0.014006 0.000000 0.002571 0.000000 0.013889 0.000000 0.000000 0.000000 0.013852 0.00000 0.00000 0.00000 Chirgadze, N.Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.36 90.00 71.370 72.010 73.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C32 H37 N3 O3 S 543.719 3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHEN-6-OL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 9 29 36 10739244 The crystal structures of human alpha-thrombin complexed with active site-directed diamino benzo[b]thiophene derivatives: a binding mode for a structurally novel class of inhibitors. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295.0 1 YALE/MSC MIRRORS IMAGE PLATE 1996-02-26 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU RU200 4096.534 ALPHA-THROMBIN 3.4.21.5 LIGHT CHAIN 1 man polymer 29780.219 ALPHA-THROMBIN 3.4.21.5 HEAVY CHAIN 1 man polymer 1548.580 HIRUGEN 1 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 22.990 SODIUM ION 2 syn non-polymer 543.719 3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHEN-6-OL 1 syn non-polymer 18.015 water 113 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR A polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE B polypeptide(L) no yes GDFEEIPEE(TYS)LQ GDFEEIPEEYLQ H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo BLOOD sample 9606 Homo sapiens human Homo BLOOD sample 9606 Homo sapiens medicinal leech Hirudo sample 6421 Hirudo medicinalis 1 2.8 56 VAPOR DIFFUSION, SITTING DROP 5.6 30% PEG3400; 100mM sodium citrate; 200 mM ammonium acetate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Advisory Data collection Derived calculations Structure summary 1 0 2000-10-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc CRYSTAL STRUCTURE OF HUMAN APLHA-THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 4 CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 2 CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 1 CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4- BENZYLPIPERIDINE INHIBITOR RCSB Y RCSB 1999-09-30 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose NA SODIUM ION BT3 3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHEN-6-OL HOH water NAG 500 4 NAG NAG 500 B NA 398 5 NA NA 398 B NA 399 5 NA NA 399 B BT3 400 6 BT3 BT3 400 B HOH 26 7 HOH HOH 37 A HOH 31 7 HOH HOH 38 A HOH 52 7 HOH HOH 39 A HOH 57 7 HOH HOH 40 A HOH 58 7 HOH HOH 41 A HOH 86 7 HOH HOH 42 A HOH 89 7 HOH HOH 43 A HOH 92 7 HOH HOH 44 A HOH 94 7 HOH HOH 45 A HOH 102 7 HOH HOH 46 A HOH 106 7 HOH HOH 47 A HOH 107 7 