 101.95 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 4.78 0.70 110.30 115.08 A A A C1' O4' C4' DG DG DG 4 4 4 N 1 -3.67 0.60 125.10 121.43 A A A C6 N1 C2 DG DG DG 4 4 4 N 1 4.61 0.60 123.90 128.51 A A A N1 C2 N3 DG DG DG 4 4 4 N 1 7.45 0.90 116.20 123.65 A A A N1 C2 N2 DG DG DG 4 4 4 N 1 -12.10 0.70 119.90 107.80 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 7.02 0.90 103.10 110.12 A A A C4' C3' C2' DC DC DC 5 5 5 N 1 4.28 0.50 119.90 124.18 A A A C2 N3 C4 DC DC DC 5 5 5 N 1 -3.95 0.40 121.90 117.95 A A A N3 C4 C5 DC DC DC 5 5 5 N 1 9.79 1.20 119.70 129.49 A A A C3' O3' P DC DC DG 5 5 6 Y 1 -6.06 0.90 105.70 99.64 A A A O5' P OP1 DG DG DG 6 6 6 N 1 -5.98 0.60 125.10 119.12 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 5.54 0.50 111.90 117.44 A A A C2 N3 C4 DG DG DG 6 6 6 N 1 -7.63 0.50 128.60 120.97 A A A N3 C4 C5 DG DG DG 6 6 6 N 1 4.57 0.50 111.50 116.07 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 4.59 0.50 104.30 108.89 A A A C5 N7 C8 DG DG DG 6 6 6 N 1 -6.01 0.50 113.10 107.09 A A A N7 C8 N9 DG DG DG 6 6 6 N 1 4.44 0.40 106.40 110.84 A A A C8 N9 C4 DG DG DG 6 6 6 N 1 8.30 0.60 126.00 134.30 A A A N3 C4 N9 DG DG DG 6 6 6 N 1 5.40 0.90 116.20 121.60 A A A N1 C2 N2 DG DG DG 6 6 6 N 1 -7.80 0.70 119.90 112.10 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -5.86 0.80 109.40 103.54 B B B O5' C5' C4' DC DC DC 7 7 7 N 1 -8.46 0.40 104.50 96.04 B B B O4' C4' C3' DC DC DC 7 7 7 N 1 11.39 1.20 115.70 127.09 B B B C5' C4' C3' DC DC DC 7 7 7 N 1 5.84 0.70 110.30 116.14 B B B C1' O4' C4' DC DC DC 7 7 7 N 1 7.56 0.90 103.10 110.66 B B B C4' C3' C2' DC DC DC 7 7 7 N 1 -8.63 0.80 102.40 93.77 B B B C3' C2' C1' DC DC DC 7 7 7 N 1 2.09 0.30 108.30 110.39 B B B O4' C1' N1 DC DC DC 7 7 7 N 1 5.15 0.50 119.90 125.05 B B B C2 N3 C4 DC DC DC 7 7 7 N 1 -3.65 0.40 121.90 118.25 B B B N3 C4 C5 DC DC DC 7 7 7 N 1 4.65 0.50 121.00 125.65 B B B C5 C6 N1 DC DC DC 7 7 7 N 1 4.84 0.60 118.90 123.74 B B B N1 C2 O2 DC DC DC 7 7 7 N 1 9.68 1.50 119.60 129.28 B B B OP1 P OP2 DG DG DG 8 8 8 N 1 -6.06 0.90 105.70 99.64 B B B O5' P OP1 DG DG DG 8 8 8 N 1 -8.96 0.80 109.40 100.44 B B B O5' C5' C4' DG DG DG 8 8 8 N 1 -10.77 1.60 120.90 110.13 B B B P O5' C5' DG DG DG 8 8 8 N 1 6.37 0.70 110.30 116.67 B B B