0.018587 0.000000 0.000000 0.000000 0.018587 0.000000 0.000000 0.000000 0.023202 0.00000 0.00000 0.00000 Rhee, S. Han, Z.-J. Liu, K. Todd Miles, H.T. Davies, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 53.800 53.800 43.100 C9 H12 Br N2 O8 P 387.078 n 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N BR N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N O N 35 N P N 36 N O N 37 N O N 38 N O N 39 N C N 40 R C N 41 N O N 42 S C N 43 N O N 44 N C N 45 R C Y 46 N N Y 47 N C Y 48 N N Y 49 N C Y 50 N C N 51 N N Y 52 N N Y 53 N C Y 54 N N Y 55 N C N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N O N 71 N P N 72 N O N 73 N O N 74 N O N 75 N C N 76 R C N 77 N O N 78 S C N 79 N O N 80 N C N 81 R C N 82 N N N 83 N C N 84 N O N 85 N N N 86 N C N 87 N N N 88 N C N 89 N C N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N O N 105 N P N 106 N O N 107 N O N 108 N O N 109 N C N 110 R C N 111 N O N 112 S C N 113 N O N 114 N C N 115 R C Y 116 N N Y 117 N C Y 118 N N Y 119 N C N 120 N C N 121 N O N 122 N N N 123 N C N 124 N N N 125 N N Y 126 N C N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N O N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing Y 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N doub N 67 N sing N 68 N sing Y 69 N sing Y 70 N doub N 71 N sing Y 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing N 136 N sing Y 137 N doub N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing US Biochemistry BICHAW 0033 0006-2960 38 16810 16815 10.1021/bi991811m 10606513 Structure of a triple helical DNA with a triplex-duplex junction. 1999 To be Published 0353 Crystallization and preliminary X-ray data of a triplex DNA 1999 10.2210/pdb1d3r/pdb pdb_00001d3r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95.0 1 IMAGE PLATE 1998-09-23 MARRESEARCH MAD M x-ray 1 0.9200 1.0 0.919392 1.0 0.914982 1.0 X9B NSLS 0.9200, 0.919392, 0.914982 SYNCHROTRON NSLS BEAMLINE X9B 3705.058 DNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3') 2 syn polymer 2781.823 DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3') 2 syn polymer 18.015 water 157 nat water no yes (DC)(BRU)(DC)(DC)(BRU)(DC)(DC)(DG)(DC)(DG)(DC)(DG) CUCCUCCGCGCG A,C polydeoxyribonucleotide no no (DC)(DG)(DC)(DG)(DC)(DG)(DG)(DA)(DG) CGCGCGGAG B,D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n 1 2.40 48.83 VAPOR DIFFUSION, HANGING DROP 5.20 MPD, NACL, MGCL2, SPERMINE, PH 5.2 AT 298 K, pH 5.20, VAPOR DIFFUSION, HANGING DROP 298 NACL 1 MGCL2 1 SPERMINE 1 MPD 1 MPD 