HOH HOH 48 A HOH 110 7 HOH HOH 49 A HOH 116 7 HOH HOH 50 A HOH 1 7 HOH HOH 501 B HOH 2 7 HOH HOH 502 B HOH 3 7 HOH HOH 503 B HOH 4 7 HOH HOH 504 B HOH 5 7 HOH HOH 505 B HOH 6 7 HOH HOH 506 B HOH 7 7 HOH HOH 507 B HOH 8 7 HOH HOH 508 B HOH 9 7 HOH HOH 509 B HOH 10 7 HOH HOH 510 B HOH 11 7 HOH HOH 511 B HOH 12 7 HOH HOH 512 B HOH 13 7 HOH HOH 513 B HOH 14 7 HOH HOH 514 B HOH 15 7 HOH HOH 515 B HOH 16 7 HOH HOH 516 B HOH 17 7 HOH HOH 517 B HOH 18 7 HOH HOH 518 B HOH 19 7 HOH HOH 519 B HOH 20 7 HOH HOH 520 B HOH 21 7 HOH HOH 521 B HOH 22 7 HOH HOH 522 B HOH 23 7 HOH HOH 523 B HOH 24 7 HOH HOH 524 B HOH 25 7 HOH HOH 525 B HOH 27 7 HOH HOH 526 B HOH 28 7 HOH HOH 527 B HOH 29 7 HOH HOH 528 B HOH 30 7 HOH HOH 529 B HOH 32 7 HOH HOH 530 B HOH 33 7 HOH HOH 531 B HOH 34 7 HOH HOH 532 B HOH 35 7 HOH HOH 533 B HOH 36 7 HOH HOH 534 B HOH 37 7 HOH HOH 535 B HOH 38 7 HOH HOH 536 B HOH 39 7 HOH HOH 537 B HOH 40 7 HOH HOH 538 B HOH 41 7 HOH HOH 539 B HOH 42 7 HOH HOH 540 B HOH 43 7 HOH HOH 541 B HOH 44 7 HOH HOH 542 B HOH 45 7 HOH HOH 543 B HOH 46 7 HOH HOH 544 B HOH 47 7 HOH HOH 545 B HOH 48 7 HOH HOH 546 B HOH 49 7 HOH HOH 547 B HOH 50 7 HOH HOH 548 B HOH 51 7 HOH HOH 549 B HOH 53 7 HOH HOH 550 B HOH 54 7 HOH HOH 551 B HOH 55 7 HOH HOH 552 B HOH 56 7 HOH HOH 553 B HOH 59 7 HOH HOH 554 B HOH 60 7 HOH HOH 555 B HOH 61 7 HOH HOH 556 B HOH 62 7 HOH HOH 557 B HOH 63 7 HOH HOH 558 B HOH 64 7 HOH HOH 559 B HOH 65 7 HOH HOH 560 B HOH 66 7 HOH HOH 561 B HOH 67 7 HOH HOH 562 B HOH 68 7 HOH HOH 563 B HOH 69 7 HOH HOH 564 B HOH 70 7 HOH HOH 565 B HOH 71 7 HOH HOH 566 B HOH 72 7 HOH HOH 567 B HOH 73 7 HOH HOH 568 B HOH 74 7 HOH HOH 569 B HOH 76 7 HOH HOH 570 B HOH 77 7 HOH HOH 571 B HOH 78 7 HOH HOH 572 B HOH 79 7 HOH HOH 573 B HOH 80 7 HOH HOH 574 B HOH 81 7 HOH HOH 575 B HOH 82 7 HOH HOH 576 B HOH 83 7 HOH HOH 577 B HOH 84 7 HOH HOH 578 B HOH 87 7 HOH HOH 579 B HOH 88 7 HOH HOH 580 B HOH 90 7 HOH HOH 581 B HOH 91 7 HOH HOH 582 B HOH 93 7 HOH HOH 583 B HOH 97 7 HOH HOH 584 B HOH 98 7 HOH HOH 585 B HOH 99 7 HOH HOH 586 B HOH 100 7 HOH HOH 587 B HOH 101 7 HOH HOH 588 B HOH 105 7 HOH HOH 589 B HOH 108 7 HOH HOH 590 B HOH 109 7 HOH HOH 591 B HOH 111 7 HOH HOH 592 B HOH 112 7 HOH HOH 593 B HOH 113 7 HOH HOH 594 B HOH 114 7 HOH HOH 595 B HOH 115 7 HOH HOH 596 B HOH 117 7 HOH HOH 597 B HOH 118 7 HOH HOH 598 B HOH 119 7 HOH HOH 599 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A GLU 6 n 6 GLU 6 A ALA 7 n 7 ALA 7 A ASP 8 n 8 ASP 8 A CYS 9 n 9 CYS 9 A GLY 10 n 10 GLY 10 A LEU 11 n 11 LEU 11 A ARG 12 n 12 ARG 12 A