1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schmitz, U.
James, T.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
221
271
292
10.1016/0022-2836(91)80219-K
1920410
Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments.
1991
US
Biochemistry
BICHAW
0033
0006-2960
29
2357
Deoxyribose Conformation in [D(GTATATAC)]2: Evaluation of Sugar Pucker by Simulation of Double-Quantum-Filtered Cosy Cross-Peaks
1990
10.2210/pdb1d42/pdb
pdb_00001d42
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2425.629
DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3')
2
syn
polymer
no
no
(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DC)
GTATATAC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
-11.482
1
19
A
1
B
16
0.456
A_DG1:DC16_B
1
-25.365
-0.260
-0.107
-0.199
-12.840
1
20
A
2
B
15
-3.361
A_DT2:DA15_B
2
-23.237
-0.029
-0.028
-0.121
-10.492
1
20
A
3
B
14
-2.059
A_DA3:DT14_B
3
-2.943
-0.025
0.481
-0.176
-5.004
1
20
A
4
B
13
-4.083
A_DT4:DA13_B
4
-5.526
0.119
0.602
-0.232
6.652
1
20
A
5
B
12
-3.665
A_DA5:DT12_B
5
1.004
-0.219
0.655
-0.246
17.616
1
20
A
6
B
11
-2.559
A_DT6:DA11_B
6
4.454
0.194
0.392
-0.196
28.145
1
20
A
7
B
10
-4.366
A_DA7:DT10_B
7
-23.108
0.051
0.100
-0.090
20.437
1
19
A
8
B
9
0.694
A_DC8:DG9_B
8
-30.235
0.328
-0.202
-0.191
3.012
32.994
A
A
1
2
3.632
B
B
16
15
3.063
2.061
-0.569
-0.789
AA_DG1DT2:DA15DC16_BB
1
-0.165
0.290
32.931
-1.714
0.975
2.484
33.853
A
A
2
3
18.826
B
B
15
14
2.869
10.752
-0.021
-0.719
AA_DT2DA3:DT14DA15_BB
2
-4.392
7.690
31.853
-2.699
-0.562
3.048
29.937
A
A
3
4
0.834
B
B
14
13
3.064
0.431
-0.278
-0.875
AA_DA3DT4:DA13DT14_BB
3
0.419
-0.811
29.932
-1.776
0.619
2.520
47.587
A
A
4
5
-13.963
B
B
13
12
2.892
-11.170
-0.047
1.350
AA_DT4DA5:DT12DA13_BB
4
-2.080
2.600
46.287
2.427
-0.082
2.875
26.898
A
A
5
6
8.248
B
B
12
11
3.028
3.824
0.217
-0.880
AA_DA5DT6:DA11DT12_BB
5
-0.101
0.217
26.629
-2.783
-0.489
2.595
28.335
A
A
6
7
18.512
B
B
11
10
2.829
8.883
0.025
-0.226
AA_DT6DA7:DT10DA11_BB
6
4.101
-8.546
26.625
-2.218
0.761
3.128
32.990
A
A
7
8
7.417
B
B
10
9
3.249
4.199
0.863
-1.106
AA_DA7DC8:DG9DT10_BB
7
1.780
-3.144
32.682
-2.646
-1.223
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1993-04-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1991-05-15
REL
REL
5
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
G
9
n
1
DG
9
B
T
10
n
2
DT
10
B
A
11
n
3
DA
11
B
T
12
n
4
DT
12
B
A
13
n
5
DA
13
B
T
14
n
6
DT
14
B
A
15
n
7
DA
15
B
C
16
n
8
DC
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C3'
DC
16
WRONG HAND
1
B
DG
9
0.072
SIDE CHAIN
1
B
DA
13
0.052
SIDE CHAIN
1
B
DT
14
0.062
SIDE CHAIN
2
A
DA
5
0.080
SIDE CHAIN
2
A
DA
7
0.115
SIDE CHAIN
2
B
DG
9
0.075
SIDE CHAIN
2
B
DA
13
0.074
SIDE CHAIN
2
B
DT
14
0.071
SIDE CHAIN
2
B
DA
15
0.074
SIDE CHAIN
3
A
DA
5
0.108
SIDE CHAIN
3
B
DG
9
0.071
SIDE CHAIN
3
B
DA
13
0.096
SIDE CHAIN
4
A
DA
5
0.078
SIDE CHAIN
4
B
DG
9
0.074
SIDE CHAIN
4
B
DA
13
0.089
SIDE CHAIN
5
A
DA
5
0.084
SIDE CHAIN
5
B
DA
13
0.084
SIDE CHAIN
1
7.61
1.20
119.70
127.31
A
A
A
C3'
O3'
P
DT
DT
DA
2
2
3
Y
1
2.70
0.30
108.30
111.00
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
5.57
0.30
108.30
113.87
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
7.58
1.20
119.70
127.28
B
B
B
C3'
O3'
P
DT
DT
DA
10
10
11
Y
1
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
2
7.56
1.20
119.70
127.26
A
A
A
C3'
O3'
P
DA
DA
DT
3
3
4
Y
2
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
3.49
0.30
108.30
111.79
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
2.60
0.30
108.30
110.90
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
3.04
0.30
108.30
111.34
B
B
B
O4'
C1'
N1
DT
DT
DT
10
10
10
N
2
5.13
0.30
108.30
113.43
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
2
3.03
0.30
108.30
111.33
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
3
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
3
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
3
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
3
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
7.31
1.20
119.70
127.01
B
B
B
C3'
O3'
P
DT
DT
DA
10
10
11
Y
3
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
3
2.50
0.30
108.30
110.80
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
4
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
4
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
4
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
4
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
4
1.87
0.30
108.30
110.17
B
B
B
O4'
C1'
N1
DT
DT
DT
10
10
10
N
4
7.22
1.20
119.70
126.92
B
B
B
C3'
O3'
P
DT
DT
DA
10
10
11
Y
4
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
3.01
0.30
108.30
111.31
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
4
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
5
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
5
7.50
1.20
119.70
127.20
A
A
A
C3'
O3'
P
DA
DA
DT
3
3
4
Y
5
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
5
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
7.40
1.20
119.70
127.10
B
B
B
C3'
O3'
P
DT
DT
DA
10
10
11
Y
5
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
5
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
refinement
AMBER
SOLUTION STRUCTURE OF [D(GTATATAC)]2 VIA RESTRAINED MOLECULAR DYNAMICS SIMULATIONS WITH NUCLEAR MAGNETIC RESONANCE CONSTRAINTS DERIVED FROM RELAXATION MATRIX ANALYSIS OF TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT EXPERIMENTS
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
16
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
16
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
16
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
15
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
15
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
14
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
14
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
13
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
13
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
12
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
12
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
11
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
11
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
10
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
10
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
9
B
N2
DG
1
1_555
DNA
DNA
1D42
PDB
1
1D42
1
8
1D42
1
8
1D42
A
1
1
8
9
16
1D42
9
16
1D42
B
1
1
8
1
P 1