8.30
15.087
18.066
19.051
A
N1
5CM
1
HETATM
A
N1
5CM
1
1
1.00
1
N
8.10
13.787
17.865
18.927
A
C2
5CM
1
HETATM
A
C2
5CM
1
1
1.00
1
C
8.20
12.922
18.940
18.781
A
N3
5CM
1
HETATM
A
N3
5CM
1
1
1.00
1
N
6.70
13.527
20.238
18.809
A
C4
5CM
1
HETATM
A
C4
5CM
1
1
1.00
1
C
6.90
14.913
20.382
18.925
A
C5
5CM
1
HETATM
A
C5
5CM
1
1
1.00
1
C
8.00
15.443
21.800
18.897
A
C5A
5CM
1
HETATM
A
C5A
5CM
1
1
1.00
1
C
8.40
15.671
19.299
19.029
A
C6
5CM
1
HETATM
A
C6
5CM
1
1
1.00
1
C
9.90
13.125
16.789
18.892
A
O2
5CM
1
HETATM
A
O2
5CM
1
1
1.00
1
O
7.00
12.584
21.195
18.723
A
N4
5CM
1
HETATM
A
N4
5CM
1
1
1.00
1
N
10.70
15.864
16.743
19.198
A
C1'
5CM
1
HETATM
A
C1'
5CM
1
1
1.00
1
C
13.80
16.548
16.396
17.792
A
C2'
5CM
1
HETATM
A
C2'
5CM
1
1
1.00
1
C
15.80
17.760
15.571
18.338
A
C3'
5CM
1
HETATM
A
C3'
5CM
1
1
1.00
1
C
14.00
18.190
16.186
19.670
A
C4'
5CM
1
HETATM
A
C4'
5CM
1
1
1.00
1
C
10.90
16.954
16.895
19.996
A
O4'
5CM
1
HETATM
A
O4'
5CM
1
1
1.00
1
O
18.50
17.476
14.245
18.780
A
O3'
5CM
1
HETATM
A
O3'
5CM
1
1
1.00
1
O
14.20
19.505
16.880
19.696
A
C5'
5CM
1
HETATM
A
C5'
5CM
1
1
1.00
1
C
16.90
19.205
17.776
18.592
A
O5'
5CM
1
HETATM
A
O5'
5CM
1
1
1.00
1
O
19.90
18.427
13.010
18.311
A
P
DG
2
ATOM
A
P
DG
1
2
1.00
1
P
19.40
19.349
13.504
17.255
A
OP1
DG
2
ATOM
A
OP1
DG
1
2
1.00
1
O
18.30
17.350
12.040
18.300
A
OP2
DG
2
ATOM
A
OP2
DG
1
2
1.00
1
O
19.10
19.517
13.113
19.556
A
O5'
DG
2
ATOM
A
O5'
DG
1
2
1.00
1
O
17.10
18.758
12.597
20.727
A
C5'
DG
2
ATOM
A
C5'
DG
1
2
1.00
1
C
16.20
19.886
12.751
21.759
A
C4'
DG
2
ATOM
A
C4'
DG
1
2
1.00
1
C
14.50
20.356
14.127
21.661
A
O4'
DG
2
ATOM
A
O4'
DG
1
2
1.00
1
O
15.70
19.252
12.569
23.226
A
C3'
DG
2
ATOM
A
C3'
DG
1
2
1.00
1
C
18.60
19.452
11.153
23.502
A
O3'
DG
2
ATOM
A
O3'
DG
1
2
1.00
1
O
13.80
20.167
13.440
23.909
A
C2'
DG
2
ATOM
A
C2'
DG
1
2
1.00
1
C
12.10
20.745
14.536
23.063
A
C1'
DG
2
ATOM
A
C1'
DG
1
2
1.00
1
C
10.80
20.033
15.682
23.191
A
N9
DG
2
ATOM
A
N9
DG
1
2
1.00
1
N
10.10
20.708
16.834
23.337
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
10.30
19.846
17.861
23.386
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
8.80
18.621
17.380
23.191
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
8.70
17.356
17.985
23.243
A
C6
DG
2
ATOM
A
C6
DG
1
2
1.00
1
C
8.80
17.307
19.281
23.346
A
O6
DG
2
ATOM
A
O6
DG
1
2
1.00
1
O
7.90
16.265
17.230
23.006
A
N1
DG
2
ATOM
A
N1
DG
1
2
1.00
1
N
7.70
16.477
15.883
22.877
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
7.30
15.437
15.208
22.809
A
N2
DG
2
ATOM
A
N2
DG
1
2
1.00
1
N
8.50
17.657
15.151
22.948
A
N3
DG
2
ATOM
A
N3
DG
1
2
1.00
1
N
9.90
18.675
15.991
23.075
A
C4
DG
2
ATOM
A
C4
DG
1
2
1.00
1
C
20.00
18.291
10.060
23.832
A
P
DU
3
ATOM
A
P
DU
1
3
1.00
1
P
21.00
19.131
8.888
23.992
A
OP1
DU
3
ATOM
A
OP1
DU
1
3
1.00
1
O
19.60
17.327
10.187
22.715
A
OP2
DU
3
ATOM
A
OP2
DU
1
3
1.00
1
O
18.70
17.416
10.805
25.003
A
O5'
DU
3
ATOM
A
O5'
DU
1
3
1.00
1
O
16.60
17.440
10.198
26.268
A
C5'
DU
3
ATOM
A
C5'
DU
1
3
1.00
1
C
14.30
15.991
10.718
26.593
A
C4'
DU
3
ATOM
A
C4'
DU
1
3
1.00
1
C
11.90
16.219
11.965
27.099
A
O4'
DU
3
ATOM
A
O4'
DU
1
3
1.00
1
O
14.40
14.979
10.990
25.432
A
C3'
DU
3
ATOM
A
C3'
DU
1
3
1.00
1
C
15.10
13.683
10.802
25.629
A
O3'
DU
3
ATOM
A
O3'
DU
1
3
1.00
1
O
12.60
14.960
12.477
25.279
A
C2'
DU
3
ATOM
A
C2'
DU
1
3
1.00
1
C
9.00
15.359
12.967
26.685
A
C1'
DU
3
ATOM
A
C1'
DU
1
3
1.00
1
C
6.60
16.146
14.257
26.591
A
N1
DU
3
ATOM
A
N1
DU
1
3
1.00
1
N
5.60
15.388
15.398
26.427
A
C2
DU
3
ATOM
A
C2
DU
1
3
1.00
1
C
6.00
14.163
15.370
26.455
A
O2
DU
3
ATOM
A
O2
DU
1
3
1.00
1
O
5.40
16.052
16.630
26.385
A
N3
DU
3
ATOM
A
N3
DU
1
3
1.00
1
N
5.30
17.344
16.753
26.497
A
C4
DU
3
ATOM
A
C4
DU
1
3
1.00
1
C
7.30
17.917
17.871
26.551
A
O4
DU
3
ATOM
A
O4
DU
1
3
1.00
1
O
6.60
18.126
15.526
26.706
A
C5
DU
3
ATOM
A
C5
DU
1
3
1.00
1
C
4.50
17.459
14.375
26.722
A
C6
DU
3
ATOM
A
C6
DU
1
3
1.00
1
C
17.60
13.070
9.317
25.499
A
P
DA
4
ATOM
A
P
DA
1
4
1.00
1
P
17.60
13.738
8.502
24.527
A
OP1
DA
4
ATOM
A
OP1
DA
1
4
1.00
1
O
17.80
11.592
9.488
25.487
A
OP2
DA
4
ATOM
A
OP2
DA
1
4
1.00
1
O
16.30
13.589
8.469
26.873
A
O5'
DA
4
ATOM
A
O5'
DA
1
4
1.00
1
O
13.30
13.249
8.872
28.234
A
C5'
DA
4
ATOM
A
C5'
DA
1
4
1.00
1
C
12.00
14.166
7.962
29.126
A
C4'
DA
4
ATOM
A
C4'
DA
1
4
1.00
1
C
10.10
15.450
8.151
28.837
A
O4'
DA
4
ATOM
A
O4'
DA
1
4
1.00
1
O
13.10
14.205
7.944
30.687
A
C3'
DA
4
ATOM
A
C3'
DA
1
4
1.00
1
C
16.20
13.279
6.899
31.178
A
O3'
DA
4
ATOM
A
O3'
DA
1
4
1.00
1
O
11.90
15.619
7.625
31.077
A
C2'
DA
4
ATOM
A
C2'
DA
1
4
1.00
1
C
9.70
16.469
7.957
29.811
A
C1'
DA
4
ATOM
A
C1'
DA
1
4
1.00
1
C
9.30
17.170
9.163
29.866
A
N9
DA
4
ATOM
A
N9
DA
1
4
1.00
1
N
9.60
18.452
9.335
29.714
A
C8
DA
4
ATOM
A
C8
DA
1
4
1.00
1
C
7.90
18.944
10.577
29.788
A
N7
DA
4
ATOM
A
N7
DA
1
4
1.00
1
N
7.60
17.786
11.265
29.984
A
C5
DA
4
ATOM
A
C5
DA
1
4
1.00
1
C
8.40
17.572
12.655
30.111
A
C6
DA
4
ATOM
A
C6
DA
1
4
1.00
1
C
8.30
18.647
13.484
30.002
A
N6
DA
4
ATOM
A
N6
DA
1
4
1.00
1
N
8.30
16.279
13.080
30.238
A
N1
DA
4
ATOM
A
N1
DA
1
4
1.00
1
N
7.40
15.265
12.214
30.261
A
C2
DA
4
ATOM
A
C2
DA
1
4
1.00
1
C
7.60
15.394
10.865
30.129
A
N3
DA
4
ATOM
A
N3
DA
1
4
1.00
1
N
8.10
16.658
10.485
30.029
A
C4
DA
4
ATOM
A
C4
DA
1
4
1.00
1
C
5.70
14.216
11.917
33.774
A
N1
5CM
5
HETATM
A
N1
5CM
1
5
1.00
1
N
4.20
14.804
13.191
33.694
A
C2
5CM
5
HETATM
A
C2
5CM
1
5
1.00
1
C
4.00
16.106
13.247
33.655
A
N3
5CM
5
HETATM
A
N3
5CM
1
5
1.00
1
N
4.00
16.984
12.135
33.624
A
C4
5CM
5
HETATM
A
C4
5CM
1
5
1.00
1
C
5.30
16.340
10.889
33.738
A
C5
5CM
5
HETATM
A
C5
5CM
1
5
1.00
1
C
6.50
17.177
9.609
33.755
A
C5A
5CM
5
HETATM
A
C5A
5CM
1
5
1.00
1
C
5.60
15.006
10.818
33.785
A
C6
5CM
5
HETATM
A
C6
5CM
1
5
1.00
1
C
5.40
14.122
14.178