PRO 13 n 13 PRO 13 A LEU 14 n 14 LEU 14 A PHE 15 n 15 PHE 15 A GLU 16 n 16 GLU 16 A LYS 17 n 17 LYS 17 A LYS 18 n 18 LYS 18 A SER 19 n 19 SER 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A ASP 22 n 22 ASP 22 A LYS 23 n 23 LYS 23 A THR 24 n 24 THR 24 A GLU 25 n 25 GLU 25 A ARG 26 n 26 ARG 26 A GLU 27 n 27 GLU 27 A LEU 28 n 28 LEU 28 A LEU 29 n 29 LEU 29 A GLU 30 n 30 GLU 30 A SER 31 n 31 SER 31 A TYR 32 n 32 TYR 32 A ILE 33 n 33 ILE 33 A n 34 34 A n 35 35 A n 36 36 A ILE 37 n 1 ILE 37 B VAL 38 n 2 VAL 38 B GLU 39 n 3 GLU 39 B GLY 40 n 4 GLY 40 B SER 41 n 5 SER 41 B ASP 42 n 6 ASP 42 B ALA 43 n 7 ALA 43 B GLU 44 n 8 GLU 44 B ILE 45 n 9 ILE 45 B GLY 46 n 10 GLY 46 B MET 47 n 11 MET 47 B SER 48 n 12 SER 48 B PRO 49 n 13 PRO 49 B TRP 50 n 14 TRP 50 B GLN 51 n 15 GLN 51 B VAL 52 n 16 VAL 52 B MET 53 n 17 MET 53 B LEU 54 n 18 LEU 54 B PHE 55 n 19 PHE 55 B ARG 56 n 20 ARG 56 B LYS 57 n 21 LYS 57 B SER 58 n 22 SER 58 B PRO 59 n 23 PRO 59 B GLN 60 n 24 GLN 60 B GLU 61 n 25 GLU 61 B LEU 62 n 26 LEU 62 B LEU 63 n 27 LEU 63 B CYS 64 n 28 CYS 64 B GLY 65 n 29 GLY 65 B ALA 66 n 30 ALA 66 B SER 67 n 31 SER 67 B LEU 68 n 32 LEU 68 B ILE 69 n 33 ILE 69 B SER 70 n 34 SER 70 B ASP 71 n 35 ASP 71 B ARG 72 n 36 ARG 72 B TRP 73 n 37 TRP 73 B VAL 74 n 38 VAL 74 B LEU 75 n 39 LEU 75 B THR 76 n 40 THR 76 B ALA 77 n 41 ALA 77 B ALA 78 n 42 ALA 78 B HIS 79 n 43 HIS 79 B CYS 80 n 44 CYS 80 B LEU 81 n 45 LEU 81 B LEU 82 n 46 LEU 82 B TYR 83 n 47 TYR 83 B PRO 84 n 48 PRO 84 B PRO 85 n 49 PRO 85 B TRP 86 n 50 TRP 86 B ASP 87 n 51 ASP 87 B LYS 88 n 52 LYS 88 B ASN 89 n 53 ASN 89 B PHE 90 n 54 PHE 90 B THR 91 n 55 THR 91 B GLU 92 n 56 GLU 92 B ASN 93 n 57 ASN 93 B ASP 94 n 58 ASP 94 B LEU 95 n 59 LEU 95 B LEU 96 n 60 LEU 96 B VAL 97 n 61 VAL 97 B ARG 98 n 62 ARG 98 B ILE 99 n 63 ILE 99 B GLY 100 n 64 GLY 100 B LYS 101 n 65 LYS 101 B HIS 102 n 66 HIS 102 B SER 103 n 67 SER 103 B ARG 104 n 68 ARG 104 B THR 105 n 69 THR 105 B ARG 106 n 70 ARG 106 B TYR 107 n 71 TYR 107 B GLU 108 n 72 GLU 108 B ARG 109 n 73 ARG 109 B ASN 110 n 74 ASN 110 B ILE 111 n 75 ILE 111 B GLU 112 n 76 GLU 112 B LYS 113 n 77 LYS 113 B ILE 114 n 78 ILE 114 B SER 115 n 79 SER 115 B MET 116 n 80 MET 116 B LEU 117 n 81 LEU 117 B GLU 118 n 82 GLU 118 B LYS 119 n 83 LYS 119 B ILE 120 n 84 ILE 120 B TYR 121 n 85 TYR 121 B ILE 122 n 86 ILE 122 B HIS 123 n 87 HIS 123 B PRO 124 n 88 PRO 124 B ARG 125 n 89 ARG 125 B TYR 126 n 90 TYR 126 B ASN 127 n 91 ASN 127 B TRP 128 n 92 TRP 128 B ARG 129 n 93 ARG 129 B GLU 130 n 94 GLU 130 B ASN 131 n 95 ASN 131 B