0.016402
0.009469
0.000000
0.000000
0.018939
0.000000
0.000000
0.000000
0.010302
0.00000
0.00000
0.00000
Gassner, N.C.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
60.970
60.970
97.070
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C4 H10 O2 S2
154.251
2-HYDROXYETHYL DISULFIDE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
S
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
Y
161
N
C
Y
162
N
N
Y
163
N
C
Y
164
N
C
Y
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
S
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
S
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
R
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
N
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
55
1967
1970
10.1006/jmbi.1999.3220
10666571
Use of differentially substituted selenomethionine proteins in X-ray structure determination.
1999
US
Biochemistry
BICHAW
0033
0006-2960
38
14451
14460
10.1021/bi9915519
Methionine and Alanine Substitutions Show that the Formation of Wild-type-like Structure in the Carboxy-terminal Domain of T4 Lysozyme is a Rate-Limiting Step in Folding
1999
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
12155
12158
10.1073/pnas.93.22.12155
A Test of the "jigsaw-puzzle" Model for Protein Folding by Multiple Methionine Substitutions within the Core of T4 lysozyme
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
193
189
Structure of Bacteriophage T4 Lysozyme Refined at 1.7 A Resolution
1987
10.2210/pdb1d3f/pdb
pdb_00001d3f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
AREA DETECTOR
SDMS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
18646.400
LYSOZYME
3.2.1.17
C54T, I58M, C97A
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
154.251
2-HYDROXYETHYL DISULFIDE
1
syn
non-polymer
18.015
water
116
nat
water
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVMTKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVMTKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
GENE E
10665
Enterobacteria phage T4
562
Escherichia coli
PHS1403
1
2.79
55.96
VAPOR DIFFUSION, HANGING DROP
6.9
NA2PO4, NACL , pH 6.9, VAPOR DIFFUSION, HANGING DROP
277.0
exptl_crystal_grow
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Experimental preparation
Database references
Derived calculations
Data collection
1
0
1999-10-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
1
4
2021-11-03
1
5
2024-02-07
_exptl_crystal_grow.temp
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
T4 LYSOZYME MUTANT I78A
T4 LYSOZYME MUTANT I78M
T4 LYSOZYME MUTANT L84M
T4 LYSOZYME MUTANT V87M
T4 LYSOZYME MUTANT L91A
T4 LYSOZYME MUTANT L91M
T4 LYSOZYME MUTANT I100M
T4 LYSOZYME MUTANT V103M
T4 LYSOZYME MUTANT F104M
T4 LYSOZYME MUTANT V111M
T4 LYSOZYME MUTANT M106A
T4 LYSOZYME MUTANT L118M
T4 LYSOZYME MUTANT L121M
T4 LYSOZYME MUTANT L133M
T4 LYSOZYME MUTANT V149M
T4 LYSOZYME MUTANT L118A
T4 LYSOZYME MUTANT I27M
T4 LYSOZYME MUTANT I50M
T4 LYSOZYME MUTANT I58M
T4 LYSOZYME MUTANT L66M
RCSB
Y
RCSB
1999-09-29
REL
REL
CL
CHLORIDE ION
HED
2-HYDROXYETHYL DISULFIDE
HOH
water
CL
0
2
CL
CL
173
A
CL
0
2
CL
CL
178
A
HED
0
3
HED
HED
170
A
HOH
0
4
HOH
HOH
171
A
HOH
0
4
HOH
HOH
172
A
HOH
0
4
HOH
HOH