33.731
A
O2
5CM
5
HETATM
A
O2
5CM
1
5
1.00
1
O
5.30
18.287
12.295
33.642
A
N4
5CM
5
HETATM
A
N4
5CM
1
5
1.00
1
N
6.40
12.712
11.904
33.825
A
C1'
5CM
5
HETATM
A
C1'
5CM
1
5
1.00
1
C
8.80
11.962
11.849
32.491
A
C2'
5CM
5
HETATM
A
C2'
5CM
1
5
1.00
1
C
11.90
10.675
11.216
32.851
A
C3'
5CM
5
HETATM
A
C3'
5CM
1
5
1.00
1
C
10.20
10.991
10.328
34.095
A
C4'
5CM
5
HETATM
A
C4'
5CM
1
5
1.00
1
C
8.20
12.312
10.697
34.345
A
O4'
5CM
5
HETATM
A
O4'
5CM
1
5
1.00
1
O
14.50
9.762
12.317
33.217
A
O3'
5CM
5
HETATM
A
O3'
5CM
1
5
1.00
1
O
14.30
11.010
8.844
33.782
A
C5'
5CM
5
HETATM
A
C5'
5CM
1
5
1.00
1
C
17.50
12.231
8.462
33.247
A
O5'
5CM
5
HETATM
A
O5'
5CM
1
5
1.00
1
O
19.50
12.595
7.041
32.533
A
P
5CM
5
HETATM
A
P
5CM
1
5
1.00
1
P
19.40
13.608
6.795
33.576
A
OP1
5CM
5
HETATM
A
OP1
5CM
1
5
1.00
1
O
18.20
11.337
6.258
32.293
A
OP2
5CM
5
HETATM
A
OP2
5CM
1
5
1.00
1
O
17.10
8.235
11.971
32.999
A
P
DG
6
ATOM
A
P
DG
1
6
1.00
1
P
18.40
8.354
10.859
32.131
A
OP1
DG
6
ATOM
A
OP1
DG
1
6
1.00
1
O
18.80
7.457
13.235
32.846
A
OP2
DG
6
ATOM
A
OP2
DG
1
6
1.00
1
O
17.20
7.608
11.097
34.259
A
O5'
DG
6
ATOM
A
O5'
DG
1
6
1.00
1
O
15.80
7.613
11.592
35.652
A
C5'
DG
6
ATOM
A
C5'
DG
1
6
1.00
1
C
14.20
7.133
10.323
36.449
A
C4'
DG
6
ATOM
A
C4'
DG
1
6
1.00
1
C
14.30
8.054
9.261
36.290
A
O4'
DG
6
ATOM
A
O4'
DG
1
6
1.00
1
O
14.60
7.067
10.678
37.915
A
C3'
DG
6
ATOM
A
C3'
DG
1
6
1.00
1
C
16.80
5.833
10.005
38.375
A
O3'
DG
6
ATOM
A
O3'
DG
1
6
1.00
1
O
13.60
8.331
10.096
38.411
A
C2'
DG
6
ATOM
A
C2'
DG
1
6
1.00
1
C
10.00
8.726
8.935
37.459
A
C1'
DG
6
ATOM
A
C1'
DG
1
6
1.00
1
C
7.90
10.035
8.869
37.452
A
N9
DG
6
ATOM
A
N9
DG
1
6
1.00
1
N
7.50
10.684
7.676
37.480
A
C8
DG
6
ATOM
A
C8
DG
1
6
1.00
1
C
5.80
12.018
7.770
37.470
A
N7
DG
6
ATOM
A
N7
DG
1
6
1.00
1
N
5.50
12.240
9.139
37.520
A
C5
DG
6
ATOM
A
C5
DG
1
6
1.00
1
C
5.10
13.472
9.867
37.525
A
C6
DG
6
ATOM
A
C6
DG
1
6
1.00
1
C
6.20
14.651
9.468
37.403
A
O6
DG
6
ATOM
A
O6
DG
1
6
1.00
1
O
4.30
13.383
11.207
37.457
A
N1
DG
6
ATOM
A
N1
DG
1
6
1.00
1
N
2.60
12.173
11.684
37.481
A
C2
DG
6
ATOM
A
C2
DG
1
6
1.00
1
C
4.90
11.976
12.909
37.483
A
N2
DG
6
ATOM
A
N2
DG
1
6
1.00
1
N
6.30
10.957
11.156
37.406
A
N3
DG
6
ATOM
A
N3
DG
1
6
1.00
1
N
5.60
11.064
9.824
37.401
A
C4
DG
6
ATOM
A
C4
DG
1
6
1.00
1
C
6.90
16.602
14.988
36.817
B
N1
5CM
7
HETATM
B
N1
5CM
1
1
1.00
1
N
6.20
15.572
14.049
36.972
B
C2
5CM
7
HETATM
B
C2
5CM
1
1
1.00
1
C
6.80
15.889
12.726
37.068
B
N3
5CM
7
HETATM
B
N3
5CM
1
1
1.00
1
N
5.30
17.195
12.286
37.068
B
C4
5CM
7
HETATM
B
C4
5CM
1
1
1.00
1
C
5.70
18.256
13.202
37.047
B
C5
5CM
7
HETATM
B
C5
5CM
1
1
1.00
1
C
5.30
19.634
12.696
37.011
B
C5A
5CM
7
HETATM
B
C5A
5CM
1
1
1.00
1
C
6.90
17.894
14.504
36.880
B
C6
5CM
7
HETATM
B
C6
5CM
1
1
1.00
1
C
8.40
14.422
14.435
36.994
B
O2
5CM
7
HETATM
B
O2
5CM
1
1
1.00
1
O
6.10
17.294
10.905
37.198
B
N4
5CM
7
HETATM
B
N4
5CM
1
1
1.00
1
N
8.50
16.191
16.454
36.762
B
C1'
5CM
7
HETATM
B
C1'
5CM
1
1
1.00
1
C
9.90
16.536
17.064
38.236
B
C2'
5CM
7
HETATM
B
C2'
5CM
1
1
1.00
1
C
10.80
16.717
18.493
37.780
B
C3'
5CM
7
HETATM
B
C3'
5CM
1
1
1.00
1
C
11.50
17.539
18.230
36.414
B
C4'
5CM
7
HETATM
B
C4'
5CM
1
1
1.00
1
C
9.80
17.523
16.845
36.441
B
O4'
5CM
7
HETATM
B
O4'
5CM
1
1
1.00
1
O
11.80
15.576
19.095
37.514
B
O3'
5CM
7
HETATM
B
O3'
5CM
1
1
1.00
1
O
12.70
18.698
19.029
36.393
B
C5'
5CM
7
HETATM
B
C5'
5CM
1
1
1.00
1
C
16.00
19.955
18.679
36.457
B
O5'
5CM
7
HETATM
B
O5'
5CM
1
1
1.00
1
O
13.10
15.245
20.642
37.681
B
P
DG
8
ATOM
B
P
DG
1
2
1.00
1
P
13.50
16.093
21.286
38.737
B
OP1
DG
8
ATOM
B
OP1
DG
1
2
1.00
1
O
14.30
13.903
20.776
37.680
B
OP2
DG
8
ATOM
B
OP2
DG
1
2
1.00
1
O
12.60
15.815
21.307
36.193
B
O5'
DG
8
ATOM
B
O5'
DG
1
2
1.00
1
O
10.80
15.296
20.671
34.988
B
C5'
DG
8
ATOM
B
C5'
DG
1
2
1.00
1
C
10.60
16.239
21.535
34.095
B
C4'
DG
8
ATOM
B
C4'
DG
1
2
1.00
1
C
9.00
17.656
21.231
34.230
B
O4'
DG
8
ATOM
B
O4'
DG
1
2
1.00
1
O
10.70
15.839
21.341
32.606
B
C3'
DG
8
ATOM
B
C3'
DG
1
2
1.00
1
C
13.00
15.071
22.599
32.230
B
O3'
DG
8
ATOM
B
O3'
DG
1
2
1.00
1
O
8.40
17.146
21.246
31.955
B
C2'
DG
8
ATOM
B
C2'
DG
1
2
1.00
1
C
7.00
18.269
20.937
32.911
B
C1'
DG
8
ATOM
B
C1'
DG
1
2
1.00
1
C
5.60
18.598
19.566
33.004
B
N9
DG
8
ATOM
B
N9
DG
1
2
1.00
1
N
3.60
19.870
19.198
32.972
B
C8
DG
8
ATOM
B
C8
DG
1
2
1.00
1
C
5.30
19.996
17.908
33.004
B
N7
DG
8
ATOM
B
N7
DG
1
2
1.00
1
N
5.10
18.772
17.379
33.087
B
C5
DG
8
ATOM
B
C5
DG
1
2
1.00
1
C
4.10
18.271
16.011
33.216
B
C6
DG
8
ATOM
B
C6
DG
1
2
1.00
1
C
6.30
19.138
15.043
33.239
B
O6
DG
8
ATOM
B
O6
DG
1
2
1.00
1
O
4.20
16.994
15.896
33.306
B
N1
DG
8
ATOM
B
N1
DG
1
2
1.00
1
N
2.50
16.131
16.894
33.222
B
C2
DG
8
ATOM
B
C2
DG
1
2
1.00
1
C
2.30
14.949
16.944
33.308
B
N2
DG
8
ATOM
B
N2
DG
1
2
1.00
1
N
4.70
16.526
18.198
33.050
B
N3
DG
8
ATOM
B
N3
DG
1
2
1.00
1
N
4.30
17.843
18.389
33.061
B
C4
DG
8
ATOM
B
C4
DG
1
2
1.00
1
C
14.90
13.547
22.519
31.994
B
P
DU
9
ATOM
B
P
DU
1
3
1.00
1
P
16.10
12.840
23.844
31.798
B
OP1
DU
9
ATOM
B
OP1
DU
1
3
1.00
1
O
16.40
12.972
21.503
32.835
B
OP2
DU
9
ATOM
B
OP2
DU
1
3
1.00
1
O
13.50
13.372
21.727
30.460
B
O5'
DU
9
ATOM
B
O5'
DU
1
3
1.00
1
O
11.40
12.220
21.658
29.654
B
C5'
DU
9
ATOM
B
C5'
DU
1
3
1.00
1
C
9.10
11.828
20.176
29.319
B
C4'
DU
9
ATOM
B
C4'
DU
1
3
1.00
1
C
7.60
12.870
19.345
29.022
B
O4'
DU
9
ATOM
B
O4'
DU
1
3
1.00
1
O
10.60
11.306
19.513
30.613
B
C3'
DU
9
ATOM
B
C3'
DU
1
3
1.00
1
C
12.00
10.165
18.762
30.483
B
O3'
DU
9
ATOM
B
O3'
DU
1
3
1.00
1
O
9.60
12.259
18.475
30.992
B
C2'
DU
9
ATOM
B
C2'
DU
1
3
1.00
1
C
6.80
12.924
18.098
29.710
B
C1'
DU
9
ATOM
B
C1'
DU
1
3
1.00
1
C
4.70
14.382
17.717
29.772
B
N1
DU
9
ATOM
B
N1
DU
1
3
1.00
1
N
4.60
14.683
16.367
29.823
B
C2
DU
9
ATOM
B
C2
DU
1
3
1.00
1
C
6.20
13.824
15.512
29.826