C1' O4' C4' DG DG DG 8 8 8 N 1 -10.59 0.60 125.10 114.51 B B B C6 N1 C2 DG DG DG 8 8 8 N 1 8.44 0.60 123.90 132.34 B B B N1 C2 N3 DG DG DG 8 8 8 N 1 7.02 0.50 111.50 118.52 B B B C5 C6 N1 DG DG DG 8 8 8 N 1 4.02 0.60 126.00 130.02 B B B N3 C4 N9 DG DG DG 8 8 8 N 1 -9.28 0.70 119.90 110.62 B B B N3 C2 N2 DG DG DG 8 8 8 N 1 -5.31 0.60 128.60 123.29 B B B C5 C6 O6 DG DG DG 8 8 8 N 1 -3.65 0.40 104.50 100.85 B B B O4' C4' C3' DC DC DC 9 9 9 N 1 7.66 0.70 110.30 117.96 B B B C1' O4' C4' DC DC DC 9 9 9 N 1 -6.77 0.80 105.90 99.13 B B B O4' C1' C2' DC DC DC 9 9 9 N 1 5.31 0.30 108.30 113.61 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 -4.40 0.70 119.20 114.80 B B B N1 C2 N3 DC DC DC 9 9 9 N 1 8.24 0.50 119.90 128.14 B B B C2 N3 C4 DC DC DC 9 9 9 N 1 -6.82 0.40 121.90 115.08 B B B N3 C4 C5 DC DC DC 9 9 9 N 1 4.28 0.70 121.90 126.18 B B B N3 C2 O2 DC DC DC 9 9 9 N 1 6.72 0.70 118.00 124.72 B B B N3 C4 N4 DC DC DC 9 9 9 N 1 -6.24 0.90 105.70 99.46 B B B O5' P OP1 DG DG DG 10 10 10 N 1 7.49 1.20 110.70 118.19 B B B O5' P OP2 DG DG DG 10 10 10 N 1 -6.31 0.40 104.50 98.19 B B B O4' C4' C3' DG DG DG 10 10 10 N 1 5.80 0.90 103.10 108.90 B B B C4' C3' C2' DG DG DG 10 10 10 N 1 4.37 0.50 106.80 111.17 B B B O4' C1' C2' DG DG DG 10 10 10 N 1 -6.62 0.70 108.00 101.38 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 -8.86 0.60 125.10 116.24 B B B C6 N1 C2 DG DG DG 10 10 10 N 1 8.32 0.60 123.90 132.22 B B B N1 C2 N3 DG DG DG 10 10 10 N 1 -5.63 0.50 111.90 106.27 B B B C2 N3 C4 DG DG DG 10 10 10 N 1 5.38 0.50 111.50 116.88 B B B C5 C6 N1 DG DG DG 10 10 10 N 1 2.44 0.40 110.80 113.24 B B B C4 C5 N7 DG DG DG 10 10 10 N 1 -3.56 0.50 104.30 100.74 B B B C5 N7 C8 DG DG DG 10 10 10 N 1 -13.16 0.70 119.90 106.74 B B B N3 C2 N2 DG DG DG 10 10 10 N 1 -5.07 0.60 128.60 123.53 B B B C5 C6 O6 DG DG DG 10 10 10 N 1 7.88 1.30 126.50 134.38 B B B C4 N9 C1' DG DG DG 10 10 10 N 1 13.00 1.20 119.70 132.70 B B B C3' O3' P DG DG DC 10 10 11 Y 1 22.60 1.90 104.00 126.60 B B B O3' P O5' DG DC DC 10 11 11 Y 1 -7.18 0.90 105.70 98.52 B B B O5' P OP1 DC DC DC 11 11 11 N 1 -9.79 0.80 109.40 99.61 B B B O5' C5' C4' DC DC DC 11 11 11 N 1 -5.59 0.40 104.50 98.91 B B B O4' C4' C3' DC DC DC 11 11 11 N 1 7.81 1.10 109.80 117.61 B B B C5' C4' O4' DC