2 -10.713 1 19 B 14 A 11 -3.949 B_DG14:DC11_A 1 0.332 -0.204 0.281 -0.007 -6.715 1 19 B 15 A 10 -4.306 B_DC15:DG10_A 2 -0.146 0.061 0.336 -0.010 -0.264 1 19 B 16 A 9 -3.751 B_DG16:DC9_A 3 -8.434 0.122 0.033 -0.015 7.390 1 19 B 17 A 8 -3.213 B_DC17:DG8_A 4 -8.074 0.064 -0.314 -0.101 4.091 1 19 B 18 A 7 -0.932 B_DG18:DC7_A 5 -11.078 -0.303 -0.120 -0.082 8.390 1 19 B 19 A 6 1.347 B_DG19:DC6_A 6 -12.916 -0.188 -0.048 -0.182 -3.319 1 20 B 20 A 5 2.550 B_DA20:BRU5_A 7 -17.650 -0.046 0.041 -0.072 -1.986 1 19 B 21 A 4 1.614 B_DG21:DC4_A 8 -5.566 -0.364 -0.116 -0.144 5.499 1 19 C 34 D 51 -0.641 C_DC34:DG51_D 9 -13.057 0.268 -0.111 -0.068 7.375 1 20 C 35 D 50 1.918 C_BRU35:DA50_D 10 -15.454 -0.059 0.230 -0.092 1.259 1 19 C 36 D 49 2.026 C_DC36:DG49_D 11 -14.015 0.331 -0.297 -0.198 -7.385 1 19 C 37 D 48 -0.724 C_DC37:DG48_D 12 -15.200 0.195 0.037 -0.032 -4.698 1 19 C 38 D 47 0.984 C_DG38:DC47_D 13 -4.232 -0.414 0.068 -0.072 -4.507 1 19 C 39 D 46 -2.171 C_DC39:DG46_D 14 -12.562 0.214 0.177 -0.114 1.505 1 19 C 40 D 45 1.313 C_DG40:DC45_D 15 -2.020 -0.121 0.168 0.006 4.995 1 19 C 41 D 44 -3.243 C_DC41:DG44_D 16 0.375 0.340 0.251 -0.144 3.311 35.701 B B 14 15 -2.777 A A 11 10 3.326 -1.702 0.617 0.295 BB_DG14DC15:DG10DC11_AA 1 0.179 -0.292 35.661 0.731 -0.980 3.296 30.951 B B 15 16 9.822 A A 10 9 3.233 5.216 -0.599 0.795 BB_DC15DG16:DC9DG10_AA 2 1.158 -2.180 30.498 0.475 1.348 3.166 34.697 B B 16 17 8.199 A A 9 8 3.132 4.862 0.736 -0.025 BB_DG16DC17:DG8DC9_AA 3 4.368 -7.366 34.094 -0.767 -0.583 3.666 36.322 B B 17 18 13.208 A A 8 7 3.506 8.168 -0.204 1.131 BB_DC17DG18:DC7DG8_AA 4 0.325 -0.525 35.420 0.547 0.377 3.155 28.973 B B 18 19 11.454 A A 7 6 3.211 5.693 0.313 0.097 BB_DG18DG19:DC6DC7_AA 5 -1.163 2.339 28.397 -1.042 -0.879 3.332 32.426 B B 19 20 3.776 A A 6 5 3.389 2.107 0.732 -0.838 BB_DG19DA20:BRU5DC6_AA 6 0.094 -0.168 32.359 -1.882 -1.294 3.061 32.932 B B 20 21 11.593 A A 5 4 3.192 6.531 -0.459 -0.342 BB_DA20DG21:DC4BRU5_AA 7 0.370 -0.658 32.294 -1.678 0.870 3.215 -35.239 B C 21 34 1.368 A D 4 51 3.133 -0.828 -0.463 3.367 BC_DG21DC34:DG51DC4_DA 8 0.510 0.843 -35.226 -5.442 -0.691 3.162 33.579 C C 34 35 8.861 D D 51 50 3.278 5.097 0.479 -0.294 CC_DC34BRU35:DA50DG51_DD 9 -2.194 3.815 33.130 -1.337 -1.185 3.314 32.246 C C 35 36 -0.181 D D 50 49 3.355 -0.100 -0.630 -0.724 CC_BRU35DC36:DG49DA50_DD 10 1.969 -3.547 32.187 -1.285 1.492 3.344 32.354 C C 36 37 15.933 D D 49 48 3.533 8.757 -0.451 -0.343 CC_DC36DC37:DG48DG49_DD 11 -3.340 6.076 31.001 -2.279 0.176 3.285 32.042 C