LEU 132 n 96 LEU 132 B ASP 133 n 97 ASP 133 B ARG 134 n 98 ARG 134 B ASP 135 n 99 ASP 135 B ILE 136 n 100 ILE 136 B ALA 137 n 101 ALA 137 B LEU 138 n 102 LEU 138 B MET 139 n 103 MET 139 B LYS 140 n 104 LYS 140 B LEU 141 n 105 LEU 141 B LYS 142 n 106 LYS 142 B LYS 143 n 107 LYS 143 B PRO 144 n 108 PRO 144 B VAL 145 n 109 VAL 145 B ALA 146 n 110 ALA 146 B PHE 147 n 111 PHE 147 B SER 148 n 112 SER 148 B ASP 149 n 113 ASP 149 B TYR 150 n 114 TYR 150 B ILE 151 n 115 ILE 151 B HIS 152 n 116 HIS 152 B PRO 153 n 117 PRO 153 B VAL 154 n 118 VAL 154 B CYS 155 n 119 CYS 155 B LEU 156 n 120 LEU 156 B PRO 157 n 121 PRO 157 B ASP 158 n 122 ASP 158 B ARG 159 n 123 ARG 159 B GLU 160 n 124 GLU 160 B THR 161 n 125 THR 161 B ALA 162 n 126 ALA 162 B ALA 163 n 127 ALA 163 B SER 164 n 128 SER 164 B LEU 165 n 129 LEU 165 B LEU 166 n 130 LEU 166 B GLN 167 n 131 GLN 167 B ALA 168 n 132 ALA 168 B GLY 169 n 133 GLY 169 B TYR 170 n 134 TYR 170 B LYS 171 n 135 LYS 171 B GLY 172 n 136 GLY 172 B ARG 173 n 137 ARG 173 B VAL 174 n 138 VAL 174 B THR 175 n 139 THR 175 B GLY 176 n 140 GLY 176 B TRP 177 n 141 TRP 177 B GLY 178 n 142 GLY 178 B ASN 179 n 143 ASN 179 B LEU 180 n 144 LEU 180 B LYS 181 n 145 LYS 181 B GLU 182 n 146 GLU 182 B THR 183 n 147 THR 183 B n 148 184 B n 149 185 B n 150 186 B n 151 187 B n 152 188 B n 153 189 B n 154 190 B GLY 191 n 155 GLY 191 B GLN 192 n 156 GLN 192 B PRO 193 n 157 PRO 193 B SER 194 n 158 SER 194 B VAL 195 n 159 VAL 195 B LEU 196 n 160 LEU 196 B GLN 197 n 161 GLN 197 B VAL 198 n 162 VAL 198 B VAL 199 n 163 VAL 199 B ASN 200 n 164 ASN 200 B LEU 201 n 165 LEU 201 B PRO 202 n 166 PRO 202 B ILE 203 n 167 ILE 203 B VAL 204 n 168 VAL 204 B GLU 205 n 169 GLU 205 B ARG 206 n 170 ARG 206 B PRO 207 n 171 PRO 207 B VAL 208 n 172 VAL 208 B CYS 209 n 173 CYS 209 B LYS 210 n 174 LYS 210 B ASP 211 n 175 ASP 211 B SER 212 n 176 SER 212 B THR 213 n 177 THR 213 B ARG 214 n 178 ARG 214 B ILE 215 n 179 ILE 215 B ARG 216 n 180 ARG 216 B ILE 217 n 181 ILE 217 B THR 218 n 182 THR 218 B ASP 219 n 183 ASP 219 B ASN 220 n 184 ASN 220 B MET 221 n 185 MET 221 B PHE 222 n 186 PHE 222 B CYS 223 n 187 CYS 223 B ALA 224 n 188 ALA 224 B GLY 225 n 189 GLY 225 B TYR 226 n 190 TYR 226 B LYS 227 n 191 LYS 227 B PRO 228 n 192 PRO 228 B ASP 229 n 193 ASP 229 B GLU 230 n 194 GLU 230 B GLY 231 n 195 GLY 231 B LYS 232 n 196 LYS 232 B ARG 233 n 197 ARG 233 B GLY 234 n 198 GLY 234 B ASP 235 n 199 ASP 235 B ALA 236 n 200 ALA 236 B CYS 237 n 201 CYS 237 B GLU 238 n 202 GLU 238 B GLY 239 n 203 GLY 239 B ASP 240 n 204 ASP 240 B