0.056117 0.000000 0.000000 0.000000 0.032852 0.000000 0.000000 0.000000 0.022462 0.00000 0.00000 0.00000 Zhou, G. Ho, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 17.820 30.440 44.520 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C Y 50 N N Y 51 N C Y 52 N N Y 53 N C Y 54 N C N 55 N N Y 56 N N Y 57 N C Y 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C N 123 N N N 124 N C N 125 N O N 126 N N N 127 N C N 128 N O N 129 N C N 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MG N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N sing Y 67 N sing Y 68 N doub N 69 N sing Y 70 N doub N 71 N sing N 72 N sing Y 73 N sing Y 74 N doub N 75 N sing Y 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Biochemistry BICHAW 0033 0006-2960 29 7229 7236 10.1021/bi00483a010 2207101 Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG). 1990 10.2210/pdb1d41/pdb pdb_00001d41 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ROOM TEMPERATURE 1 IMAGE PLATE RIGAKU x-ray 1 1.0 1823.245 DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 60 nat water no yes (5CM)(DG)(DU)(DA)(5CM)(DG) CGUACG A,B polydeoxyribonucleotide n n n n n n 1.66 25.71 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION ROOM TEMPERATURE WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 WATER 2 MPD 2 9.603 1 19 A 1 B 12 1.140 A_5CM1:DG12_B 1 0.654 -0.373 -0.057 -0.194 -8.635 1 19 A 2 B 11 3.792 A_DG2:5CM11_B 2 5.542 0.233 0.148 -0.182 6.575 1 20 A 3 B 10 -1.049 A_DU3:DA10_B 3 -7.867 -0.220 0.303 -0.180 -6.124 1 20 A 4 B 9 2.754 A_DA4:DU9_B 4 -3.211 0.142 -0.014 -0.057 -0.009 1 19 A 5 B 8 -0.128 A_5CM5:DG8_B 5 -0.801 -0.350 0.026 -0.173 -3.364 1 19 A 6 B 7 -0.735 A_DG6:5CM7_B 6 -2.506 0.226 0.056 -0.127 3.958 -11.696 A A 1 2 -0.418 B B 12 11 4.068 0.085 0.188 5.702 AA_5CM1DG2:5CM11DG12_BB 1 1.678 8.261 -11.575 -28.124 3.752 3.221 -46.924 A A 2 3 -0.322 B B 11 10 3.227 0.256 -0.174 -0.627 AA_DG2DU3:DA105CM11_BB 2 -1.901 -2.389 -46.887 0.767 -0.373 6.221 -15.754 A A 3 4 39.429 B B 10 9 3.873 -9.946 0.309 5.254 AA_DU3DA4:DU9DA10_BB 3 2.250 8.919 -12.025 -6.039 4.097 3.384 -48.458 A A 4 5 1.419 B B 9 8 3.409 -1.165 -0.279 -1.142 AA_DA45CM5:DG8DU9_BB 4 0.258 0.314 -48.444 1.484 -0.320 3.608 -14.290 A A 5 6 1.192 B B 8 7 3.558 -0.295 0.000 5.551 AA_5CM5DG6:5CM7DG8_BB 5 -2.702 -10.928 -14.031 -22.017 -2.735 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_conn_type struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-05-07 REL REL MG MAGNESIUM ION HOH water 1VTW ZDFB06 IN WHICH THE METHYL GROUPS OF THE THYMINE BASES WERE REMOVED FROM THE C5 POSITIONS. PDB experimental model MO5 13 2 MG MG 13 B MO6 14 2 MG MG 14 B HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 24 3 HOH HOH 24 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 29 3 HOH HOH 29 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 44 3 HOH HOH 