C 37 38 15.767 D D 48 47 3.226 8.602 0.571 0.667 CC_DC37DG38:DC47DG48_DD 12 -0.143 0.263 30.894 -0.363 -1.061 3.537 38.996 C C 38 39 1.799 D D 47 46 3.372 1.198 -1.397 1.367 CC_DG38DC39:DG46DC47_DD 13 -4.165 6.252 38.764 1.895 1.559 3.344 28.574 C C 39 40 7.768 D D 46 45 3.261 3.822 0.789 0.974 CC_DC39DG40:DC45DG46_DD 14 -0.593 1.206 28.316 1.092 -1.735 3.264 39.435 C C 40 41 -0.638 D D 45 44 3.266 -0.431 -0.541 0.404 CC_DG40DC41:DG44DC45_DD 15 -0.162 0.240 39.432 0.649 0.782 software chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2000-01-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag RCSB Y RCSB 1999-09-30 REL HOH water HOH 100 3 HOH HOH 100 A HOH 102 3 HOH HOH 102 A HOH 104 3 HOH HOH 104 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 110 3 HOH HOH 110 A HOH 112 3 HOH HOH 112 A HOH 118 3 HOH HOH 118 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 130 3 HOH HOH 130 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 157 3 HOH HOH 157 A HOH 160 3 HOH HOH 160 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 180 3 HOH HOH 180 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 193 3 HOH HOH 193 A HOH 196 3 HOH HOH 196 A HOH 212 3 HOH HOH 212 A HOH 304 3 HOH HOH 304 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 309 3 HOH HOH 309 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 340 3 HOH HOH 340 A HOH 108 3 HOH HOH 108 B HOH 132 3 HOH HOH 132 B HOH 135 3 HOH HOH 135 B HOH 145 3 HOH HOH 145 B HOH 146 3 HOH HOH 146 B HOH 155 3 HOH HOH 155 B HOH 162 3 HOH HOH 162 B HOH 170 3 HOH HOH 170 B HOH 171 3 HOH HOH 171 B HOH 176 3 HOH HOH 176 B HOH 181 3 HOH HOH 181 B HOH 188 3 HOH HOH 188 B HOH 189 3 HOH HOH 189 B HOH 190 3 HOH HOH 190 B HOH 200 3 HOH HOH 200 B HOH 202 3 HOH HOH 202 B HOH 203 3 HOH HOH 203 B HOH 324 3 HOH HOH 324 B HOH 326 3 HOH HOH 326 B HOH 328 3 HOH HOH 328 B HOH 329 3 HOH HOH 329 B HOH 346 3 HOH HOH 346 B HOH 101 3 HOH HOH 101 C HOH 105 3 HOH HOH 105 C HOH 109 3 HOH HOH 109 C HOH 113 3 HOH HOH 113 C HOH 115 3 HOH HOH 115 C HOH 119 3 HOH HOH 119 C HOH 120 3 HOH HOH 120 C HOH 123 3 HOH HOH 123 C HOH 129 3 HOH HOH 129 C HOH 131 3 HOH HOH 131 C HOH 142 3 HOH HOH 142 C HOH 144 3 HOH HOH 144 C HOH 147 3 HOH HOH 147 C HOH 148 3 HOH HOH 148 C HOH 149 3 HOH HOH 149 C HOH 153 3 HOH HOH 153 C HOH 156 3 HOH HOH 156 C HOH 159 3 HOH HOH 159 C HOH 161 3 HOH HOH 161 C HOH 172 3 HOH HOH 172 C HOH 174 3 HOH HOH 174 C HOH 175 3 HOH HOH 175 C HOH 179 3 HOH HOH 179 C HOH 182 3 HOH HOH 182 C HOH 184 3 HOH HOH 184 C HOH 185 3 