1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Schmitz, U. James, T.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 221 271 292 10.1016/0022-2836(91)80219-K 1920410 Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments. 1991 US Biochemistry BICHAW 0033 0006-2960 29 2357 Deoxyribose Conformation in [D(GTATATAC)]2: Evaluation of Sugar Pucker by Simulation of Double-Quantum-Filtered Cosy Cross-Peaks 1990 10.2210/pdb1d42/pdb pdb_00001d42 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2425.629 DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3') 2 syn polymer no no (DG)(DT)(DA)(DT)(DA)(DT)(DA)(DC) GTATATAC A,B polydeoxyribonucleotide n n n n n n n n -11.482 1 19 A 1 B 16 0.456 A_DG1:DC16_B 1 -25.365 -0.260 -0.107 -0.199 -12.840 1 20 A 2 B 15 -3.361 A_DT2:DA15_B 2 -23.237 -0.029 -0.028 -0.121 -10.492 1 20 A 3 B 14 -2.059 A_DA3:DT14_B 3 -2.943 -0.025 0.481 -0.176 -5.004 1 20 A 4 B 13 -4.083 A_DT4:DA13_B 4 -5.526 0.119 0.602 -0.232 6.652 1 20 A 5 B 12 -3.665 A_DA5:DT12_B 5 1.004 -0.219 0.655 -0.246 17.616 1 20 A 6 B 11 -2.559 A_DT6:DA11_B 6 4.454 0.194 0.392 -0.196 28.145 1 20 A 7 B 10 -4.366 A_DA7:DT10_B 7 -23.108 0.051 0.100 -0.090 20.437 1 19 A 8 B 9 0.694 A_DC8:DG9_B 8 -30.235 0.328 -0.202 -0.191 3.012 32.994 A A 1 2 3.632 B B 16 15 3.063 2.061 -0.569 -0.789 AA_DG1DT2:DA15DC16_BB 1 -0.165 0.290 32.931 -1.714 0.975 2.484 33.853 A A 2 3 18.826 B B 15 14 2.869 10.752 -0.021 -0.719 AA_DT2DA3:DT14DA15_BB 2 -4.392 7.690 31.853 -2.699 -0.562 3.048 29.937 A A 3 4 0.834 B B 14 13 3.064 0.431 -0.278 -0.875 AA_DA3DT4:DA13DT14_BB 3 0.419 -0.811 29.932 -1.776 0.619 2.520 47.587 A A 4 5 -13.963 B B 13 12 2.892 -11.170 -0.047 1.350 AA_DT4DA5:DT12DA13_BB 4 -2.080 2.600 46.287 2.427 -0.082 2.875 26.898 A A 5 6 8.248 B B 12 11 3.028 3.824 0.217 -0.880 AA_DA5DT6:DA11DT12_BB 5 -0.101 0.217 26.629 -2.783 -0.489 2.595 28.335 A A 6 7 18.512 B B 11 10 2.829 8.883 0.025 -0.226 AA_DT6DA7:DT10DA11_BB 6 4.101 -8.546 26.625 -2.218 0.761 3.128 32.990 A A 7 8 7.417 B B 10 9 3.249 4.199 0.863 -1.106 AA_DA7DC8:DG9DT10_BB 7 1.780 -3.144 32.682 -2.646 -1.223 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1993-04-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1991-05-15 REL REL 5 G 1 n 1 DG 1 A T 2 n 2 DT 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 1 DG 9 B T 10 n 2 DT 10 B A 11 n 3 DA 11 B T 12 n 4 DT 12 B A 13 n 5 DA 13 B T 14 n 6 DT 14 B A 15 n 7 DA 15 B C 16 n 8 DC 16 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C3' DC 16 WRONG HAND 1 B DG 9 0.072 SIDE CHAIN 1 B DA 13 0.052 SIDE CHAIN 1 B DT 14 0.062 SIDE CHAIN 2 A DA 5 0.080 SIDE CHAIN 2 A DA 7 0.115 SIDE CHAIN 2 B DG 9 0.075 SIDE CHAIN 2 B DA 13 0.074 SIDE CHAIN 2 B DT 14 0.071 SIDE CHAIN 2 B DA 15 0.074 SIDE CHAIN 3 A DA 5 0.108 SIDE CHAIN 3 B DG 9 0.071 SIDE CHAIN 3 B DA 13 0.096 SIDE CHAIN 4 A DA 5 0.078 SIDE CHAIN 4 B DG 9 0.074 SIDE CHAIN 4 B DA 13 0.089 SIDE CHAIN 5 A DA 5 0.084 SIDE CHAIN 5 B DA 13 0.084 SIDE CHAIN 1 7.61 1.20 119.70 127.31 A A A C3' O3' P DT DT DA 2 2 3 Y 1 2.70 0.30 108.30 111.00 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 5.57 0.30 108.30 113.87 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 7.58 1.20 119.70 127.28 B B B C3' O3' P DT DT DA 10 10 11 Y 1 2.92 0.30 108.30 111.22 B B B