44 A HOH 46 3 HOH HOH 46 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 58 3 HOH HOH 58 A HOH 63 3 HOH HOH 63 A MO6 14 3 HOH HOH 69 A MO6 14 3 HOH HOH 71 A MO6 14 3 HOH HOH 72 A MO6 14 3 HOH HOH 73 A MO6 14 3 HOH HOH 74 A HOH 15 3 HOH HOH 15 B HOH 22 3 HOH HOH 22 B HOH 23 3 HOH HOH 23 B HOH 25 3 HOH HOH 25 B HOH 28 3 HOH HOH 28 B HOH 30 3 HOH HOH 30 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 35 3 HOH HOH 35 B HOH 42 3 HOH HOH 42 B HOH 43 3 HOH HOH 43 B HOH 45 3 HOH HOH 45 B HOH 47 3 HOH HOH 47 B HOH 50 3 HOH HOH 50 B HOH 56 3 HOH HOH 56 B HOH 57 3 HOH HOH 57 B HOH 59 3 HOH HOH 59 B HOH 60 3 HOH HOH 60 B HOH 61 3 HOH HOH 61 B HOH 62 3 HOH HOH 62 B MO5 13 3 HOH HOH 64 B MO5 13 3 HOH HOH 65 B MO5 13 3 HOH HOH 66 B MO5 13 3 HOH HOH 67 B MO5 13 3 HOH HOH 68 B MO6 14 3 HOH HOH 70 B +C 1 n 1 5CM 1 A G 2 n 2 DG 2 A U 3 n 3 DU 3 A A 4 n 4 DA 4 A +C 5 n 5 5CM 5 A G 6 n 6 DG 6 A +C 7 n 1 5CM 7 B G 8 n 2 DG 8 B U 9 n 3 DU 9 B A 10 n 4 DA 10 B +C 11 n 5 5CM 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 71 E O HOH 1_555 94.3 A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 72 E O HOH 1_555 85.9 A HOH 71 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 72 E O HOH 1_555 177.3 A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 73 E O HOH 1_555 85.9 A HOH 71 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 73 E O HOH 1_555 82.6 A HOH 72 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 73 E O HOH 1_555 94.7 A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 74 E O HOH 1_555 92.3 A HOH 71 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 74 E O HOH 1_555 83.9 A HOH 72 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 74 E O HOH 1_555 98.8 A HOH 73 E O HOH 1_555 B MG 14 D MG MG 1_555 A HOH 74 E O HOH 1_555 166.2 A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 175.0 A HOH 71 E O HOH 1_555 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 89.5 A HOH 72 E O HOH 1_555 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 90.2 A HOH 73 E O HOH 1_555 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 91.3 A HOH 74 E O HOH 1_555 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 91.3 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 B HOH 64 F O HOH 1_555 91.5 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 B HOH 65 F O HOH 1_555 89.0 B HOH 64 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 65 F O HOH 1_555 172.7 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 B HOH 66 F O HOH 1_555 91.3 B HOH 64 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 66 F O HOH 1_555 89.9 B HOH 65 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 66 F O HOH 1_555 82.9 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 B HOH 67 F O HOH 1_555 96.8 B HOH 64 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 67 F O HOH 1_555 105.1 B HOH 65 