174
A
HOH
0
4
HOH
HOH
175
A
HOH
0
4
HOH
HOH
176
A
HOH
0
4
HOH
HOH
177
A
HOH
0
4
HOH
HOH
179
A
HOH
0
4
HOH
HOH
180
A
HOH
0
4
HOH
HOH
181
A
HOH
0
4
HOH
HOH
182
A
HOH
0
4
HOH
HOH
183
A
HOH
0
4
HOH
HOH
184
A
HOH
0
4
HOH
HOH
185
A
HOH
0
4
HOH
HOH
186
A
HOH
0
4
HOH
HOH
187
A
HOH
0
4
HOH
HOH
188
A
HOH
0
4
HOH
HOH
189
A
HOH
0
4
HOH
HOH
190
A
HOH
0
4
HOH
HOH
191
A
HOH
0
4
HOH
HOH
192
A
HOH
0
4
HOH
HOH
193
A
HOH
0
4
HOH
HOH
194
A
HOH
0
4
HOH
HOH
195
A
HOH
0
4
HOH
HOH
196
A
HOH
0
4
HOH
HOH
197
A
HOH
0
4
HOH
HOH
198
A
HOH
0
4
HOH
HOH
200
A
HOH
0
4
HOH
HOH
201
A
HOH
0
4
HOH
HOH
202
A
HOH
0
4
HOH
HOH
203
A
HOH
0
4
HOH
HOH
204
A
HOH
0
4
HOH
HOH
206
A
HOH
0
4
HOH
HOH
207
A
HOH
0
4
HOH
HOH
208
A
HOH
0
4
HOH
HOH
209
A
HOH
0
4
HOH
HOH
210
A
HOH
0
4
HOH
HOH
211
A
HOH
0
4
HOH
HOH
213
A
HOH
0
4
HOH
HOH
214
A
HOH
0
4
HOH
HOH
215
A
HOH
0
4
HOH
HOH
216
A
HOH
0
4
HOH
HOH
217
A
HOH
0
4
HOH
HOH
218
A
HOH
0
4
HOH
HOH
219
A
HOH
0
4
HOH
HOH
220
A
HOH
0
4
HOH
HOH
221
A
HOH
0
4
HOH
HOH
222
A
HOH
0
4
HOH
HOH
223
A
HOH
0
4
HOH
HOH
224
A
HOH
0
4
HOH
HOH
225
A
HOH
0
4
HOH
HOH
226
A
HOH
0
4
HOH
HOH
227
A
HOH
0
4
HOH
HOH
228
A
HOH
0
4
HOH
HOH
229
A
HOH
0
4
HOH
HOH
230
A
HOH
0
4
HOH
HOH
231
A
HOH
0
4
HOH
HOH
232
A
HOH
0
4
HOH
HOH
233
A
HOH
0
4
HOH
HOH
235
A
HOH
0
4
HOH
HOH
237
A
HOH
0
4
HOH
HOH
238
A
HOH
0
4
HOH
HOH
239
A
HOH
0
4
HOH
HOH
240
A
HOH
0
4
HOH
HOH
242
A
HOH
0
4
HOH
HOH
244
A
HOH
0
4
HOH
HOH
245
A
HOH
0
4
HOH
HOH
246
A
HOH
0
4
HOH
HOH
247
A
HOH
0
4
HOH
HOH
249
A
HOH
0
4
HOH
HOH
250
A
HOH
0
4
HOH
HOH
251
A
HOH
0
4
HOH
HOH
253
A
HOH
0
4
HOH
HOH
254
A
HOH
0
4
HOH
HOH
256
A
HOH
0
4
HOH
HOH
257
A
HOH
0
4
HOH
HOH
259
A
HOH
0
4
HOH
HOH
260
A
HOH
0
4
HOH
HOH
261
A
HOH
0
4
HOH
HOH
265
A
HOH
0
4
HOH
HOH
266
A
HOH
0
4
HOH
HOH
267
A
HOH
0
4
HOH
HOH
268
A
HOH
0
4
HOH
HOH
269
A
HOH
0
4
HOH
HOH
270
A
HOH
0
4
HOH
HOH
271
A
HOH
0
4
HOH
HOH
272
A
HOH
0
4
HOH
HOH
273
A
HOH
0
4
HOH
HOH
274
A
HOH
0
4
HOH
HOH
276
A
HOH
0
4
HOH
HOH
277
A
HOH
0
4
HOH
HOH
278
A
HOH
0
4
HOH
HOH
280
A
HOH
0
4
HOH
HOH
281
A
HOH
0
4
HOH
HOH
282
A
HOH
0
4
HOH
HOH
283
A
HOH
0
4
HOH
HOH
286
A
HOH
0
4
HOH
HOH
288
A
HOH
0
4
HOH
HOH
291
A
HOH
0
4
HOH
HOH
293
A
HOH
0
4
HOH
HOH
294
A
HOH
0
4
HOH
HOH
295
A
HOH
0
4
HOH
HOH
296
A
HOH
0
4
HOH
HOH
298
A
HOH
0
4
HOH
HOH
299
A
HOH
0
4
HOH
HOH
300
A
HOH
0
4
HOH
HOH
301
A
HOH
0
4
HOH
HOH
302
A
HOH
0
4
HOH
HOH
303
A
HOH
0
4
HOH
HOH
306
A
HOH
0
4
HOH
HOH
308
A
HOH
0
4
HOH
HOH
309
A
HOH
0
4
HOH
HOH
311
A
HOH
0
4
HOH
HOH
314
A
HOH
0
4
HOH
HOH
315
A
HOH
0
4
HOH
HOH
319
A
HOH
0
4
HOH
HOH
321
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
MET
58
n
58
MET
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
n
163
163
A
n
164
164
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
18
A
O
TYR
18
A
N
THR
26
A
N
THR
26
A
O
ILE
27
A
O
ILE
27
A
N
HIS
31
A
N
HIS
31
1
A
ASN
163
A
ASN
163
1
Y
1
A
LEU
164
A
LEU
164
1
Y
1
5.07
0.50
120.30
125.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
6.12
0.90
118.30
124.42
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-8.36
0.90
118.30
109.94
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
3.88
0.50
120.30
124.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
52
52
52
N
1
-3.21
0.50
120.30