DC DC 11 11 11 N 1 6.63 0.70 110.30 116.93 B B B C1' O4' C4' DC DC DC 11 11 11 N 1 5.68 0.90 103.10 108.78 B B B C4' C3' C2' DC DC DC 11 11 11 N 1 -5.00 0.80 102.40 97.40 B B B C3' C2' C1' DC DC DC 11 11 11 N 1 -2.93 0.40 120.30 117.37 B B B C6 N1 C2 DC DC DC 11 11 11 N 1 -2.71 0.40 121.90 119.19 B B B N3 C4 C5 DC DC DC 11 11 11 N 1 3.47 0.50 117.40 120.87 B B B C4 C5 C6 DC DC DC 11 11 11 N 1 -4.66 0.70 121.90 117.24 B B B N3 C2 O2 DC DC DC 11 11 11 N 1 4.43 0.70 120.20 124.63 B B B C5 C4 N4 DC DC DC 11 11 11 N 1 -5.94 0.90 105.70 99.76 B B B O5' P OP1 DG DG DG 12 12 12 N 1 -11.51 1.60 120.90 109.39 B B B P O5' C5' DG DG DG 12 12 12 N 1 -7.50 1.00 110.10 102.60 B B B C1' O4' C4' DG DG DG 12 12 12 N 1 -7.39 0.70 108.00 100.61 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 -8.04 0.60 125.10 117.06 B B B C6 N1 C2 DG DG DG 12 12 12 N 1 3.02 0.50 111.90 114.92 B B B C2 N3 C4 DG DG DG 12 12 12 N 1 -4.40 0.50 128.60 124.20 B B B N3 C4 C5 DG DG DG 12 12 12 N 1 6.15 0.50 111.50 117.65 B B B C5 C6 N1 DG DG DG 12 12 12 N 1 -4.47 0.50 113.10 108.63 B B B N7 C8 N9 DG DG DG 12 12 12 N 1 3.83 0.40 106.40 110.23 B B B C8 N9 C4 DG DG DG 12 12 12 N 1 5.85 0.60 126.00 131.85 B B B N3 C4 N9 DG DG DG 12 12 12 N 1 -6.05 0.70 119.90 113.85 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 -6.87 0.60 119.90 113.03 B B B N1 C6 O6 DG DG DG 12 12 12 N 1 A A C2' C1' DC DC 1 1 0.066 0.010 1.519 1.585 N 1 A A N3 C4 DC DC 1 1 0.069 0.007 1.335 1.404 N 1 A A C4' C3' DG DG 2 2 0.087 0.010 1.529 1.616 N 1 A A C3' C2' DG DG 2 2 -0.061 0.008 1.516 1.455 N 1 A A C1' N9 DG DG 2 2 -0.088 0.014 1.468 1.380 N 1 A A N1 C2 DG DG 2 2 -0.082 0.008 1.373 1.291 N 1 A A C2 N3 DG DG 2 2 0.055 0.008 1.323 1.378 N 1 A A C4 C5 DG DG 2 2 -0.051 0.007 1.379 1.328 N 1 A A N7 C8 DG DG 2 2 0.036 0.006 1.305 1.341 N 1 A A C8 N9 DG DG 2 2 -0.068 0.007 1.374 1.306 N 1 A A N9 C4 DG DG 2 2 0.050 0.008 1.375 1.425 N 1 A A C2 N2 DG DG 2 2 -0.087 0.010 1.341 1.254 N 1 A A P O5' DC DC 3 3 0.074 0.010 1.593 1.667 N 1 A A C5' C4' DC DC 3 3 0.050 0.007 1.512 1.562 N 1 A A O3' C3' DC DC 3 3 -0.043 0.006 1.419 1.376 N 1 A A C4 C5 DC DC 3 3 -0.065 0.008 1.425 1.360 N 1 A A N1 C2 DG DG 4 4 -0.058 0.008 1.373 1.315 N 1 A A C2 N2 DG DG 4 4 -0.087 0.010 1.341 1.254 N 1 A