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 67 F O HOH 1_555 82.0 B HOH 66 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 67 F O HOH 1_555 162.6 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 172.0 B HOH 64 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 96.0 B HOH 65 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 83.2 B HOH 66 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 86.0 B HOH 67 F O HOH 1_555 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 83.9 A 5CM 1 A 5CM 1 DC A 5CM 5 A 5CM 5 DC B 5CM 7 B 5CM 1 DC B 5CM 11 B 5CM 5 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O O HOH HOH 19 39 1.69 1 A A O3' O DG HOH 2 20 1.92 1 B B C5' O 5CM HOH 7 30 2.16 1 17.28 1.50 119.60 136.88 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 -15.22 0.90 105.70 90.48 A A A O5' P OP1 DG DG DG 2 2 2 N 1 8.58 1.20 110.70 119.28 A A A O5' P OP2 DG DG DG 2 2 2 N 1 6.14 0.90 103.10 109.24 A A A C4' C3' C2' DG DG DG 2 2 2 N 1 6.77 0.60 123.90 130.67 A A A N1 C2 N3 DG DG DG 2 2 2 N 1 3.90 0.40 110.80 114.70 A A A C4 C5 N7 DG DG DG 2 2 2 N 1 -3.77 0.50 104.30 100.53 A A A C5 N7 C8 DG DG DG 2 2 2 N 1 -8.11 0.70 119.90 111.79 A A A N3 C2 N2 DG DG DG 2 2 2 N 1 -4.63 0.60 128.60 123.97 A A A C5 C6 O6 DG DG DG 2 2 2 N 1 -13.74 2.20 105.20 91.46 A A A O3' P OP1 DG DU DU 2 3 3 Y 1 -17.52 0.80 109.40 91.88 A A A O5' C5' C4' DU DU DU 3 3 3 N 1 -2.78 0.40 104.50 101.72 A A A O4' C4' C3' DU DU DU 3 3 3 N 1 7.25 0.90 103.10 110.35 A A A C4' C3' C2' DU DU DU 3 3 3 N 1 -10.61 0.80 102.40 91.79 A A A C3' C2' C1' DU DU DU 3 3 3 N 1 -5.45 0.70 108.00 102.55 A A A O4' C1' N1 DU DU DU 3 3 3 N 1 -6.46 0.80 109.40 102.94 A A A O5' C5' C4' DA DA DA 4 4 4 N 1 -15.47 2.50 109.70 94.23 A A A C4' C3' O3' DA DA DA 4 4 4 N 1 7.40 1.20 102.50 109.90 A A A C3' C2' C1' DA DA DA 4 4 4 N 1 -5.13 0.80 105.90 100.77 A A A O4' C1' C2' DA DA DA 4 4 4 N 1 -3.42 0.50 103.90 100.48 A A A C5 N7 C8 DA DA DA 4 4 4 N 1 -7.56 0.90 105.70 98.14 A A A O5' P OP1 DG DG DG 6 6 6 N 1 8.55 1.20 110.70 119.25 A A A O5' P OP2 DG DG DG 6 6 6 N 1 -13.23 0.80 109.40 96.17 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -12.87 1.60 120.90 108.03 A A A P O5' C5' DG DG DG 6 6 6 N 1 9.35 0.60 106.00 115.35 A A A O4' C4' C3' DG DG DG 6 6 6 N 1 -4.50 0.70 102.20 97.70 A A A C4' C3' C2' DG DG DG 6 6 6 N 1 8.48 1.20 102.50 110.98 A A A C3' C2' C1' DG DG DG 6 6 6 N 1 -9.07 0.60 125.10 116.03 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 6.97 0.60 123.90 130.87 A A A N1 C2 N3 DG DG DG 6 6 6 N 1 -5.07 0.50 111.90 106.83 A A A C2 N3 C4 DG DG DG 6 6 6 N 1 4.96 0.50 111.50 116.46 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 3.42 0.40 106.40 109.82 A A A C8 N9 C4 DG DG DG 6 6 6 N 1 -8.82 0.70 119.90 111.08 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -4.92 0.60 119.90 114.98 A A A N1 C6 O6 DG DG DG 6 6 6 N 1 -10.63 0.80 109.40 98.77 