O4' C1' N1 DT DT DT 12 12 12 N 2 2.49 0.30 108.30 110.79 A A A O4' C1' N1 DT DT DT 2 2 2 N 2 7.56 1.20 119.70 127.26 A A A C3' O3' P DA DA DT 3 3 4 Y 2 3.34 0.30 108.30 111.64 A A A O4' C1' N1 DT DT DT 4 4 4 N 2 3.49 0.30 108.30 111.79 A A A O4' C1' N1 DC DC DC 8 8 8 N 2 2.60 0.30 108.30 110.90 B B B O4' C1' N9 DG DG DG 9 9 9 N 2 3.04 0.30 108.30 111.34 B B B O4' C1' N1 DT DT DT 10 10 10 N 2 5.13 0.30 108.30 113.43 B B B O4' C1' N1 DT DT DT 12 12 12 N 2 2.65 0.30 108.30 110.95 B B B O4' C1' N9 DA DA DA 15 15 15 N 2 3.03 0.30 108.30 111.33 B B B O4' C1' N1 DC DC DC 16 16 16 N 3 2.42 0.30 108.30 110.72 A A A O4' C1' N1 DT DT DT 2 2 2 N 3 1.82 0.30 108.30 110.12 A A A O4' C1' N9 DA DA DA 3 3 3 N 3 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DT DT DT 4 4 4 N 3 2.87 0.30 108.30 111.17 A A A O4' C1' N9 DA DA DA 7 7 7 N 3 2.34 0.30 108.30 110.64 A A A O4' C1' N1 DC DC DC 8 8 8 N 3 7.31 1.20 119.70 127.01 B B B C3' O3' P DT DT DA 10 10 11 Y 3 3.22 0.30 108.30 111.52 B B B O4' C1' N1 DT DT DT 12 12 12 N 3 2.75 0.30 108.30 111.05 B B B O4' C1' N9 DA DA DA 15 15 15 N 3 2.50 0.30 108.30 110.80 B B B O4' C1' N1 DC DC DC 16 16 16 N 4 2.24 0.30 108.30 110.54 A A A O4' C1' N1 DT DT DT 2 2 2 N 4 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DT DT DT 4 4 4 N 4 2.84 0.30 108.30 111.14 A A A O4' C1' N9 DA DA DA 7 7 7 N 4 2.56 0.30 108.30 110.86 A A A O4' C1' N1 DC DC DC 8 8 8 N 4 1.87 0.30 108.30 110.17 B B B O4' C1' N1 DT DT DT 10 10 10 N 4 7.22 1.20 119.70 126.92 B B B C3' O3' P DT DT DA 10 10 11 Y 4 2.92 0.30 108.30 111.22 B B B O4' C1' N1 DT DT DT 12 12 12 N 4 3.01 0.30 108.30 111.31 B B B O4' C1' N9 DA DA DA 15 15 15 N 4 2.41 0.30 108.30 110.71 B B B O4' C1' N1 DC DC DC 16 16 16 N 5 2.42 0.30 108.30 110.72 A A A O4' C1' N1 DT DT DT 2 2 2 N 5 7.50 1.20 119.70 127.20 A A A C3' O3' P DA DA DT 3 3 4 Y 5 3.29 0.30 108.30 111.59 A A A O4' C1' N9 DA DA DA 7 7 7 N 5 2.24 0.30 108.30 110.54 A A A O4' C1' N1 DC DC DC 8 8 8 N 5 7.40 1.20 119.70 127.10 B B B C3' O3' P DT DT DA 10 10 11 Y 5 2.77 0.30 108.30 111.07 B B B O4' C1' N9 DA DA DA 15 15 15 N 5 1.99 0.30 108.30 110.29 B B B O4' C1' N1 DC DC DC 16 16 16 N refinement AMBER SOLUTION STRUCTURE OF [D(GTATATAC)]2 VIA RESTRAINED MOLECULAR DYNAMICS SIMULATIONS WITH NUCLEAR MAGNETIC RESONANCE CONSTRAINTS DERIVED FROM RELAXATION MATRIX ANALYSIS OF TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT EXPERIMENTS 1 N N 1 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 B DA 15 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 B DA 15 B N6 DA 7 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 14 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 14 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 13 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 13 B N6 DA 5 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 12 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 12 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 11 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 11 B N6 DA 3 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 10 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 10 B O4 DT 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 DNA DNA 1D42 PDB 1 1D42 1 8 1D42 1 8 1D42 A 1 1 8 9 16 1D42 9 16 1D42 B 1 1 8 1 P 1