HOH HOH 185 C HOH 192 3 HOH HOH 192 C HOH 197 3 HOH HOH 197 C HOH 198 3 HOH HOH 198 C HOH 204 3 HOH HOH 204 C HOH 206 3 HOH HOH 206 C HOH 207 3 HOH HOH 207 C HOH 210 3 HOH HOH 210 C HOH 305 3 HOH HOH 305 C HOH 310 3 HOH HOH 310 C HOH 316 3 HOH HOH 316 C HOH 317 3 HOH HOH 317 C HOH 318 3 HOH HOH 318 C HOH 322 3 HOH HOH 322 C HOH 323 3 HOH HOH 323 C HOH 330 3 HOH HOH 330 C HOH 331 3 HOH HOH 331 C HOH 334 3 HOH HOH 334 C HOH 337 3 HOH HOH 337 C HOH 338 3 HOH HOH 338 C HOH 343 3 HOH HOH 343 C HOH 344 3 HOH HOH 344 C HOH 103 3 HOH HOH 103 D HOH 111 3 HOH HOH 111 D HOH 114 3 HOH HOH 114 D HOH 116 3 HOH HOH 116 D HOH 117 3 HOH HOH 117 D HOH 124 3 HOH HOH 124 D HOH 133 3 HOH HOH 133 D HOH 134 3 HOH HOH 134 D HOH 136 3 HOH HOH 136 D HOH 143 3 HOH HOH 143 D HOH 150 3 HOH HOH 150 D HOH 151 3 HOH HOH 151 D HOH 152 3 HOH HOH 152 D HOH 154 3 HOH HOH 154 D HOH 158 3 HOH HOH 158 D HOH 163 3 HOH HOH 163 D HOH 166 3 HOH HOH 166 D HOH 167 3 HOH HOH 167 D HOH 173 3 HOH HOH 173 D HOH 177 3 HOH HOH 177 D HOH 178 3 HOH HOH 178 D HOH 183 3 HOH HOH 183 D HOH 195 3 HOH HOH 195 D HOH 199 3 HOH HOH 199 D HOH 201 3 HOH HOH 201 D HOH 205 3 HOH HOH 205 D HOH 208 3 HOH HOH 208 D HOH 209 3 HOH HOH 209 D HOH 215 3 HOH HOH 215 D HOH 300 3 HOH HOH 300 D HOH 301 3 HOH HOH 301 D HOH 302 3 HOH HOH 302 D HOH 303 3 HOH HOH 303 D HOH 308 3 HOH HOH 308 D HOH 314 3 HOH HOH 314 D HOH 315 3 HOH HOH 315 D HOH 325 3 HOH HOH 325 D HOH 327 3 HOH HOH 327 D HOH 339 3 HOH HOH 339 D HOH 341 3 HOH HOH 341 D HOH 342 3 HOH HOH 342 D HOH 345 3 HOH HOH 345 D C 1 n 1 DC 1 A +U 2 n 2 BRU 2 A C 3 n 3 DC 3 A C 4 n 4 DC 4 A +U 5 n 5 BRU 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A G 8 n 8 DG 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B C 17 n 5 DC 17 B G 18 n 6 DG 18 B G 19 n 7 DG 19 B A 20 n 8 DA 20 B G 21 n 9 DG 21 B C 31 n 1 DC 31 C +U 32 n 2 BRU 32 C C 33 n 3 DC 33 C C 34 n 4 DC 34 C +U 35 n 5 BRU 35 C C 36 n 6 DC 36 C C 37 n 7 DC 37 C G 38 n 8 DG 38 C C 39 n 9 DC 39 C G 40 n 10 DG 40 C C 41 n 11 DC 41 C G 42 n 12 DG 42 C n 1 43 D G 44 n 2 DG 44 D C 45 n 3 DC 45 D G 46 n 4 DG 46 D C 47 n 5 DC 47 D G 48 n 6 DG 48 D G 49 n 7 DG 49 D A 50 n 8 DA 50 D G 51 n 9 DG 51 D author_defined_assembly 4 tetrameric A BRU 2 A BRU 2 DU A BRU 5 A BRU 5 DU C BRU 32 C BRU 2 DU C BRU 35 C BRU 5 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 D P DG 44 D P DG 2 1 Y 1 D OP1 DG 44 D OP1 DG 2 1 Y 1 D OP2 DG 44 D OP2 DG 2 1 Y 1 D DC 43 D DC 1 1 Y 1 A C3' DG 12 PLANAR 1 C C OP1 O DG HOH 42 119 2.01 1 A A O O HOH HOH 107 