B
O2
DU
9
ATOM
B
O2
DU
1
3
1.00
1
O
4.30
15.950
16.059
29.797
B
N3
DU
9
ATOM
B
N3
DU
1
3
1.00
1
N
4.20
17.083
16.873
29.790
B
C4
DU
9
ATOM
B
C4
DU
1
3
1.00
1
C
4.10
18.191
16.351
29.801
B
O4
DU
9
ATOM
B
O4
DU
1
3
1.00
1
O
4.90
16.696
18.204
29.722
B
C5
DU
9
ATOM
B
C5
DU
1
3
1.00
1
C
3.80
15.431
18.521
29.625
B
C6
DU
9
ATOM
B
C6
DU
1
3
1.00
1
C
12.80
8.718
19.310
30.653
B
P
DA
10
ATOM
B
P
DA
1
4
1.00
1
P
13.90
8.562
20.308
31.745
B
OP1
DA
10
ATOM
B
OP1
DA
1
4
1.00
1
O
12.40
7.851
18.213
30.369
B
OP2
DA
10
ATOM
B
OP2
DA
1
4
1.00
1
O
13.00
8.352
20.043
29.149
B
O5'
DA
10
ATOM
B
O5'
DA
1
4
1.00
1
O
12.00
8.838
19.433
28.055
B
C5'
DA
10
ATOM
B
C5'
DA
1
4
1.00
1
C
11.20
8.580
20.612
27.015
B
C4'
DA
10
ATOM
B
C4'
DA
1
4
1.00
1
C
11.10
9.625
21.544
27.147
B
O4'
DA
10
ATOM
B
O4'
DA
1
4
1.00
1
O
12.50
8.569
20.353
25.492
B
C3'
DA
10
ATOM
B
C3'
DA
1
4
1.00
1
C
15.30
7.332
20.794
24.938
B
O3'
DA
10
ATOM
B
O3'
DA
1
4
1.00
1
O
10.20
9.595
21.246
24.849
B
C2'
DA
10
ATOM
B
C2'
DA
1
4
1.00
1
C
8.00
10.265
22.147
25.907
B
C1'
DA
10
ATOM
B
C1'
DA
1
4
1.00
1
C
6.30
11.611
21.956
25.965
B
N9
DA
10
ATOM
B
N9
DA
1
4
1.00
1
N
6.40
12.539
22.899
26.140
B
C8
DA
10
ATOM
B
C8
DA
1
4
1.00
1
C
6.10
13.801
22.464
26.101
B
N7
DA
10
ATOM
B
N7
DA
1
4
1.00
1
N
6.30
13.732
21.130
26.013
B
C5
DA
10
ATOM
B
C5
DA
1
4
1.00
1
C
7.00
14.729
20.123
26.155
B
C6
DA
10
ATOM
B
C6
DA
1
4
1.00
1
C
6.70
16.110
20.154
26.288
B
N6
DA
10
ATOM
B
N6
DA
1
4
1.00
1
N
5.80
14.318
18.795
26.061
B
N1
DA
10
ATOM
B
N1
DA
1
4
1.00
1
N
5.60
12.988
18.675
26.021
B
C2
DA
10
ATOM
B
C2
DA
1
4
1.00
1
C
6.50
11.949
19.468
25.934
B
N3
DA
10
ATOM
B
N3
DA
1
4
1.00
1
N
6.70
12.379
20.761
25.980
B
C4
DA
10
ATOM
B
C4
DA
1
4
1.00
1
C
7.30
11.500
18.212
22.102
B
N1
5CM
11
HETATM
B
N1
5CM
1
5
1.00
1
N
7.10
12.726
17.726
22.313
B
C2
5CM
11
HETATM
B
C2
5CM
1
5
1.00
1
C
7.30
13.836
18.552
22.354
B
N3
5CM
11
HETATM
B
N3
5CM
1
5
1.00
1
N
5.90
13.586
19.953
22.208
B
C4
5CM
11
HETATM
B
C4
5CM
1
5
1.00
1
C
5.60
12.266
20.406
22.123
B
C5
5CM
11
HETATM
B
C5
5CM
1
5
1.00
1
C
6.90
11.940
21.863
21.956
B
C5A
5CM
11
HETATM
B
C5A
5CM
1
5
1.00
1
C
6.50
11.244
19.588
21.989
B
C6
5CM
11
HETATM
B
C6
5CM
1
5
1.00
1
C
7.60
12.921
16.559
22.434
B
O2
5CM
11
HETATM
B
O2
5CM
1
5
1.00
1
O
5.60
14.785
20.605
22.345
B
N4
5CM
11
HETATM
B
N4
5CM
1
5
1.00
1
N
8.70
10.391
17.300
22.033
B
C1'
5CM
11
HETATM
B
C1'
5CM
1
5
1.00
1
C
11.30
9.809
16.738
23.312
B
C2'
5CM
11
HETATM
B
C2'
5CM
1
5
1.00
1
C
13.00
8.466
16.412
22.926
B
C3'
5CM
11
HETATM
B
C3'
5CM
1
5
1.00
1
C
11.80
8.099
17.283
21.642
B
C4'
5CM
11
HETATM
B
C4'
5CM
1
5
1.00
1
C
10.70
9.252
18.145
21.484
B
O4'
5CM
11
HETATM
B
O4'
5CM
1
5
1.00
1
O
13.60
8.485
15.044
22.538
B
O3'
5CM
11
HETATM
B
O3'
5CM
1
5
1.00
1
O
14.50
6.887
18.123
21.836
B
C5'
5CM
11
HETATM
B
C5'
5CM
1
5
1.00
1
C
17.30
7.593
19.065
22.687
B
O5'
5CM
11
HETATM
B
O5'
5CM
1
5
1.00
1
O
20.80
6.719
19.763
23.942
B
P
5CM
11
HETATM
B
P
5CM
1
5
1.00
1
P
19.50
5.697
20.579
23.061
B
OP1
5CM
11
HETATM
B
OP1
5CM
1
5
1.00
1
O
18.60
6.248
18.630
24.701
B
OP2
5CM
11
HETATM
B
OP2
5CM
1
5
1.00
1
O
17.70
7.130
14.196
22.579
B
P
DG
12
ATOM
B
P
DG
1
6
1.00
1
P
18.60
6.347
14.748
23.777
B
OP1
DG
12
ATOM
B
OP1
DG
1
6
1.00
1
O
16.40
7.799
13.037
22.336
B
OP2
DG
12
ATOM
B
OP2
DG
1
6
1.00
1
O
16.90
6.091
14.481
21.423
B
O5'
DG
12
ATOM
B
O5'
DG
1
6
1.00
1
O
16.10
6.357
14.053
20.038
B
C5'
DG
12
ATOM
B
C5'
DG
1
6
1.00
1
C
14.00
5.180
14.733
19.316
B
C4'
DG
12
ATOM
B
C4'
DG
1
6
1.00
1
C
13.30
5.194
16.183
19.526
B
O4'
DG
12
ATOM
B
O4'
DG
1
6
1.00
1
O
13.70
5.251
14.482
17.641
B
C3'
DG
12
ATOM
B
C3'
DG
1
6
1.00
1
C
15.10
3.981
14.300
17.211
B
O3'
DG
12
ATOM
B
O3'
DG
1
6
1.00
1
O
12.10
6.007
15.713
17.369
B
C2'
DG
12
ATOM
B
C2'
DG
1
6
1.00
1
C
10.20
5.239
16.822
18.226
B
C1'
DG
12
ATOM
B
C1'
DG
1
6
1.00
1
C
8.70
6.093
18.004
18.316
B
N9
DG
12
ATOM
B
N9
DG
1
6
1.00
1
N
6.30
5.693
19.268
18.419
B
C8
DG
12
ATOM
B
C8
DG
1
6
1.00
1
C
7.70
6.867
20.004
18.427
B
N7
DG
12
ATOM
B
N7
DG
1
6
1.00
1
N
6.70
7.927
19.173
18.403
B
C5
DG
12
ATOM
B
C5
DG
1
6
1.00
1
C
6.50
9.276
19.451
18.354
B
C6
DG
12
ATOM
B
C6
DG
1
6
1.00
1
C
7.10
9.881
20.568
18.420
B
O6
DG
12
ATOM
B
O6
DG
1
6
1.00
1
O
6.90
10.196
18.465
18.322
B
N1
DG
12
ATOM
B
N1
DG
1
6
1.00
1
N
6.70
9.580
17.182
18.249
B
C2
DG
12
ATOM
B
C2
DG
1
6
1.00
1
C
7.50
10.523
16.366
18.146
B
N2
DG
12
ATOM
B
N2
DG
1
6
1.00
1
N
5.80
8.286
16.803
18.198
B
N3
DG
12
ATOM
B
N3
DG
1
6
1.00
1
N
6.30
7.519
17.873
18.316
B
C4
DG
12
ATOM
B
C4
DG
1
6
1.00
1
C
67.40
20.536
19.914
24.148
A
CU
CU
7
HETATM
C
CU
CU
2
0.16
1
CU
30.20
13.470
6.199
37.312
A
CU
CU
8
HETATM
D
CU
CU
2
0.33
1
CU
63.40
22.262
17.235
32.753
B
CU
CU
13
HETATM
E
CU
CU
2
0.14
1
CU
27.90
6.359
22.063
18.525
B
CU
CUL
14
HETATM
F
CU
CUL
3
0.18
1
CU
34.70
6.529
22.391
21.610
B
CL1
CUL
14
HETATM
F
CL1
CUL
3
1.00
1
CL
27.30
7.073
22.247
15.938
B
CL2
CUL
14
HETATM
F
CL2
CUL
3
1.00
1
CL
65.70
18.971
21.317
24.611
A
O
HOH
13
HETATM
G
O
HOH
4
1.00
1
O
64.90
22.125
18.660
23.970
A
O
HOH
14
HETATM
G
O
HOH
4
1.00
1
O
65.10
20.614
20.268
22.109
A
O
HOH
15
HETATM
G
O
HOH
4
1.00
1
O
66.40
20.471
19.076
26.187
A
O
HOH
16
HETATM
G
O
HOH
4
1.00
1
O
66.00
21.625
21.544
24.936
A
O
HOH
17
HETATM
G
O
HOH
4
1.00
1
O
21.00
15.017
4.489
37.397
A
O
HOH
18
HETATM
G
O
HOH
4
1.00
1
O
32.80
12.484
5.153
35.986
A
O
HOH
19
HETATM
G
O
HOH
4
1.00
1
O
35.40
14.667
7.015
38.817
A
O
HOH
20
HETATM
G
O
HOH
4
1.00
1
O
23.30
12.654
5.061
38.755
A
O
HOH
21
HETATM
G
O
HOH
4
1.00
1
O
27.20
14.797
7.134
36.431
A
O
HOH
22
HETATM
G
O
HOH
4
1.00
1
O
19.70
19.141
20.706
20.012
A
O
HOH
29
HETATM
G
O
HOH
4
1.00
1
O
22.10
20.211
6.764
22.670
A
O
HOH
31
HETATM
G
O
HOH
4
1.00
1
O
22.10
20.591
10.688