A O4' C1' DC DC 5 5 0.075 0.011 1.420 1.495 N 1 A A N1 C6 DC DC 5 5 0.060 0.006 1.367 1.427 N 1 A A C2' C1' DG DG 6 6 0.101 0.010 1.519 1.620 N 1 A A C6 N1 DG DG 6 6 -0.042 0.007 1.391 1.349 N 1 A A C2 N2 DG DG 6 6 -0.080 0.010 1.341 1.261 N 1 B B C5' C4' DC DC 7 7 0.048 0.007 1.512 1.560 N 1 B B N1 C6 DC DC 7 7 0.057 0.006 1.367 1.424 N 1 B B N3 C4 DC DC 7 7 0.070 0.007 1.335 1.405 N 1 B B C4' C3' DG DG 8 8 0.118 0.010 1.529 1.647 N 1 B B C3' C2' DG DG 8 8 -0.052 0.008 1.516 1.464 N 1 B B C2' C1' DG DG 8 8 0.085 0.010 1.519 1.604 N 1 B B O3' C3' DC DC 9 9 -0.043 0.006 1.419 1.376 N 1 B B C2 N3 DG DG 10 10 0.069 0.008 1.323 1.392 N 1 B B C2 N2 DG DG 10 10 -0.095 0.010 1.341 1.246 N 1 B B N1 C6 DC DC 11 11 0.037 0.006 1.367 1.404 N 1 B B N3 C4 DC DC 11 11 0.045 0.007 1.335 1.380 N 1 B B C3' C2' DG DG 12 12 -0.135 0.008 1.516 1.381 N 1 B B C2' C1' DG DG 12 12 0.076 0.010 1.519 1.595 N 1 B B N7 C8 DG DG 12 12 0.050 0.006 1.305 1.355 N 1 B B C8 N9 DG DG 12 12 -0.049 0.007 1.374 1.325 N 1 B B C2 N2 DG DG 12 12 -0.098 0.010 1.341 1.243 N 1 B B CU O CU HOH 15 79 0.29 1_555 4_466 1 B B CU O CU HOH 14 27 0.59 1_555 4_566 1 B B O O HOH HOH 27 76 1.00 1_555 4_466 1 B B N7 O DG HOH 10 27 1.83 1_555 4_566 1 B B O O HOH HOH 27 77 2.04 1_555 4_466 1 B B O O HOH HOH 27 78 2.07 1_555 4_466 1 B B N7 O DG HOH 12 79 2.13 1_555 4_466 0.1980000 1.200 4107 1 ZDF001 TR isotropic TR isotropic TR isotropic 1.200 66 313 7 240 0 fix fix fix 1.200 1D39 4107 2.000 1 refinement NUCLSQ COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N metalc 2.569 A DG 2 A N7 DG 2 1_555 A CU 7 C CU CU 1_555 metalc 2.339 A DG 4 A N7 DG 4 1_555 A CU 8 D CU CU 1_555 metalc 2.174 A DG 6 A N7 DG 6 1_555 A CU 9 E CU CU 1_555 metalc 2.152 A CU 7 C CU CU 1_555 A HOH 14 J O HOH 1_555 metalc 2.142 A CU 7 C CU CU 1_555 A HOH 15 J O HOH 1_555 metalc 2.225 A CU 8 D CU CU 1_555 A HOH 16 J O HOH 1_555 metalc 2.133 A CU 9 E CU CU 1_555 A HOH 17 J O HOH 1_555 metalc 2.172 A CU 9 E CU CU 1_555 A HOH 18 J O HOH 1_555 metalc 2.350 A CU 9 E CU CU 1_555 A HOH 19 J O HOH 1_555 metalc 2.160 A CU 9 E CU CU 1_555 A HOH 20 J O HOH 1_555 metalc 2.220 A CU 9 E CU CU 1_555 A HOH 21 J O HOH 1_555 metalc 2.310 B DG 8 B N7 DG 2 1_555 B CU 13 F CU CU 1_555 metalc 2.360 B DG 10 B N7 DG 