306 2.03 1 A A O O HOH HOH 102 306 2.06 1 A A OP2 O DG HOH 12 306 2.07 1 C C O O HOH HOH 119 310 2.15 1 A A O O HOH HOH 306 307 2.17 1 A DG 12 0.056 SIDE CHAIN 1 B DG 14 0.049 SIDE CHAIN 1 C DC 39 0.063 SIDE CHAIN 1 D DG 44 0.082 SIDE CHAIN 1 2.45 0.30 108.30 110.75 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 19.37 2.00 112.30 131.67 A A A C4' C3' O3' DG DG DG 12 12 12 N 1 -5.52 0.80 109.40 103.88 B B B O5' C5' C4' DC DC DC 13 13 13 N 1 8.55 1.40 114.30 122.85 C C C N9 C1' C2' DG DG DG 40 40 40 N 1 2.36 0.30 108.30 110.66 C C C O4' C1' N9 DG DG DG 40 40 40 N 1 2.13 0.30 108.30 110.43 C C C O4' C1' N1 DC DC DC 41 41 41 N 1 23.53 2.50 111.00 134.53 D D D O5' C5' C4' DG DG DG 44 44 44 N 1 2.15 0.30 108.30 110.45 D D D O4' C1' N9 DG DG DG 51 51 51 N 1 A C O O HOH HOH 128 119 2.09 1_555 1_565 1 A C O O HOH HOH 309 119 2.13 1_555 1_565 0.275 0.21 0.21 1.80 20.00 2375 21581 10.000 96.3 RANDOM 1 THROUGHOUT 4.000 PARKINSON ET AL. 1.80 20.00 157 980 0 823 0 0.012 24.20 1.800 40.000 1D3R 127674 -3.000 0.043 1 13.3000 5.700 92.0 0.404 1.80 1.86 5.70 100.0 model building SHELX refinement CNS data reduction DENZO data scaling SCALEPACK phasing SHELX CRYSTAL STRUCTURE OF TRIPLEX DNA 1 N N 2 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N covale 1.618 both A DC 1 A O3' DC 1 1_555 A BRU 2 A P BRU 2 1_555 covale 1.610 both A BRU 2 A O3' BRU 2 1_555 A DC 3 A P DC 3 1_555 covale 1.606 both A DC 4 A O3' DC 4 1_555 A BRU 5 A P BRU 5 1_555 covale 1.599 both A BRU 5 A O3' BRU 5 1_555 A DC 6 A P DC 6 1_555 covale 1.603 both C DC 31 C O3' DC 1 1_555 C BRU 32 C P BRU 2 1_555 covale 1.595 both C BRU 32 C O3' BRU 2 1_555 C DC 33 C P DC 3 1_555 covale 1.623 both C DC 34 C O3' DC 4 1_555 C BRU 35 C P BRU 5 1_555 covale 1.625 both C BRU 35 C O3' BRU 5 1_555 C DC 36 C P DC 6 1_555 hydrog DC-DG PAIR A DC 1 A N4 DC 1 1_555 D DG 49 D O6 DG 7 1_555 hydrog HOOGSTEEN A BRU 2 A N3 BRU 2 1_555 D DA 50 D N7 DA 8 1_555 hydrog HOOGSTEEN A BRU 2 A O4 BRU 2 1_555 D DA 50 D N6 DA 8 1_555 hydrog DC-DG PAIR A DC 3 A N4 DC 3 1_555 D DG 51 D O6 DG 9 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 21 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 21 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 21 B N2 DG 9 1_555 hydrog WATSON-CRICK A BRU 5 A N3 BRU 5 1_555 B DA 20 B N1 DA 8 1_555 hydrog WATSON-CRICK A BRU 5 A O4 BRU 5 1_555 B DA 20 B N6 DA 8 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 19 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 19 