33.822
A
O
HOH
35
HETATM
G
O
HOH
4
1.00
1
O
49.30
10.002
10.526
29.477
A
O
HOH
36
HETATM
G
O
HOH
4
1.00
1
O
27.60
10.584
7.624
31.119
A
O
HOH
37
HETATM
G
O
HOH
4
1.00
1
O
39.00
7.430
10.455
27.478
A
O
HOH
38
HETATM
G
O
HOH
4
1.00
1
O
22.40
22.250
17.874
27.469
A
O
HOH
39
HETATM
G
O
HOH
4
1.00
1
O
31.70
22.053
8.403
30.990
A
O
HOH
41
HETATM
G
O
HOH
4
1.00
1
O
28.80
22.336
12.837
34.267
A
O
HOH
44
HETATM
G
O
HOH
4
1.00
1
O
40.70
21.520
15.409
26.779
A
O
HOH
45
HETATM
G
O
HOH
4
1.00
1
O
37.90
8.566
16.788
37.935
A
O
HOH
46
HETATM
G
O
HOH
4
1.00
1
O
13.30
9.492
14.571
36.587
A
O
HOH
47
HETATM
G
O
HOH
4
1.00
1
O
33.00
9.402
7.480
27.326
A
O
HOH
48
HETATM
G
O
HOH
4
1.00
1
O
19.50
8.385
2.612
31.738
A
O
HOH
49
HETATM
G
O
HOH
4
1.00
1
O
22.20
6.406
6.975
31.600
A
O
HOH
51
HETATM
G
O
HOH
4
1.00
1
O
12.00
15.004
12.452
21.200
A
O
HOH
55
HETATM
G
O
HOH
4
1.00
1
O
34.30
6.744
13.767
37.183
A
O
HOH
56
HETATM
G
O
HOH
4
1.00
1
O
22.20
12.204
5.492
25.212
A
O
HOH
57
HETATM
G
O
HOH
4
1.00
1
O
53.00
14.239
4.498
27.197
A
O
HOH
60
HETATM
G
O
HOH
4
1.00
1
O
33.70
22.012
9.104
22.558
A
O
HOH
61
HETATM
G
O
HOH
4
1.00
1
O
30.80
9.384
5.648
31.965
A
O
HOH
67
HETATM
G
O
HOH
4
1.00
1
O
33.10
20.332
11.195
26.895
A
O
HOH
72
HETATM
G
O
HOH
4
1.00
1
O
47.80
4.890
10.250
25.488
A
O
HOH
74
HETATM
G
O
HOH
4
1.00
1
O
22.90
9.245
10.923
25.278
A
O
HOH
75
HETATM
G
O
HOH
4
1.00
1
O
21.60
11.384
14.972
33.764
A
O
HOH
76
HETATM
G
O
HOH
4
1.00
1
O
52.00
12.823
13.792
19.478
A
O
HOH
82
HETATM
G
O
HOH
4
1.00
1
O
30.70
21.460
10.987
30.826
A
O
HOH
85
HETATM
G
O
HOH
4
1.00
1
O
40.60
5.759
9.229
28.319
A
O
HOH
89
HETATM
G
O
HOH
4
1.00
1
O
19.80
6.705
5.153
32.126
A
O
HOH
91
HETATM
G
O
HOH
4
1.00
1
O
29.60
8.837
15.510
34.085
A
O
HOH
92
HETATM
G
O
HOH
4
1.00
1
O
31.40
6.596
9.125
33.101
A
O
HOH
93
HETATM
G
O
HOH
4
1.00
1
O
28.80
9.465
3.884
32.664
A
O
HOH
94
HETATM
G
O
HOH
4
1.00
1
O
30.20
9.098
8.770
30.768
A
O
HOH
95
HETATM
G
O
HOH
4
1.00
1
O
19.80
20.448
13.431
26.970
A
O
HOH
97
HETATM
G
O
HOH
4
1.00
1
O
62.70
22.886
18.027
31.035
B
O
HOH
23
HETATM
H
O
HOH
4
1.00
1
O
63.00
21.567
15.443
32.264
B
O
HOH
24
HETATM
H
O
HOH
4
1.00
1
O
65.40
21.926
16.788
34.917
B
O
HOH
25
HETATM
H
O
HOH
4
1.00
1
O
61.40
24.279
16.360
33.016
B
O
HOH
26
HETATM
H
O
HOH
4
1.00
1
O
25.40
8.477
22.840
18.979
B
O
HOH
27
HETATM
H
O
HOH
4
1.00
1
O
19.30
9.857
13.241
19.531
B
O
HOH
28
HETATM
H
O
HOH
4
1.00
1
O
36.70
11.346
16.819
34.387
B
O
HOH
30
HETATM
H
O
HOH
4
1.00
1
O
37.10
6.482
16.782
26.271
B
O
HOH
32
HETATM
H
O
HOH
4
1.00
1
O
32.60
7.161
9.039
20.982
B
O
HOH
33
HETATM
H
O
HOH
4
1.00
1
O
36.00
11.405
14.464
24.410
B
O
HOH
34
HETATM
H
O
HOH
4
1.00
1
O
32.10
9.655
9.198
19.188
B
O
HOH
40
HETATM
H
O
HOH
4
1.00
1
O
40.10
5.481
14.391
29.989
B
O
HOH
42
HETATM
H
O
HOH
4
1.00
1
O
30.90
8.714
11.241
22.260
B
O
HOH
43
HETATM
H
O
HOH
4
1.00
1
O
36.80
9.986
14.795
28.217
B
O
HOH
50
HETATM
H
O
HOH
4
1.00
1
O
20.80
11.587
16.568
36.765
B
O
HOH
52
HETATM
H
O
HOH
4
1.00
1
O
24.70
10.086
19.492
38.087
B
O
HOH
53
HETATM
H
O
HOH
4
1.00
1
O
22.50
7.724
20.577
37.579
B
O
HOH
54
HETATM
H
O
HOH
4
1.00
1
O
25.90
11.623
15.431
18.307
B
O
HOH
58
HETATM
H
O
HOH
4
1.00
1
O
18.70
5.368
13.639
26.253
B
O
HOH
59
HETATM
H
O
HOH
4
1.00
1
O
18.30
9.864
8.724
17.394
B
O
HOH
62
HETATM
H
O
HOH
4
1.00
1
O
23.50
8.193
13.636
25.563
B
O
HOH
63
HETATM
H
O
HOH
4
1.00
1
O
17.80
12.575
18.128
37.624
B
O
HOH
64
HETATM
H
O
HOH
4
1.00
1
O
25.50
22.316
19.152
36.221
B
O
HOH
65
HETATM
H
O
HOH
4
1.00
1
O
15.30
9.917
22.550
32.366
B
O
HOH
66
HETATM
H
O
HOH
4
1.00
1
O
21.20
21.208
15.969
36.297
B
O
HOH
68
HETATM
H
O
HOH
4
1.00
1
O
22.30
12.813
19.174
34.343
B
O
HOH
69
HETATM
H
O
HOH
4
1.00
1
O
23.50
11.759
14.064
22.496
B
O
HOH
70
HETATM
H
O
HOH
4
1.00
1
O
21.80
11.138
12.449
27.914
B
O
HOH
71
HETATM
H
O
HOH
4
1.00
1
O
25.40
6.148
7.036
24.339
B
O
HOH
73
HETATM
H
O
HOH
4
1.00
1
O
32.60
20.176
16.990
29.548
B
O
HOH
77
HETATM
H
O
HOH
4
1.00
1
O
46.50
5.833
6.917
26.592
B
O
HOH
78
HETATM
H
O
HOH
4
1.00
1
O
34.60
7.984
8.749
23.520
B
O
HOH
79
HETATM
H
O
HOH
4
1.00
1
O
22.10
5.894
10.464
20.929
B
O
HOH
80
HETATM
H
O
HOH
4
1.00
1
O
35.60
9.066
22.122
22.554
B
O
HOH
81
HETATM
H
O
HOH
4
1.00
1
O
25.70
11.439
10.675
18.845
B
O
HOH
83
HETATM
H
O
HOH
4
1.00
1
O
30.50
12.304
19.883
39.115
B
O
HOH
84
HETATM
H
O
HOH
4
1.00
1
O
52.40
8.735
17.498
26.908
B
O
HOH
86
HETATM
H
O
HOH
4
1.00
1
O
46.60
7.984
13.749
28.760
B
O
HOH
87
HETATM
H
O
HOH
4
1.00
1
O
25.60
7.497
15.525
29.842
B
O
HOH
88
HETATM
H
O
HOH
4
1.00
1
O
30.80
12.366
14.556
30.567
B
O
HOH
90
HETATM
H
O
HOH
4
1.00
1
O
26.60
3.632
11.562
16.085
B
O
HOH
96
HETATM
H
O
HOH
4
1.00
1
O
43.80
8.204
10.434
19.544
B
O
HOH
98
HETATM
H
O
HOH
4
1.00
1
O
0.056851
0.000000
0.000000
0.000000
0.032701
0.000000
0.000000
0.000000
0.022462
0.00000
0.00000
0.00000
Geierstanger, B.H.
Kagawa, T.F.
Chen, S.-L.
Quigley, G.J.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
17.590
30.580
44.520
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
Cu 2
63.546
COPPER (II) ION
non-polymer
Cl2 Cu
134.452
COPPER (II) CHLORIDE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H13 N2 O8 P
308.182
y
2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
CU
N
39
N
CU
N
40
N
CL
N
41
N
CL
N
42
N
O
N
43
N
P
N
44
N
O
N
45
N
O
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
O
N
50
S
C
N
51
N
O
N
52
N
C
N
53
R
C
Y
54
N
N
Y
55
N
C
Y
56
N
N
Y
57
N
C
Y
58
N
C
N
59
N
N
Y
60
N
N
Y
61
N
C
Y
62
N
N
Y
63
N
C
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
O
N
79
N
P
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
C
N
84
R
C
N
85
N
O
N
86
S
C
N
87
N
O
N
88
N
C
N
89
R
C
Y
90
N
N
Y
91
N
C
Y
92
N
N
Y