SER 241 n 205 SER 241 B GLY 242 n 206 GLY 242 B GLY 243 n 207 GLY 243 B PRO 244 n 208 PRO 244 B PHE 245 n 209 PHE 245 B VAL 246 n 210 VAL 246 B MET 247 n 211 MET 247 B LYS 248 n 212 LYS 248 B SER 249 n 213 SER 249 B PRO 250 n 214 PRO 250 B PHE 251 n 215 PHE 251 B ASN 252 n 216 ASN 252 B ASN 253 n 217 ASN 253 B ARG 254 n 218 ARG 254 B TRP 255 n 219 TRP 255 B TYR 256 n 220 TYR 256 B GLN 257 n 221 GLN 257 B MET 258 n 222 MET 258 B GLY 259 n 223 GLY 259 B ILE 260 n 224 ILE 260 B VAL 261 n 225 VAL 261 B SER 262 n 226 SER 262 B TRP 263 n 227 TRP 263 B GLY 264 n 228 GLY 264 B GLU 265 n 229 GLU 265 B GLY 266 n 230 GLY 266 B CYS 267 n 231 CYS 267 B ASP 268 n 232 ASP 268 B ARG 269 n 233 ARG 269 B ASP 270 n 234 ASP 270 B GLY 271 n 235 GLY 271 B LYS 272 n 236 LYS 272 B TYR 273 n 237 TYR 273 B GLY 274 n 238 GLY 274 B PHE 275 n 239 PHE 275 B TYR 276 n 240 TYR 276 B THR 277 n 241 THR 277 B HIS 278 n 242 HIS 278 B VAL 279 n 243 VAL 279 B PHE 280 n 244 PHE 280 B ARG 281 n 245 ARG 281 B LEU 282 n 246 LEU 282 B LYS 283 n 247 LYS 283 B LYS 284 n 248 LYS 284 B TRP 285 n 249 TRP 285 B ILE 286 n 250 ILE 286 B GLN 287 n 251 GLN 287 B LYS 288 n 252 LYS 288 B VAL 289 n 253 VAL 289 B ILE 290 n 254 ILE 290 B ASP 291 n 255 ASP 291 B GLN 292 n 256 GLN 292 B PHE 293 n 257 PHE 293 B n 258 294 B n 259 295 B GLY 300 n 1 GLY 300 H ASP 301 n 2 ASP 301 H PHE 302 n 3 PHE 302 H GLU 303 n 4 GLU 303 H GLU 304 n 5 GLU 304 H ILE 305 n 6 ILE 305 H PRO 306 n 7 PRO 306 H GLU 307 n 8 GLU 307 H GLU 308 n 9 GLU 308 H TYS 309 n 10 TYS 309 H LEU 310 n 11 LEU 310 H GLN 311 n 12 GLN 311 H author_defined_assembly 3 trimeric B LYS 210 B O LYS 174 1_555 B NA 398 E NA NA 1_555 B THR 213 B O THR 177 1_555 81.2 B LYS 210 B O LYS 174 1_555 B NA 398 E NA NA 1_555 B PHE 251 B O PHE 215 4_446 98.0 B THR 213 B O THR 177 1_555 B NA 398 E NA NA 1_555 B PHE 251 B O PHE 215 4_446 99.6 B LYS 210 B O LYS 174 1_555 B NA 398 E NA NA 1_555 B HOH 547 I O HOH 1_555 77.8 B THR 213 B O THR 177 1_555 B NA 398 E NA NA 1_555 B HOH 547 I O HOH 1_555 158.9 B PHE 251 B O PHE 215 4_446 B NA 398 E NA NA 1_555 B HOH 547 I O HOH 1_555 81.1 B LYS 210 B O LYS 174 1_555 B NA 398 E NA NA 1_555 B HOH 550 I O HOH 1_555 169.2 B THR 213 B O THR 177 1_555 B NA 398 E NA NA 1_555 B HOH 550 I O HOH 1_555 92.6 B PHE 251 B O PHE 215 4_446 B NA 398 E NA NA 1_555 B HOH 550 I O HOH 1_555 91.8 B HOH 547 I O HOH 1_555 B NA 398 E NA NA 1_555 B HOH 550 I O HOH 1_555 108.5 B ARG 269 B O ARG 233 1_555 B NA 399 F NA NA 1_555 B LYS 272 B O LYS 236 1_555 94.5 B ARG 269 B O ARG 233 1_555 B NA 399 