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 19 B N2 DG 7 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 18 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 18 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 18 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 17 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 17 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 17 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog DG-DC PAIR B DG 19 B O6 DG 7 1_555 C DC 31 C N4 DC 1 1_555 hydrog HOOGSTEEN B DA 20 B N6 DA 8 1_555 C BRU 32 C O4 BRU 2 1_555 hydrog HOOGSTEEN B DA 20 B N7 DA 8 1_555 C BRU 32 C N3 BRU 2 1_555 hydrog DG-DC PAIR B DG 21 B O6 DG 9 1_555 C DC 33 C N4 DC 3 1_555 hydrog WATSON-CRICK C DC 34 C N3 DC 4 1_555 D DG 51 D N1 DG 9 1_555 hydrog WATSON-CRICK C DC 34 C N4 DC 4 1_555 D DG 51 D O6 DG 9 1_555 hydrog WATSON-CRICK C DC 34 C O2 DC 4 1_555 D DG 51 D N2 DG 9 1_555 hydrog WATSON-CRICK C BRU 35 C N3 BRU 5 1_555 D DA 50 D N1 DA 8 1_555 hydrog WATSON-CRICK C BRU 35 C O4 BRU 5 1_555 D DA 50 D N6 DA 8 1_555 hydrog WATSON-CRICK C DC 36 C N3 DC 6 1_555 D DG 49 D N1 DG 7 1_555 hydrog WATSON-CRICK C DC 36 C N4 DC 6 1_555 D DG 49 D O6 DG 7 1_555 hydrog WATSON-CRICK C DC 36 C O2 DC 6 1_555 D DG 49 D N2 DG 7 1_555 hydrog WATSON-CRICK C DC 37 C N3 DC 7 1_555 D DG 48 D N1 DG 6 1_555 hydrog WATSON-CRICK C DC 37 C N4 DC 7 1_555 D DG 48 D O6 DG 6 1_555 hydrog WATSON-CRICK C DC 37 C O2 DC 7 1_555 D DG 48 D N2 DG 6 1_555 hydrog WATSON-CRICK C DG 38 C N1 DG 8 1_555 D DC 47 D N3 DC 5 1_555 hydrog WATSON-CRICK C DG 38 C N2 DG 8 1_555 D DC 47 D O2 DC 5 1_555 hydrog WATSON-CRICK C DG 38 C O6 DG 8 1_555 D DC 47 D N4 DC 5 1_555 hydrog WATSON-CRICK C DC 39 C N3 DC 9 1_555 D DG 46 D N1 DG 4 1_555 hydrog WATSON-CRICK C DC 39 C N4 DC 9 1_555 D DG 46 D O6 DG 4 1_555 hydrog WATSON-CRICK C DC 39 C O2 DC 9 1_555 D DG 46 D N2 DG 4 1_555 hydrog WATSON-CRICK C DG 40 C N1 DG 10 1_555 D DC 45 D N3 DC 3 1_555 hydrog WATSON-CRICK C DG 40 C N2 DG 10 1_555 D DC 45 D O2 DC 3 1_555 hydrog WATSON-CRICK C DG 40 C O6 DG 10 1_555 D DC 45 D N4 DC 3 1_555 hydrog WATSON-CRICK C DC 41 C N3 DC 11 1_555 D DG 44 D N1 DG 2 1_555 hydrog WATSON-CRICK C DC 41 C N4 DC 11 1_555 D DG 44 D O6 DG 2 1_555 hydrog WATSON-CRICK C DC 41 C O2 DC 11 1_555 D DG 44 D N2 DG 2 1_555 DNA TRIPLEX DNA AND ITS JUNCTION WITH A DUPLEX DNA, DNA 1D3R PDB 1 1D3R 1D3R PDB 2 1D3R 1 12 1D3R 1 12 1D3R A 1 1 12 13 21 1D3R 13 21 1D3R B 2 1 9 31 42 1D3R 31 42 1D3R C 1 1 12 43 51 1D3R 43 51 1D3R D 2 1 9 77 tetragonal P 42