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
C
N
98
N
N
N
99
N
N
Y
100
N
C
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
O
N
123
S
C
N
124
N
O
N
125
N
C
N
126
R
C
N
127
N
N
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
H
N
150
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
Y
64
N
sing
Y
65
N
sing
Y
66
N
doub
N
67
N
sing
Y
68
N
sing
Y
69
N
sing
Y
70
N
doub
N
71
N
sing
Y
72
N
doub
N
73
N
sing
N
74
N
sing
Y
75
N
sing
Y
76
N
doub
N
77
N
sing
Y
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
Y
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
266
20185
20191
1939079
Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2.
1991
US
Biochemistry
BICHAW
0033
0006-2960
29
7229
7236
Stabilization of Z-DNA by Demethylation of Thymine Bases: 1.3-Angstroms Single-Crystal Structure of d(m5CGUAm5CG)
1990
10.2210/pdb1d40/pdb
pdb_00001d40
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ROOM TEMPERATURE
1
AREA DETECTOR
ENRAF-NONIUS
x-ray
1
1.0
1823.245
DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3')
2
syn
polymer
63.546
COPPER (II) ION
3
syn
non-polymer
134.452
COPPER (II) CHLORIDE
1
syn
non-polymer
18.015
water
86
nat
water
no
yes
(5CM)(DG)(DU)(DA)(5CM)(DG)
CGUACG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1.64
25.08
VAPOR DIFFUSION
7.00
pH 7.00, VAPOR DIFFUSION
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
WATER
2
MPD
2
WATER
3
CUCL2
3
6.209
1
19
A
1
B
12
1.036
A_5CM1:DG12_B
1
-5.903
-0.335
0.216
-0.110
-3.662
1
19
A
2
B
11
-0.582
A_DG2:5CM11_B
2
8.703
0.482
0.488
-0.146
6.788
1
20
A
3
B
10
-4.165
A_DU3:DA10_B
3
-0.801
-0.114
-0.009
-0.038
-9.424
1
20
A
4
B
9
3.841
A_DA4:DU9_B
4
-1.844
0.282
0.295
-0.127
-0.890
1
19
A
5
B
8
-0.932
A_5CM5:DG8_B
5
-1.791
-0.422
0.193
-0.299
-4.606
1
19
A
6
B
7
-6.065
A_DG6:5CM7_B
6
-1.911
0.557
0.268
-0.035
3.334
-12.378
A
A
1
2
-5.282
B
B
12
11
4.032
1.127
0.218
5.692
AA_5CM1DG2:5CM11DG12_BB
1
2.928
13.728
-11.976
-27.974
5.104
3.277
-46.822
A
A
2
3
3.736
B
B
11
10
3.328
-2.967
-0.123
-0.785
AA_DG2DU3:DA105CM11_BB
2
1.146
1.443
-46.720
1.236
-0.059
5.700
-12.630
A
A
3
4
27.765
B
B
10
9
3.932
-5.683
0.502
5.285
AA_DU3DA4:DU9DA10_BB
3
-5.192
-25.367
-10.021
-13.071
-7.726
3.376
-52.164
A
A
4
5
-1.262
B
B
9
8
3.336
1.109
-0.381
-1.162
AA_DA45CM5:DG8DU9_BB
4
3.682
4.191
-52.032
1.246
-0.183
2.637
-11.599
A
A
5
6
-10.340
B
B
8
7
3.712
2.071
-0.231
5.312
AA_5CM5DG6:5CM7DG8_BB
5
-1.643
-8.201
-11.295
-29.120
-3.392
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1992-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1991-05-07
REL
REL
CU
COPPER (II) ION
CUL
COPPER (II) CHLORIDE
HOH
water
1D41
ZDFB24
PDB
experimental model
G
2
2
CU
CU
7
A
G
6
2
CU
CU
8
A
G
8
2
CU
CU
13
B
G
12
3
CUL
CUL
14
B
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
29
4
HOH
HOH
29
A
HOH
31
4
HOH
HOH
31
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
41
4
HOH
HOH
41
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
51
4
HOH
HOH
51
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
67
4
HOH
HOH
67
A
HOH
72
4
HOH
HOH
72
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
82
4
HOH
HOH
82
A
HOH
85
4
HOH
HOH
85
A
HOH
89
4
HOH
HOH
89
A
HOH
91
4
HOH
HOH
91
A
HOH
92
4
HOH
HOH
92
A
HOH
93
4
HOH
HOH
93
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
97
4
HOH
HOH
97
A
HOH
23
4
HOH
HOH
23
B
HOH
24
4
HOH
HOH
24
B
HOH
25
4
HOH
HOH
25
B
HOH
26
4
HOH
HOH
26
B
HOH
27
4
HOH
HOH
27
B
HOH
28
4
HOH
HOH
28
B
HOH
30
4
HOH
HOH
30
B
HOH
32
4
HOH
HOH
32
B
HOH
33
4
HOH
HOH
33
B
HOH
34
4
HOH
HOH
34
B
HOH
40
4
HOH
HOH
40
B
HOH
42
4
HOH
HOH
42
B
HOH
43
4
HOH
HOH
43
B
HOH
50
4
HOH
HOH
50
B
HOH
52
4
HOH
HOH
52
B
HOH
53
4
HOH
HOH
53
B
HOH
54
4
HOH
HOH
54
B
HOH
58
4
HOH
HOH
58
B
HOH
59
4
HOH
HOH
59
B
HOH
62
4
HOH
HOH
62
B
HOH
63
4
HOH
HOH
63
B
HOH
64
4
HOH
HOH
64
B
HOH
65
4
HOH
HOH
65
B
HOH
66
4
HOH
HOH
66
B
HOH
68
4
HOH
HOH
68
B
HOH
69
4
HOH
HOH
69
B
HOH
70
4
HOH
HOH
70
B
HOH
71
4
HOH
HOH
71
B
HOH
73
4
HOH
HOH
73
B
HOH
77
4
HOH
HOH
77
B
HOH
78
4
HOH
HOH
78
B
HOH
79
4
HOH
HOH
79
B
HOH
80
4
HOH
HOH
80
B
HOH
81
4
HOH
HOH
81
B
HOH
83
4
HOH
HOH
83
B
HOH
84
4
HOH
HOH
84
B
HOH
86
4
HOH
HOH
86
B
HOH
87
4
HOH
HOH
87
B
HOH
88
4
HOH
HOH
88
B
HOH
90
4
HOH
HOH
90
B
HOH
96
4
HOH
HOH
96
B
HOH
98
4
HOH
HOH
98
B
+C
1
n
1
5CM
1
A
G
2
n
2
DG
2
A
U
3
n
3
DU
3
A
A
4
n
4
DA
4
A
+C
5
n
5
5CM
5
A
G
6
n
6
DG
6
A
+C
7
n
1
5CM
7
B
G
8
n
2
DG
8
B
U
9
n
3
DU
9
B
A
10
n
4
DA
10
B
+C
11
n
5
5CM
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
13
G
O
HOH
1_555
115.8
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
14
G
O
HOH
1_555
69.8
A
HOH
13
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
14
G
O
HOH
1_555
171.8
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
15
G
O
HOH
1_555
80.6
A
HOH
13
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
15
G
O
HOH
1_555
97.3
A
HOH
14
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
15
G
O
HOH
1_555
89.4
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
16
G
O
HOH
1_555
87.6
A
HOH
13
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
16
G
O
HOH
1_555
91.6
A
HOH
14
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
16
G
O
HOH
1_555
82.5
A
HOH
15
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
16
G
O
HOH
1_555
167.5
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
165.6
A
HOH
13
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
78.0
A
HOH
14
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
96.1
A
HOH
15
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
102.5
A
HOH
16
G
O
HOH
1_555
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
87.9
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
18
G
O
HOH
1_555
173.6