4 1_555 B CU 14 G CU CU 1_555 metalc 2.383 B DG 12 B N7 DG 6 1_555 B CU 15 H CU CU 1_555 metalc 2.143 B CU 13 F CU CU 1_555 B HOH 22 K O HOH 1_555 metalc 1.994 B CU 13 F CU CU 1_555 B HOH 23 K O HOH 1_555 metalc 2.128 B CU 13 F CU CU 1_555 B HOH 24 K O HOH 1_555 metalc 1.551 B CU 14 G CU CU 1_555 B CU 15 H CU CU 4_566 metalc 1.551 B CU 14 G CU CU 4_466 B CU 15 H CU CU 1_555 metalc 2.228 B CU 14 G CU CU 1_555 B HOH 77 K O HOH 1_555 metalc 1.991 B CU 14 G CU CU 1_555 B HOH 78 K O HOH 1_555 metalc 1.834 B CU 14 G CU CU 1_555 B HOH 79 K O HOH 1_555 metalc 1.986 B CU 15 H CU CU 1_555 B HOH 27 K O HOH 1_555 metalc 2.018 B CU 15 H CU CU 1_555 B HOH 76 K O HOH 4_466 metalc 2.740 B CU 15 H CU CU 1_555 B HOH 77 K O HOH 4_466 metalc 2.551 B NA 16 I NA NA 1_555 B HOH 26 K O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 9 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 9 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 9 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 DNA Z-DNA, DOUBLE HELIX, MODIFIED, DNA 1D39 PDB 1 1D39 1 6 1D39 1 6 1D39 A 1 1 6 7 12 1D39 7 12 1D39 B 1 1 6 BINDING SITE FOR RESIDUE CU A 7 A CU 7 Software 4 BINDING SITE FOR RESIDUE CU A 8 A CU 8 Software 2 BINDING SITE FOR RESIDUE CU A 9 A CU 9 Software 6 BINDING SITE FOR RESIDUE CU B 13 B CU 13 Software 5 BINDING SITE FOR RESIDUE CU B 14 B CU 14 Software 6 BINDING SITE FOR RESIDUE CU B 15 B CU 15 Software 8 BINDING SITE FOR RESIDUE NA B 16 B NA 16 Software 3 A DG 2 A DG 2 4 1_555 A HOH 14 J HOH 4 1_555 A HOH 15 J HOH 4 1_555 B DC 11 B DC 5 4 1_655 A DG 4 A DG 4 2 1_555 A HOH 16 J HOH 2 1_555 A DG 6 A DG 6 6 1_555 A HOH 17 J HOH 6 1_555 A HOH 18 J HOH 6 1_555 A HOH 19 J HOH 6 1_555 A HOH 20 J HOH 6 1_555 A HOH 21 J HOH 6 1_555 B DG 8 B DG 2 5 1_555 B HOH 22 K HOH 5 1_555 B HOH 23 K HOH 5 1_555 B HOH 24 K HOH 5 1_555 B HOH 25 K HOH 5 1_555 B DG 10 B DG 4 6 1_555 B CU 15 H CU 6 4_566 B HOH 73 K HOH 6 4_566 B HOH 77 K HOH 6 1_555 B HOH 78 K HOH 6 1_555 B HOH 79 K HOH 6 1_555 B DC 9 B DC 3 8 4_466 B DG 10 B DG 4 8 4_466 B DG 12 B DG 6 8 1_555 B CU 14 G CU 8 4_466 B HOH 27 K HOH 8 1_555 B HOH 73 K HOH 8 1_555 B HOH 76 K HOH 8 4_466 B HOH 77 K HOH 8 4_466 B DG 10 B DG 4 3 1_555 B DC 11 B DC 5 3 1_555 B HOH 26 K HOH 3 1_555 19 P 21 21 21