B B B O5' C5' C4' DG DG DG 8 8 8 N 1 -12.94 1.80 114.10 101.16 B B B C5' C4' C3' DG DG DG 8 8 8 N 1 7.34 1.10 109.80 117.14 B B B C5' C4' O4' DG DG DG 8 8 8 N 1 7.60 0.50 106.80 114.40 B B B O4' C1' C2' DG DG DG 8 8 8 N 1 -7.17 0.60 125.10 117.93 B B B C6 N1 C2 DG DG DG 8 8 8 N 1 4.63 0.60 123.90 128.53 B B B N1 C2 N3 DG DG DG 8 8 8 N 1 6.21 0.50 111.50 117.71 B B B C5 C6 N1 DG DG DG 8 8 8 N 1 4.21 0.40 110.80 115.01 B B B C4 C5 N7 DG DG DG 8 8 8 N 1 -3.70 0.40 105.40 101.70 B B B N9 C4 C5 DG DG DG 8 8 8 N 1 4.94 0.60 126.00 130.94 B B B N3 C4 N9 DG DG DG 8 8 8 N 1 -8.12 0.70 119.90 111.78 B B B N3 C2 N2 DG DG DG 8 8 8 N 1 -5.19 0.60 128.60 123.41 B B B C5 C6 O6 DG DG DG 8 8 8 N 1 9.97 1.20 119.70 129.67 B B B C3' O3' P DG DG DU 8 8 9 Y 1 -14.36 1.50 119.60 105.24 B B B OP1 P OP2 DU DU DU 9 9 9 N 1 7.27 1.20 110.70 117.97 B B B O5' P OP1 DU DU DU 9 9 9 N 1 -5.04 0.80 109.40 104.36 B B B O5' C5' C4' DU DU DU 9 9 9 N 1 -3.38 0.40 104.50 101.12 B B B O4' C4' C3' DU DU DU 9 9 9 N 1 8.76 1.20 115.70 124.46 B B B C5' C4' C3' DU DU DU 9 9 9 N 1 -8.67 0.80 102.40 93.73 B B B C3' C2' C1' DU DU DU 9 9 9 N 1 -5.74 0.70 108.00 102.26 B B B O4' C1' N1 DU DU DU 9 9 9 N 1 4.84 0.60 121.00 125.84 B B B C6 N1 C2 DU DU DU 9 9 9 N 1 -6.44 0.50 122.70 116.26 B B B C5 C6 N1 DU DU DU 9 9 9 N 1 -5.18 0.70 119.40 114.22 B B B N3 C4 O4 DU DU DU 9 9 9 N 1 8.41 1.20 119.70 128.11 B B B C3' O3' P DU DU DA 9 9 10 Y 1 -7.20 0.90 105.70 98.50 B B B O5' P OP2 DA DA DA 10 10 10 N 1 -5.03 0.80 109.40 104.37 B B B O5' C5' C4' DA DA DA 10 10 10 N 1 -3.99 0.40 104.50 100.51 B B B O4' C4' C3' DA DA DA 10 10 10 N 1 9.15 0.70 110.30 119.45 B B B C1' O4' C4' DA DA DA 10 10 10 N 1 8.32 0.90 103.10 111.42 B B B C4' C3' C2' DA DA DA 10 10 10 N 1 -4.85 0.80 105.90 101.05 B B B O4' C1' C2' DA DA DA 10 10 10 N 1 6.44 0.30 108.30 114.74 B B B O4' C1' N9 DA DA DA 10 10 10 N 1 -3.68 0.50 129.30 125.62 B B B N1 C2 N3 DA DA DA 10 10 10 N 1 -3.14 0.40 105.80 102.66 B B B N9 C4 C5 DA DA DA 10 10 10 N 1 4.78 0.60 118.60 123.38 B B B N1 C6 N6 DA DA DA 10 10 10 N 1 -5.10 0.80 123.70 118.60 B B B C5 C6 N6 DA DA DA 10 10 10 N 1 8.71 1.20 119.70 128.41 B B B C3' O3' P DA DA 5CM 10 10 11 Y 1 11.38 1.20 110.70 122.08 B B B O5' P OP1 DG DG DG 12 12 12 N 1 -16.59 0.90 105.70 89.11 B B B O5' P OP2 DG DG DG 12 12 12 N 1 -9.83 0.40 104.50 94.67 B B B O4' C4' C3' DG DG DG 12 12 12 N 1 7.70 1.20 115.70 123.40 B B B C5' C4' C3' DG DG DG 12 12 12 N 1 9.54 0.90 103.10 112.64 B B B C4' C3' C2' DG DG DG 12 12 12 N 1 -5.60 0.80 102.40 96.80 B B B C3' C2' C1' DG DG DG 12 12 12 N 1 -12.47 0.60 125.10 112.63 B B B C6 N1 C2 DG DG DG 12 12 12 N 1 13.02 0.60 123.90 136.92 B B B N1 C2 N3 DG DG DG 12 12 12 N 1 -4.22 0.50 128.60 124.38 B B B N3 C4 C5 DG DG DG 12 12 12 N 1 5.73 0.50 111.50 117.23 B B B C5 C6 N1 DG DG DG 12 12 12 N 1 2.85 0.40 106.40 109.25 B B B C8 N9 C4 DG DG DG 12 12 12 N 1 6.16 