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
19
G
O
HOH
1_555
95.8
A
HOH
18
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
19
G
O
HOH
1_555
88.1
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
20
G
O
HOH
1_555
92.8
A
HOH
18
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
20
G
O
HOH
1_555
83.0
A
HOH
19
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
20
G
O
HOH
1_555
170.5
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
21
G
O
HOH
1_555
95.0
A
HOH
18
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
21
G
O
HOH
1_555
80.0
A
HOH
19
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
21
G
O
HOH
1_555
88.8
A
HOH
20
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
21
G
O
HOH
1_555
86.4
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
98.7
A
HOH
18
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
84.9
A
HOH
19
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
108.0
A
HOH
20
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
74.6
A
HOH
21
G
O
HOH
1_555
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
157.0
B
DG
8
B
N7
DG
2
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
23
H
O
HOH
1_555
106.1
B
DG
8
B
N7
DG
2
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
24
H
O
HOH
1_555
87.0
B
HOH
23
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
24
H
O
HOH
1_555
104.9
B
DG
8
B
N7
DG
2
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
25
H
O
HOH
1_555
79.1
B
HOH
23
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
25
H
O
HOH
1_555
164.1
B
HOH
24
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
25
H
O
HOH
1_555
90.3
B
DG
8
B
N7
DG
2
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
26
H
O
HOH
1_555
165.4
B
HOH
23
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
26
H
O
HOH
1_555
88.5
B
HOH
24
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
26
H
O
HOH
1_555
89.5
B
HOH
25
H
O
HOH
1_555
B
CU
13
E
CU
CU
1_555
B
HOH
26
H
O
HOH
1_555
86.7
B
DA
10
B
N7
DA
4
1_555
B
CUL
14
F
CU
CUL
4_566
B
CUL
14
F
CL1
CUL
4_566
91.1
B
DA
10
B
N7
DA
4
1_555
B
CUL
14
F
CU
CUL
4_566
B
CUL
14
F
CL2
CUL
4_566
95.0
B
CUL
14
F
CL1
CUL
4_566
B
CUL
14
F
CU
CUL
4_566
B
CUL
14
F
CL2
CUL
4_566
158.9
B
DA
10
B
N7
DA
4
1_555
B
CUL
14
F
CU
CUL
4_566
B
DG
12
B
N7
DG
6
1_555
46.7
B
CUL
14
F
CL1
CUL
4_566
B
CUL
14
F
CU
CUL
4_566
B
DG
12
B
N7
DG
6
1_555
51.0
B
CUL
14
F
CL2
CUL
4_566
B
CUL
14
F
CU
CUL
4_566
B
DG
12
B
N7
DG
6
1_555
141.1
B
DA
10
B
N7
DA
4
1_555
B
CUL
14
F
CU
CUL
4_566
B
HOH
27
H
O
HOH
1_555
58.9
B
CUL
14
F
CL1
CUL
4_566
B
CUL
14
F
CU
CUL
4_566
B
HOH
27
H
O
HOH
1_555
46.5
B
CUL
14
F
CL2
CUL
4_566
B
CUL
14
F
CU
CUL
4_566
B
HOH
27
H
O
HOH
1_555
150.3
B
DG
12
B
N7
DG
6
1_555
B
CUL
14
F
CU
CUL
4_566
B
HOH
27
H
O
HOH
1_555
13.6
A
5CM
1
A
5CM
1
DC
A
5CM
5
A
5CM
5
DC
B
5CM
7
B
5CM
1
DC
B
5CM
11
B
5CM
5
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
B
N2
O
DG
HOH
12
58
1.45
1
B
B
O
O
HOH
HOH
25
68
1.76
1
B
B
O
O
HOH
HOH
40
62
1.87
1
B
B
O2
O
DU
HOH
9
90
1.89
1
A
A
O
O
HOH
HOH
67
94
1.90
1
B
B
O
O
HOH
HOH
33
80
1.91
1
A
A
O
O
HOH
HOH
49
94
1.91
1
A
A
O
O
HOH
HOH
37
95
1.91
1
A
A
O
O
HOH
HOH
51
91
1.92
1
B
B
O
O
HOH
HOH
40
98
1.94
1
A
B
O
O
HOH
HOH
76
30
1.95
1
A
A
OP2
O
5CM
HOH
5
37
1.95
1
B
B
O
O
HOH
HOH
34
70
1.99
1
B
B
OP2
O
DG
HOH
12
43
2.02
1
B
B
O
O
HOH
HOH
52
64
2.04
1
A
A
OP2
O
5CM
HOH
5
67
2.07
1
B
B
O4
O
DU
HOH
9
77
2.10
1
A
B
O2
O
5CM
HOH
1
58
2.11
1
B
B
O
O
HOH
HOH
87
88
2.14
1
13.08
1.50
119.60
132.68
A
A
A
OP1
P
OP2
DG
DG
DG
2
2
2
N
1
-9.67
0.90
105.70
96.03
A
A
A
O5'
P
OP1
DG
DG
DG
2
2
2
N
1
11.70
1.20
110.70
122.40
A
A
A
O5'
P
OP2
DG
DG
DG
2
2
2
N
1
-12.55
0.80
109.40
96.85
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-17.36
1.60
120.90
103.54
A
A
A
P
O5'
C5'
DG
DG
DG
2
2
2
N
1
-5.65
0.70
102.20
96.55
A
A
A
C4'
C3'
C2'
DG
DG
DG
2
2
2
N
1
12.36
1.20
102.50
114.86
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
-7.56
0.70
108.00
100.44
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-8.86
0.60
125.10
116.24
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
6.21
0.60
123.90
130.11
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
-3.06
0.50
111.90
108.84
A
A
A
C2
N3
C4
DG
DG
DG
2
2
2
N
1
7.30
0.50
111.50
118.80
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
3.73
0.50
104.30
108.03
A
A
A
C5
N7
C8
DG
DG
DG
2
2
2
N
1
-3.37
0.50
113.10
109.73
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
-4.60
0.70
119.90
115.30
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-10.80
0.60
128.60
117.80
A
A
A
C5
C6
O6
DG
DG
DG
2
2
2
N
1
-8.87
1.30
127.00
118.13
A
A
A
C8
N9
C1'
DG
DG
DG
2
2
2
N
1
15.95
1.20
110.70
126.65
A
A
A
O5'
P
OP1
DU
DU
DU
3
3
3
N
1
-6.94
0.90
105.70
98.76
A
A
A
O5'
P
OP2
DU
DU
DU
3
3
3
N
1
-17.82
0.80
109.40
91.58
A
A
A
O5'
C5'
C4'
DU
DU
DU
3
3
3
N
1
6.24
0.70
110.30
116.54
A
A
A
C1'
O4'
C4'
DU
DU
DU
3
3
3
N
1
-6.32
0.60
125.90
119.58
A
A
A
C5
C4
O4
DU
DU
DU
3
3
3
N
1
-8.67
0.90
105.70
97.03
A
A
A
O5'
P
OP1
DA
DA
DA
4
4
4
N
1
-5.88
0.80
109.40
103.52
A
A
A
O5'
C5'
C4'
DA
DA
DA
4
4
4
N
1
-3.27
0.40
104.50
101.23
A
A
A
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
1
10.40
1.20
115.70
126.10
A
A
A
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
1
11.26
0.70
110.30
121.56
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
1
-4.58
0.50
129.30
124.72
A
A
A
N1
C2
N3
DA
DA
DA
4
4
4
N
1
3.93
0.50
110.70
114.63
A
A
A
C4
C5
N7
DA
DA
DA
4
4
4
N
1
-4.44
0.50
103.90
99.46
A
A
A
C5
N7
C8
DA
DA
DA
4
4
4
N
1
4.76
0.50
113.80
118.56
A
A
A
N7
C8
N9
DA
DA
DA
4
4
4
N
1
-2.63
0.40
105.80
103.17
A
A
A
N9
C4
C5
DA
DA
DA
4
4
4
N
1
5.79
0.60
118.60
124.39
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