F NA NA 1_555 B HOH 513 I O HOH 1_555 150.8 B LYS 272 B O LYS 236 1_555 B NA 399 F NA NA 1_555 B HOH 513 I O HOH 1_555 73.1 B ARG 269 B O ARG 233 1_555 B NA 399 F NA NA 1_555 B HOH 526 I O HOH 1_555 100.7 B LYS 272 B O LYS 236 1_555 B NA 399 F NA NA 1_555 B HOH 526 I O HOH 1_555 91.3 B HOH 513 I O HOH 1_555 B NA 399 F NA NA 1_555 B HOH 526 I O HOH 1_555 105.9 B ARG 269 B O ARG 233 1_555 B NA 399 F NA NA 1_555 B HOH 552 I O HOH 1_555 100.1 B LYS 272 B O LYS 236 1_555 B NA 399 F NA NA 1_555 B HOH 552 I O HOH 1_555 153.8 B HOH 513 I O HOH 1_555 B NA 399 F NA NA 1_555 B HOH 552 I O HOH 1_555 83.7 B HOH 526 I O HOH 1_555 B NA 399 F NA NA 1_555 B HOH 552 I O HOH 1_555 107.0 B ASN 89 GLYCOSYLATION SITE B ASN 53 ASN H TYS 309 O-SULFO-L-TYROSINE C TYS 10 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B O SER 41 B O SER 5 B N VAL 198 B N VAL 162 B O LEU 165 B O LEU 129 B N GLY 172 B N GLY 136 B N THR 175 B N THR 139 B O PRO 244 B O PRO 208 B O MET 247 B O MET 211 B N TYR 256 B N TYR 220 B O TRP 263 B O TRP 227 B N PHE 275 B N PHE 239 B N TYR 276 B N TYR 240 B O PHE 222 B O PHE 186 B N ARG 56 B N ARG 20 B O GLU 61 B O GLU 25 B O ALA 66 B O ALA 30 B N VAL 52 B N VAL 16 B O PHE 55 B O PHE 19 B N LEU 96 B N LEU 60 B N ILE 99 B N ILE 63 B O LYS 113 B O LYS 77 B N TYR 121 B N TYR 85 B O LEU 138 B O LEU 102 B O MET 139 B O MET 103 B N VAL 38 B N VAL 2 B N TYR 83 B N TYR 47 B O LYS 88 B O LYS 52 1 A THR 1 A THR 1 1 Y 1 A PHE 2 A PHE 2 1 Y 1 A GLY 3 A GLY 3 1 Y 1 A SER 4 A SER 4 1 Y 1 A GLY 5 A GLY 5 1 Y 1 A ASP 34 A ASP 34 1 Y 1 A GLY 35 A GLY 35 1 Y 1 A ARG 36 A ARG 36 1 Y 1 B TRP 184 B TRP 148 1 Y 1 B THR 185 B THR 149 1 Y 1 B ALA 186 B ALA 150 1 Y 1 B ASN 187 B ASN 151 1 Y 1 B VAL 188 B VAL 152 1 Y 1 B GLY 189 B GLY 153 1 Y 1 B LYS 190 B LYS 154 1 Y 1 B GLY 294 B GLY 258 1 Y 1 B GLU 295 B GLU 259 1 Y 1 A PHE 15 -130.00 -82.63 1 B TYR 83 -159.65 86.30 1 B ASN 89 -160.53 82.37 1 B HIS 102 -135.40 -51.00 1 B ASN 110 67.33 -1.32 1 B SER 262 -107.22 -66.46 0.214 0.179 0.179 2.10 20.00 895 18676 4.2 87.2 RANDOM 1 2.000 2.10 20.00 113 2532 55 0 2364 0.010 1.45 26.85 1.00 0.229 0.97 2.2 1805 8 4.3 81.1 2.100 30.000 1D3P 0.000 0.07 1 20.2000 3.000 98.0 0.289 2.10 2.14 3.2 1 3.00 97.0 data reduction DENZO data scaling SCALEPACK model building X-PLOR refinement X-PLOR 98.0 phasing X-PLOR ALPHA-THROMBIN (E.C.3.4.21.5) CRYSTAL STRUCTURE OF HUMAN APLHA-THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 3 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 7 N N 7 N N A PHE 15 A PHE 15 HELX_P A SER 19 