0.60 126.00 132.16 B B B N3 C4 N9 DG DG DG 12 12 12 N 1 -16.53 0.70 119.90 103.37 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 -7.31 0.60 128.60 121.29 B B B C5 C6 O6 DG DG DG 12 12 12 N 1 A A C4' C3' DG DG 2 2 0.107 0.010 1.529 1.636 N 1 A A C3' C2' DG DG 2 2 -0.062 0.008 1.516 1.454 N 1 A A C2' C1' DG DG 2 2 0.127 0.010 1.519 1.646 N 1 A A O4' C1' DG DG 2 2 0.082 0.011 1.420 1.502 N 1 A A C1' N9 DG DG 2 2 -0.142 0.014 1.468 1.326 N 1 A A N1 C2 DG DG 2 2 -0.066 0.008 1.373 1.307 N 1 A A C2 N3 DG DG 2 2 -0.048 0.008 1.323 1.275 N 1 A A N7 C8 DG DG 2 2 0.051 0.006 1.305 1.356 N 1 A A C2 N2 DG DG 2 2 -0.090 0.010 1.341 1.251 N 1 A A O3' P DG DU 2 3 0.089 0.012 1.607 1.696 Y 1 A A C2' C1' DU DU 3 3 0.144 0.010 1.519 1.663 N 1 A A O4' C1' DA DA 4 4 0.136 0.011 1.420 1.556 N 1 A A C4 C5 DA DA 4 4 -0.065 0.007 1.383 1.318 N 1 A A N7 C8 DA DA 4 4 0.043 0.007 1.311 1.354 N 1 A A C8 N9 DA DA 4 4 -0.071 0.008 1.373 1.302 N 1 A A C6 N6 DA DA 4 4 0.077 0.008 1.335 1.412 N 1 A A P O5' DG DG 6 6 0.083 0.010 1.593 1.676 N 1 A A C5' C4' DG DG 6 6 0.082 0.007 1.512 1.594 N 1 A A C4' C3' DG DG 6 6 -0.108 0.010 1.521 1.413 N 1 A A C3' C2' DG DG 6 6 -0.077 0.008 1.516 1.439 N 1 A A N1 C2 DG DG 6 6 -0.072 0.008 1.373 1.301 N 1 A A C2 N3 DG DG 6 6 0.053 0.008 1.323 1.376 N 1 A A C4 C5 DG DG 6 6 -0.063 0.007 1.379 1.316 N 1 A A C5 N7 DG DG 6 6 0.056 0.006 1.388 1.444 N 1 A A C8 N9 DG DG 6 6 -0.068 0.007 1.374 1.306 N 1 B B O3' P 5CM DG 7 8 -0.084 0.012 1.607 1.523 Y 1 B B C4' C3' DG DG 8 8 0.134 0.010 1.529 1.663 N 1 B B C3' C2' DG DG 8 8 -0.069 0.008 1.516 1.447 N 1 B B C2' C1' DG DG 8 8 -0.109 0.010 1.518 1.409 N 1 B B O4' C1' DG DG 8 8 0.083 0.011 1.420 1.503 N 1 B B N7 C8 DG DG 8 8 0.080 0.006 1.305 1.385 N 1 B B C8 N9 DG DG 8 8 -0.045 0.007 1.374 1.329 N 1 B B N9 C4 DG DG 8 8 0.081 0.008 1.375 1.456 N 1 B B C2 N2 DG DG 8 8 -0.076 0.010 1.341 1.265 N 1 B B C5' C4' DU DU 9 9 0.048 0.007 1.512 1.560 N 1 B B C2' C1' DU DU 9 9 0.086 0.010 1.519 1.605 N 1 B B O3' C3' DU DU 9 9 -0.061 0.006 1.419 1.358 N 1 B B C1' N1 DU DU 9 9 0.119 0.013 1.488 1.607 N 1 B B N1 C2 DU DU 9 9 -0.063 0.009 1.381 1.318 N 1 B B P OP2 DA DA 10 10 -0.113 0.017 1.485 1.372 N 1 B B P O5' DA DA 10 10 0.088 0.010 1.593 1.681 N 1 B B C5' C4' DA DA 10 10 -0.080 0.011 1.509 1.429 N 1 B B C1' N9 DA DA 10 10 -0.089 0.014 1.468 1.379 N 1 B B C2 N3 DA DA 10 10 0.058 0.009 1.331 1.389 N 1 B B C6 N6 DA DA 10 10 0.049 0.008 1.335 1.384 N 1 B B P O5' DG DG 12 12 0.082 0.010 1.593 1.675 N 1 B B C3' C2' DG DG 12 12 -0.050 0.008 1.516 1.466 N 1 B B O4' C4' DG DG 12 12 -0.102 0.010 1.446 1.344 N 1 B B O3' C3' DG DG 12 12 -0.099 0.006 1.419 1.320 N 1 B B N1 C2 DG DG 12 12 -0.064 0.008 1.373 1.309 N 1 B B N7 C8 DG DG 12 12 0.050 0.006 1.305 1.355 N 1 B B C8 N9 DG DG 12 12 -0.047 0.007 1.374 1.327 N 0.208 1.300 2870 1 ZDFB06 IN WHICH THE METHYL GROUPS OF THE THYMINE BASES