117.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
52
52
52
N
1
-5.89
0.90
118.30
112.41
A
A
A
CB
CG
OD2
ASP
ASP
ASP
61
61
61
N
1
-8.49
0.90
118.30
109.81
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
5.37
0.50
120.30
125.67
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
80
80
80
N
1
-5.01
0.50
120.30
115.29
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
80
80
80
N
1
-5.57
0.90
118.30
112.73
A
A
A
CB
CG
OD2
ASP
ASP
ASP
89
89
89
N
1
7.87
0.90
118.30
126.17
A
A
A
CB
CG
OD1
ASP
ASP
ASP
92
92
92
N
1
-7.93
0.90
118.30
110.37
A
A
A
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
3.26
0.50
120.30
123.56
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
N
1
7.48
0.90
118.30
125.78
A
A
A
CB
CG
OD1
ASP
ASP
ASP
127
127
127
N
1
-9.00
1.40
123.60
114.60
A
A
A
CD
NE
CZ
ARG
ARG
ARG
145
145
145
N
1
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
148
148
148
N
1
5.63
0.90
118.30
123.93
A
A
A
CB
CG
OD1
ASP
ASP
ASP
159
159
159
N
1
A
A
CD
OE2
GLU
GLU
45
45
0.066
0.011
1.252
1.318
N
1
A
A
CD
OE2
GLU
GLU
64
64
0.070
0.011
1.252
1.322
N
1
A
A
CD
OE2
GLU
GLU
108
108
0.074
0.011
1.252
1.326
N
1
A
A
O1
O1
HED
HED
170
170
2.09
1_555
5_555
1
A
ILE
29
-105.59
78.22
1
A
PHE
114
-92.34
54.79
0.1590000
0.1590000
0.1590000
2.05
30.0
14195
14195
91.0
1
TNT PROTGEO
2.05
30.0
116
1418
10
0
1292
2.81
.017
25.1
1.81
30.0
1D3F
16642
16642
0.0660000
1
8.6
3.0
85.0
0.2680000
1.81
1.91
1.7
47
refinement
TNT
data reduction
AUTOSTRAT
data scaling
SDMS
phasing
TNT
N-TERMINAL DOMAIN CORE METHIONINE MUTATION
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
1
11
A
SER
38
A
SER
38
HELX_P
A
GLY
51
A
GLY
51
1
2
14
A
THR
59
A
THR
59
HELX_P
A
ARG
80
A
ARG
80
1
3
22
A
LYS
83
A
LYS
83
HELX_P
A
LEU
91
A
LEU
91
1
4
9
A
ASP
92
A
ASP
92
HELX_P
A
GLY
107
A
GLY
107
1
5
16
A
MET
106
A
MET
106
HELX_P
A
GLY
113
A
GLY
113
1
6
8
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
7
10
A
ARG
125
A
ARG
125
HELX_P
A
LYS
135
A
LYS
135
1
8
11
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
9
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
10
15
A
TRP
158
A
TRP
158
HELX_P
A
LYS
162
A
LYS
162
5
11
5
HYDROLASE
HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, METHIONINE CORE MUTANT, PROTEIN ENGINEERING, PROTEIN FOLDING, HYDROLASE
LYS_BPT4
UNP
1
P00720
1
164
1D3F
1
164
P00720
A
1
1
164
1
CYS
engineered mutation
THR
54
1D3F
A
P00720
UNP
54
54
1
ILE
engineered mutation
MET
58
1D3F
A
P00720
UNP
58
58
1
CYS
engineered mutation
ALA
97
1D3F
A
P00720
UNP
97
97
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
THR
34
A
THR
34
BINDING SITE FOR RESIDUE CL A 173
A
CL
173
Software
6
BINDING SITE FOR RESIDUE CL A 178
A
CL
178
Software
3
BINDING SITE FOR RESIDUE HED A 170
A
HED
170
Software
7
A
LYS
124
A
LYS
124
6
4_655
A
THR
142
A
THR
142
6
1_555
A
ASN
144
A
ASN
144
6
1_555
A
ARG
145
A
ARG
145
6
1_555
A
HOH
209
E
HOH
6
1_555
A
HOH
291
E
HOH
6
4_655
A
LYS
135
A
LYS
135
3
3_665
A
SER
136
A
SER
136
3
3_665
A
HOH
215
E
HOH
3
1_555
A
ILE
3
A
ILE
3
7
1_555
A
ASN
68
A
ASN
68
7
5_555
A
ASP
72
A
ASP
72
7
5_555
A
VAL
75
A
VAL
75
7
5_555
A
ALA
93
A
ALA
93
7
1_555
A
ILE
100
A
ILE
100
7
1_555
A
HOH
195
E
HOH
7
1_555
154
P 32 2 1