A SER 19 5 1 5 A THR 24 A THR 24 HELX_P A TYR 32 A TYR 32 1 2 9 B ALA 77 B ALA 41 HELX_P B CYS 80 B CYS 44 5 3 4 B PRO 84 B PRO 48 HELX_P B ASP 87 B ASP 51 5 4 4 B THR 91 B THR 55 HELX_P B ASN 93 B ASN 57 5 5 3 B ASP 158 B ASP 122 HELX_P B LEU 166 B LEU 130 1 6 9 B GLU 205 B GLU 169 HELX_P B ASP 211 B ASP 175 1 7 7 B LEU 282 B LEU 246 HELX_P B PHE 293 B PHE 257 1 8 12 disulf 2.023 A CYS 9 A SG CYS 9 1_555 B CYS 155 B SG CYS 119 1_555 disulf 2.035 B CYS 64 B SG CYS 28 1_555 B CYS 80 B SG CYS 44 1_555 disulf 2.020 B CYS 209 B SG CYS 173 1_555 B CYS 223 B SG CYS 187 1_555 disulf 2.030 B CYS 237 B SG CYS 201 1_555 B CYS 267 B SG CYS 231 1_555 covale 1.459 one N-Glycosylation B ASN 89 B ND2 ASN 53 1_555 B NAG 500 D C1 NAG 1_555 covale 1.330 both H GLU 308 C C GLU 9 1_555 H TYS 309 C N TYS 10 1_555 covale 1.326 both H TYS 309 C C TYS 10 1_555 H LEU 310 C N LEU 11 1_555 metalc 2.542 B LYS 210 B O LYS 174 1_555 B NA 398 E NA NA 1_555 metalc 2.344 B THR 213 B O THR 177 1_555 B NA 398 E NA NA 1_555 metalc 2.420 B PHE 251 B O PHE 215 4_446 B NA 398 E NA NA 1_555 metalc 2.518 B ARG 269 B O ARG 233 1_555 B NA 399 F NA NA 1_555 metalc 2.499 B LYS 272 B O LYS 236 1_555 B NA 399 F NA NA 1_555 metalc 2.550 B NA 398 E NA NA 1_555 B HOH 547 I O HOH 1_555 metalc 2.303 B NA 398 E NA NA 1_555 B HOH 550 I O HOH 1_555 metalc 2.555 B NA 399 F NA NA 1_555 B HOH 513 I O HOH 1_555 metalc 2.561 B NA 399 F NA NA 1_555 B HOH 526 I O HOH 1_555 metalc 2.616 B NA 399 F NA NA 1_555 B HOH 552 I O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR THROMBIN, BENZO[B]THIOPHENE, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR COMPLEX B SER 58 B SER 22 1 B PRO 59 B PRO 23 -0.14 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITHA_HIRME UNP 3 54 P28501 328 363 1D3P 1 36 P00734 A 1 1 36 364 622 1D3P 37 295 P00734 B 2 1 259 54 65 1D3P 300 311 P28501 H 3 1 12 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B SER 41 B SER 5 B ASP 42 B ASP 6 B GLN 197 B GLN 161 B PRO 202 B PRO 166 B LYS 171 B LYS 135 B GLY 176 B GLY 140 B PRO 244 B PRO 208 B LYS 248 B LYS 212 B TRP 255 B TRP 219 B TRP 263 B TRP 227 B GLY 274 B GLY 238 B HIS 278 B HIS 242 B MET 221 B MET 185 B ALA 224 B ALA 188 B GLN 51 B GLN 15 B ARG 56 B ARG 20 B GLU 61 B GLU 25 B LEU 68 B LEU 32 B GLN 51 B GLN 15 B ARG 56 B ARG 20 B LEU 95 B LEU 59 B ILE 99 B ILE 63 B LYS 113 B LYS 77 B ILE 122 B ILE 86 B ALA 137 B ALA 101 B LEU 141 B LEU 105 B TRP 73 B TRP 37 B THR 76 B THR 40 B LEU 82 B LEU 46 B TYR 83 B TYR 47 B LYS 88 B LYS 52 B ASN 89 B ASN 53 5 C 1 2 1