1
-5.51
0.80
123.70
118.19
A
A
A
C5
C6
N6
DA
DA
DA
4
4
4
N
1
20.77
1.90
104.00
124.77
A
A
A
O3'
P
O5'
DA
5CM
5CM
4
5
5
Y
1
10.67
1.50
119.60
130.27
A
A
A
OP1
P
OP2
DG
DG
DG
6
6
6
N
1
-10.90
0.90
105.70
94.80
A
A
A
O5'
P
OP1
DG
DG
DG
6
6
6
N
1
-7.50
0.80
109.40
101.90
A
A
A
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
11.11
0.30
108.30
119.41
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-9.88
0.60
125.10
115.22
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
10.93
0.60
123.90
134.83
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
-3.04
0.50
111.90
108.86
A
A
A
C2
N3
C4
DG
DG
DG
6
6
6
N
1
-3.96
0.50
128.60
124.64
A
A
A
N3
C4
C5
DG
DG
DG
6
6
6
N
1
5.23
0.50
111.50
116.73
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-15.58
0.70
119.90
104.32
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-7.85
0.60
119.90
112.05
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
7.42
1.20
119.70
127.12
B
B
B
C3'
O3'
P
5CM
5CM
DG
7
7
8
Y
1
-18.46
0.80
109.40
90.94
B
B
B
O5'
C5'
C4'
DG
DG
DG
8
8
8
N
1
10.87
1.20
102.50
113.37
B
B
B
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
1
-4.71
0.70
108.00
103.29
B
B
B
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
-4.24
0.50
128.60
124.36
B
B
B
N3
C4
C5
DG
DG
DG
8
8
8
N
1
3.98
0.50
111.50
115.48
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
3.55
0.50
104.30
107.85
B
B
B
C5
N7
C8
DG
DG
DG
8
8
8
N
1
4.86
0.60
126.00
130.86
B
B
B
N3
C4
N9
DG
DG
DG
8
8
8
N
1
16.46
0.90
116.20
132.66
B
B
B
N1
C2
N2
DG
DG
DG
8
8
8
N
1
-15.09
0.70
119.90
104.81
B
B
B
N3
C2
N2
DG
DG
DG
8
8
8
N
1
6.60
0.60
119.90
126.50
B
B
B
N1
C6
O6
DG
DG
DG
8
8
8
N
1
-10.59
0.60
128.60
118.01
B
B
B
C5
C6
O6
DG
DG
DG
8
8
8
N
1
-6.83
0.90
105.70
98.87
B
B
B
O5'
P
OP2
DU
DU
DU
9
9
9
N
1
-4.20
0.40
104.50
100.30
B
B
B
O4'
C4'
C3'
DU
DU
DU
9
9
9
N
1
6.85
0.70
110.30
117.15
B
B
B
C1'
O4'
C4'
DU
DU
DU
9
9
9
N
1
-5.72
0.80
105.90
100.18
B
B
B
O4'
C1'
C2'
DU
DU
DU
9
9
9
N
1
-6.02
0.60
121.00
114.98
B
B
B
C6
N1
C2
DU
DU
DU
9
9
9
N
1
3.64
0.60
127.00
130.64
B
B
B
C2
N3
C4
DU
DU
DU
9
9
9
N
1
-5.13
0.60
114.60
109.47
B
B
B
N3
C4
C5
DU
DU
DU
9
9
9
N
1
4.77
0.50
122.70
127.47
B
B
B
C5
C6
N1
DU
DU
DU
9
9
9
N
1
5.51
0.60
125.90
131.41
B
B
B
C5
C4
O4
DU
DU
DU
9
9
9
N
1
-14.30
0.90
105.70
91.40
B
B
B
O5'
P
OP2
DA
DA
DA
10
10
10
N
1
-11.53
0.80
109.40
97.87
B
B
B
O5'
C5'
C4'
DA
DA
DA
10
10
10
N
1
-2.44
0.40
104.50
102.06
B
B
B
O4'
C4'
C3'
DA
DA
DA
10
10
10
N
1
9.64
0.70
110.30
119.94
B
B
B
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
1
7.97
1.20
102.50
110.47
B
B
B
C3'
C2'
C1'
DA
DA
DA
10
10
10
N
1
-7.57
0.80
105.90
98.33
B
B
B
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
1
-6.19
0.60
118.60
112.41
B
B
B
C6
N1
C2
DA
DA
DA
10
10
10
N
1
8.19
0.50
129.30
137.49
B
B
B
N1
C2
N3
DA
DA
DA
10
10
10
N
1
-3.26
0.40
105.80
102.54
B
B
B
C8
N9
C4
DA
DA
DA
10
10
10
N
1
-9.86
0.60
118.60
108.74
B
B
B
N1
C6
N6
DA
DA
DA
10
10
10
N
1
9.96
0.80
123.70
133.66
B
B
B
C5
C6
N6
DA
DA
DA
10
10
10
N
1
19.17
1.90
104.00
123.17
B
B
B
O3'
P
O5'
DA
5CM
5CM
10
11
11
Y
1
12.28
1.90
104.00
116.28
B
B
B
O3'
P
O5'
5CM
DG
DG
11
12
12
Y
1
-13.45
2.20
105.20
91.75
B
B
B
O3'
P
OP2
5CM
DG
DG
11
12
12
Y
1
14.61
1.50
119.60
134.21
B
B
B
OP1
P
OP2
DG
DG
DG
12
12
12
N
1
-5.87
0.90
105.70
99.83
B
B
B
O5'
P
OP1
DG
DG
DG
12
12
12
N
1
-9.35
0.80
109.40
100.05
B
B
B
O5'
C5'
C4'
DG
DG
DG
12
12
12
N
1
-7.59
0.70
102.20
94.61
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
1
-4.95
0.80
105.90
100.95
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
-13.72
0.60
125.10
111.38
B
B
B
C6
N1
C2
DG
DG
DG
12
12
12
N
1
8.12
0.60
123.90
132.02
B
B
B
N1
C2
N3
DG
DG
DG
12
12
12
N
1
9.90
0.50
111.50
121.40
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
1
5.51
0.50
104.30
109.81
B
B
B
C5
N7
C8
DG
DG
DG
12
12
12
N
1
-8.59
0.50
113.10
104.51
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
1
6.34
0.40
106.40
112.74
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
1
-3.25
0.40
105.40
102.15
B
B
B
N9
C4
C5
DG
DG
DG
12
12
12
N
1
4.68
0.60
126.00
130.68
B
B
B
N3
C4
N9
DG
DG
DG
12
12
12
N
1
-10.80
0.90
116.20
105.40
B
B
B
N1
C2
N2
DG
DG
DG
12
12
12
N
1
-11.31
0.60
119.90
108.59
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
1
A
A
P
O5'
DG
DG
2
2
0.065
0.010
1.593
1.658
N
1
A
A
C4'
C3'
DG
DG
2
2
0.079
0.010
1.529
1.608
N
1
A
A
C3'
C2'
DG
DG
2
2
-0.080
0.008
1.516
1.436
N
1
A
A
O4'
C1'
DG
DG
2
2
0.091
0.011
1.420
1.511
N
1
A
A
C1'
N9
DG
DG
2
2
-0.113
0.014
1.468
1.355
N
1
A
A
C2
N3
DG
DG
2
2
0.067
0.008
1.323
1.390
N
1
A
A
C6
N1
DG
DG
2
2
-0.043
0.007
1.391
1.348
N
1
A
A
C5
N7
DG
DG
2
2
-0.058
0.006
1.388
1.330
N
1
A
A
N7
C8
DG
DG
2
2
0.037
0.006
1.305
1.342
N
1
A
A
C2
N2
DG
DG
2
2
-0.099
0.010
1.341
1.242
N
1
A
A
C6
O6
DG
DG
2
2
0.064
0.009
1.237
1.301
N
1
A
A
C5'
C4'
DU
DU
3
3
0.061
0.007
1.512
1.573
N
1
A
A
O4'
C4'
DU
DU
3
3
-0.081
0.010
1.446
1.365
N
1
A
A
O3'
C3'
DU
DU
3
3
-0.095
0.006
1.419
1.324
N
1
A
A
N3
C4
DU
DU
3
3
-0.077
0.009
1.380
1.303
N
1
A
A
P
O5'
DA
DA
4
4
0.103
0.010
1.593
1.696
N
1
A
A
C5'
C4'
DA
DA
4
4
0.058
0.007
1.512
1.570
N
1
A
A
O4'
C4'
DA
DA
4
4
-0.116
0.010
1.446
1.330
N
1
A
A
C8
N9
DA
DA
4
4
-0.071
0.008
1.373
1.302
N
1
A
A
N9
C4
DA
DA
4
4
0.053
0.006
1.374
1.427
N
1
A
A
O3'
P
DA
5CM
4
5
-0.083
0.012
1.607
1.524
Y
1
A
A
P
O5'
DG
DG
6
6
0.064
0.010
1.593
1.657
N
1
A
A
C5'
C4'
DG
DG
6
6
0.062
0.007
1.512
1.574
N
1
A
A
C1'
N9
DG
DG
6
6
-0.157
0.014
1.468
1.311
N
1
A
A
N1
C2
DG
DG
6
6
-0.072
0.008
1.373
1.301
N
1
A
A
C6
N1
DG
DG
6
6
-0.046
0.007
1.391
1.345
N
1
A
A
C2
N2
DG
DG
6
6
-0.100
0.010
1.341
1.241
N
1
B
B
P
OP2
DG
DG
8
8
-0.136
0.017
1.485
1.349
N
1
B
B
P
O5'
DG
DG
8
8