WERE REMOVED FROM THE C5 POSITIONS. TR isotropic TR isotropic TR isotropic 1.300 49 304 17 238 0 fix fix fix 1.300 1D41 3869 2870 2.000 1 refinement NUCLSQ STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N covale 1.643 both A 5CM 1 A O3' 5CM 1 1_555 A DG 2 A P DG 2 1_555 covale 1.615 both A DA 4 A O3' DA 4 1_555 A 5CM 5 A P 5CM 5 1_555 covale 1.616 both A 5CM 5 A O3' 5CM 5 1_555 A DG 6 A P DG 6 1_555 covale 1.523 both B 5CM 7 B O3' 5CM 1 1_555 B DG 8 B P DG 2 1_555 covale 1.626 both B DA 10 B O3' DA 4 1_555 B 5CM 11 B P 5CM 5 1_555 covale 1.604 both B 5CM 11 B O3' 5CM 5 1_555 B DG 12 B P DG 6 1_555 metalc 2.124 A HOH 69 E O HOH 1_555 B MG 14 D MG MG 1_555 metalc 2.076 A HOH 71 E O HOH 1_555 B MG 14 D MG MG 1_555 metalc 2.050 A HOH 72 E O HOH 1_555 B MG 14 D MG MG 1_555 metalc 2.189 A HOH 73 E O HOH 1_555 B MG 14 D MG MG 1_555 metalc 2.079 A HOH 74 E O HOH 1_555 B MG 14 D MG MG 1_555 metalc 1.968 B DU 9 B OP2 DU 3 1_555 B MG 13 C MG MG 1_555 metalc 2.051 B MG 13 C MG MG 1_555 B HOH 64 F O HOH 1_555 metalc 2.090 B MG 13 C MG MG 1_555 B HOH 65 F O HOH 1_555 metalc 2.240 B MG 13 C MG MG 1_555 B HOH 66 F O HOH 1_555 metalc 2.024 B MG 13 C MG MG 1_555 B HOH 67 F O HOH 1_555 metalc 2.180 B MG 13 C MG MG 1_555 B HOH 68 F O HOH 1_555 metalc 2.171 B MG 14 D MG MG 1_555 B HOH 70 F O HOH 1_555 hydrog WATSON-CRICK A 5CM 1 A N3 5CM 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A 5CM 1 A N4 5CM 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A 5CM 1 A O2 5CM 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B 5CM 11 B N3 5CM 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B 5CM 11 B O2 5CM 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B 5CM 11 B N4 5CM 5 1_555 hydrog WATSON-CRICK A DU 3 A N3 DU 3 1_555 B DA 10 B N1 DA 4 1_555 hydrog WATSON-CRICK A DU 3 A O4 DU 3 1_555 B DA 10 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DU 9 B N3 DU 3 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DU 9 B O4 DU 3 1_555 hydrog WATSON-CRICK A 5CM 5 A N3 5CM 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A 5CM 5 A N4 5CM 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A 5CM 5 A O2 5CM 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B 5CM 7 B N3 5CM 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B 5CM 7 B O2 5CM 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B 5CM 7 B N4 5CM 1 1_555 DNA Z-DNA, DOUBLE HELIX, MODIFIED, DNA 1D41 PDB 1 1D41 1 6 1D41 1 6 1D41 A 1 1 6 7 12 1D41 7 12 1D41 B 1 1 6 BINDING SITE FOR RESIDUE MG B 13 B MG 13 Software 6 BINDING SITE FOR RESIDUE MG B 14 B MG 14 Software 6 B DU 9 B DU 3 6 1_555 B HOH 64 F HOH 6 1_555 B HOH 65 F HOH 6 1_555 B HOH 66 F HOH 6 1_555 B HOH 67 F HOH 6 1_555 B HOH 68 F HOH 6 1_555 A HOH 69 E HOH 6 1_555 A HOH 71 E HOH 6 1_555 A HOH 72 E HOH 6 1_555 A HOH 73 E HOH 6 1_555 A HOH 74 E HOH 6 1_555 B HOH 70 F HOH 6 1_555 19 P 21 21 21