0.134
0.010
1.593
1.727
N
1
B
B
C5'
C4'
DG
DG
8
8
0.048
0.007
1.512
1.560
N
1
B
B
C3'
C2'
DG
DG
8
8
-0.053
0.008
1.516
1.463
N
1
B
B
O3'
C3'
DG
DG
8
8
0.086
0.013
1.435
1.521
N
1
B
B
N1
C2
DG
DG
8
8
-0.051
0.008
1.373
1.322
N
1
B
B
C2
N3
DG
DG
8
8
0.050
0.008
1.323
1.373
N
1
B
B
C6
N1
DG
DG
8
8
-0.106
0.007
1.391
1.285
N
1
B
B
C5
N7
DG
DG
8
8
-0.052
0.006
1.388
1.336
N
1
B
B
C8
N9
DG
DG
8
8
-0.049
0.007
1.374
1.325
N
1
B
B
C2
N2
DG
DG
8
8
-0.155
0.010
1.341
1.186
N
1
B
B
C6
O6
DG
DG
8
8
0.063
0.009
1.237
1.300
N
1
B
B
P
O5'
DU
DU
9
9
0.142
0.010
1.593
1.735
N
1
B
B
C5'
C4'
DU
DU
9
9
0.057
0.007
1.512
1.569
N
1
B
B
C3'
C2'
DU
DU
9
9
-0.057
0.008
1.516
1.459
N
1
B
B
O4'
C4'
DU
DU
9
9
-0.081
0.010
1.446
1.365
N
1
B
B
O3'
C3'
DU
DU
9
9
-0.047
0.006
1.419
1.372
N
1
B
B
C2
N3
DU
DU
9
9
-0.069
0.007
1.373
1.304
N
1
B
B
P
O5'
DA
DA
10
10
0.120
0.010
1.593
1.713
N
1
B
B
C5'
C4'
DA
DA
10
10
0.081
0.007
1.512
1.593
N
1
B
B
O4'
C1'
DA
DA
10
10
0.100
0.011
1.420
1.520
N
1
B
B
C1'
N9
DA
DA
10
10
-0.107
0.014
1.468
1.361
N
1
B
B
C6
N1
DA
DA
10
10
0.042
0.007
1.351
1.393
N
1
B
B
C5
N7
DA
DA
10
10
-0.049
0.006
1.388
1.339
N
1
B
B
N9
C4
DA
DA
10
10
0.047
0.006
1.374
1.421
N
1
B
B
C6
N6
DA
DA
10
10
0.053
0.008
1.335
1.388
N
1
B
B
P
OP2
DG
DG
12
12
-0.125
0.017
1.485
1.360
N
1
B
B
C4'
C3'
DG
DG
12
12
0.166
0.010
1.529
1.695
N
1
B
B
C2'
C1'
DG
DG
12
12
0.079
0.010
1.519
1.598
N
1
B
B
O3'
C3'
DG
DG
12
12
-0.066
0.006
1.419
1.353
N
1
B
B
N1
C2
DG
DG
12
12
0.052
0.008
1.373
1.425
N
1
B
B
C6
N1
DG
DG
12
12
-0.042
0.007
1.391
1.349
N
1
B
B
C5
N7
DG
DG
12
12
-0.041
0.006
1.388
1.347
N
1
B
B
N7
C8
DG
DG
12
12
0.081
0.006
1.305
1.386
N
1
B
B
C8
N9
DG
DG
12
12
-0.044
0.007
1.374
1.330
N
1
B
B
N9
C4
DG
DG
12
12
0.057
0.008
1.375
1.432
N
1
B
B
C2
N2
DG
DG
12
12
-0.090
0.010
1.341
1.251
N
1
B
B
OP1
O
DG
HOH
8
62
1.16
1_555
2_665
1
B
A
OP2
O
5CM
HOH
11
14
1.86
1_555
1_455
1
B
B
O
O
HOH
HOH
65
96
2.17
1_555
2_665
0.209
1.300
2587
1
2.000
ZDFB24
TR
isotropic
TR
isotropic
1.300
86
334
10
238
0
fix
fix
1.300
1D40
2587
2.000
1
refinement
NUCLSQ
BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.628
both
A
5CM
1
A
O3'
5CM
1
1_555
A
DG
2
A
P
DG
2
1_555
covale
1.524
both
A
DA
4
A
O3'
DA
4
1_555
A
5CM
5
A
P
5CM
5
1_555
covale
1.581
both
A
5CM
5
A
O3'
5CM
5
1_555
A
DG
6
A
P
DG
6
1_555
covale
1.591
both
B
5CM
7
B
O3'
5CM
1
1_555
B
DG
8
B
P
DG
2
1_555
covale
1.559
both
B
DA
10
B
O3'
DA
4
1_555
B
5CM
11
B
P
5CM
5
1_555
covale
1.599
both
B
5CM
11
B
O3'
5CM
5
1_555
B
DG
12
B
P
DG
6
1_555
metalc
2.296
A
DG
2
A
N7
DG
2
1_555
A
CU
7
C
CU
CU
1_555
metalc
2.145
A
DG
6
A
N7
DG
6
1_555
A
CU
8
D
CU
CU
1_555
metalc
2.152
A
CU
7
C
CU
CU
1_555
A
HOH
13
G
O
HOH
1_555
metalc
2.032
A
CU
7
C
CU
CU
1_555
A
HOH
14
G
O
HOH
1_555
metalc
2.071
A
CU
7
C
CU
CU
1_555
A
HOH
15
G
O
HOH
1_555
metalc
2.205
A
CU
7
C
CU
CU
1_555
A
HOH
16
G
O
HOH
1_555
metalc
2.113
A
CU
7
C
CU
CU
1_555
A
HOH
17
G
O
HOH
1_555
metalc
2.307
A
CU
8
D
CU
CU
1_555
A
HOH
18
G
O
HOH
1_555
metalc
1.956
A
CU
8
D
CU
CU
1_555
A
HOH
19
G
O
HOH
1_555
metalc
2.089
A
CU
8
D
CU
CU
1_555
A
HOH
20
G
O
HOH
1_555
metalc
2.011
A
CU
8
D
CU
CU
1_555
A
HOH
21
G
O
HOH
1_555
metalc
1.847
A
CU
8
D
CU
CU
1_555
A
HOH
22
G
O
HOH
1_555
metalc
2.377
B
DG
8
B
N7
DG
2
1_555
B
CU
13
E
CU
CU
1_555
metalc
1.909
B
DA
10
B
N7
DA
4
1_555
B
CUL
14
F
CU
CUL
4_566
metalc
2.123
B
DG
12
B
N7
DG
6
1_555
B
CUL
14
F
CU
CUL
1_555
metalc
1.992
B
CU
13
E
CU
CU
1_555
B
HOH
23
H
O
HOH
1_555
metalc
1.983
B
CU
13
E
CU
CU
1_555
B
HOH
24
H
O
HOH
1_555
metalc
2.235
B
CU
13
E
CU
CU
1_555
B
HOH
25
H
O
HOH
1_555
metalc
2.214
B
CU
13
E
CU
CU
1_555
B
HOH
26
H
O
HOH
1_555
metalc
2.301
B
CUL
14
F
CU
CUL
1_555
B
HOH
27
H
O
HOH
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
N3
5CM
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
N4
5CM
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
O2
5CM
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
5CM
11
B
N3
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
5CM
11
B
O2
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
5CM
11
B
N4
5CM
5
1_555
hydrog
WATSON-CRICK
A
DU
3
A
N3
DU
3
1_555
B
DA
10
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DU
3
A
O4
DU
3
1_555
B
DA
10
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DU
9
B
N3
DU
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DU
9
B
O4
DU
3
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N3
5CM
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N4
5CM
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
O2
5CM
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
5CM
7
B
N3
5CM
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
5CM
7
B
O2
5CM
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
5CM
7
B
N4
5CM
1
1_555
DNA
Z-DNA, DOUBLE HELIX, MODIFIED, DNA
1D40
PDB
1
1D40
1
6
1D40
1
6
1D40
A
1
1
6
7
12
1D40
7
12
1D40
B
1
1
6
BINDING SITE FOR RESIDUE CU A 7
A
CU
7
Software
7
BINDING SITE FOR RESIDUE CU A 8
A
CU
8
Software
6
BINDING SITE FOR RESIDUE CU B 13
B
CU
13
Software
5
BINDING SITE FOR RESIDUE CUL B 14
B
CUL
14
Software
8
A
DG
2
A
DG
2
7
1_555
A
HOH
13
G
HOH
7
1_555
A
HOH
14
G
HOH
7
1_555
A
HOH
15
G
HOH
7
1_555
A
HOH
16
G
HOH
7
1_555
A
HOH
17
G
HOH
7
1_555
B
5CM
11
B
5CM
5
7
1_655
A
DG
6
A
DG
6
6
1_555
A
HOH
18
G
HOH
6
1_555
A
HOH
19
G
HOH
6
1_555
A
HOH
20
G
HOH
6
1_555
A
HOH
21
G
HOH
6
1_555
A
HOH
22
G
HOH
6
1_555
B
DG
8
B
DG
2
5
1_555
B
HOH
23
H
HOH
5
1_555
B
HOH
24
H
HOH
5
1_555
B
HOH
25
H
HOH
5
1_555
B
HOH
26
H
HOH
5
1_555
B
5CM
7
B
5CM
1
8
2_664
B
DU
9
B
DU
3
8
4_466
B
DA
10
B
DA
4
8
4_466
B
5CM
11
B
5CM
5
8
1_555
B
5CM
11
B
5CM
5
8
4_466
B
DG
12
B
DG
6
8
1_555
B
HOH
27
H
HOH
8
1_555
B
HOH
81
H
HOH
8
1_555
19
P 21 21 21