0.041754 0.000000 0.000000 0.000000 0.025648 0.000000 0.000000 0.000000 0.015342 0.00000 0.00000 0.00000 Quintana, J.R. Lipanov, A.A. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.950 38.990 65.180 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C25 H24 N6 O 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOECHST 33258 non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N O Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N N Y 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N N N 173 N C N 174 N C N 175 N N N 176 N C N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N doub Y 155 N sing Y 156 N sing N 157 N sing Y 158 N doub N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing N 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub Y 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N sing N 183 N sing Y 184 N doub Y 185 N sing Y 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing US Biochemistry BICHAW 0033 0006-2960 30 10294 10306 10.1021/bi00106a030 1718416 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 1991 UK Nucleic Acids Res. NARHAD 0389 0305-1048 16 2671 2690 The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG) 1988 UK J.Mol.Biol. JMOBAK 0070 0022-2836 196 257 271 Binding of Hoechst 33258 to the Minor Groove of B-DNA 1987 US J.Med.Chem. JMCMAR 0151 0022-2623 29 727 733 Isohelical Analysis of DNA Groove-Binding Drugs 1986 10.2210/pdb1d43/pdb pdb_00001d43 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE 1 syn non-polymer 18.015 water 67 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.08 40.77 VAPOR DIFFUSION, SITTING DROP 6.90 pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K 277.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 1.607 1 19 A 1 B 24 2.239 A_DC1:DG24_B 1 -17.157 0.480 0.349 -0.290 -2.300 1 19 A 2 B 23 6.883 A_DG2:DC23_B 2 -16.709 -0.684 0.355 -0.115 -3.387 1 19 A 3 B 22 0.145 A_DC3:DG22_B 3 -7.577 0.271 0.142 -0.015 17.386 1 19 A 4 B 21 -0.735 A_DG4:DC21_B 4 -5.842 -0.388 0.195 -0.012 8.137 1 20 A 5 B 20 6.455 A_DA5:DT20_B 5 -23.627 0.279 -0.122 -0.260 6.362 1 20 A 6 B 19 3.985 A_DA6:DT19_B 6 -20.001 0.157 0.251 -0.139 -3.931 1 20 A 7 B 18 4.345 A_DT7:DA18_B 7 -27.389 0.404 -0.090 -0.233 -6.690 1 20 A 8 B 17 3.668 A_DT8:DA17_B 8 -15.870 -0.471 -0.068 -0.260 -8.606 1 19 A 9 B 16 -5.884 A_DC9:DG16_B 9 -9.588 0.524 -0.077 -0.113 13.882 1 19 A 10 B 15 -2.951 A_DG10:DC15_B 10 5.399 0.136 0.334 -0.417 7.913 1 19 A 11 B 14 -9.717 A_DC11:DG14_B 11 -26.109 0.182 0.167 -0.352 10.868 1 19 A 12 B 13 -3.095 A_DG12:DC13_B 12 10.351 -0.390 -0.058 -0.424 3.318 29.684 A A 1 2 16.226 B B 24 23 3.380 8.209 0.017 0.238 AA_DC1DG2:DC23DG24_BB 1 -0.078 0.155 28.551 -1.339 -0.050 3.196 46.195 A A 2 3 -9.181 B B 23 22 3.319 -7.160 0.459 0.809 AA_DG2DC3:DG22DC23_BB 2 5.823 -7.467 45.314 1.646 -0.085 3.010 26.410 A A 3 4 22.998 B B 22 21 2.964 10.220 0.231 0.689 AA_DC3DG4:DC21DG22_BB 3 2.840 -6.390 24.221 -1.091 0.216 3.494 42.007 A A 4 5 3.378 B B 21 20 3.484 2.418 0.071 0.351 AA_DG4DA5:DT20DC21_BB 4 3.377 -4.717 41.811 0.222 0.276 3.001 37.750 A A 5 6 9.222 B B 20 19 3.114 5.929 -0.078 -0.423 AA_DA5DA6:DT19DT20_BB 5 -4.648 7.229 37.017 -1.377 -0.446 3.443 34.655 A A 6 7 4.284 B B 19 18 3.494 2.545 0.070 -0.429 AA_DA6DT7:DA18DT19_BB 6 3.657 -6.155 34.376 -1.137 0.480 3.256 32.322 A A 7 8 2.516 B B 18 17 3.265 1.400 -0.056 -0.095 AA_DT7DT8:DA17DA18_BB 7 0.848 -1.524 32.282 -0.417 0.249 3.534 40.767 A A 8 9 6.410 B B 17 16 3.494 4.457 -0.070 0.581 AA_DT8DC9:DG16DA17_BB 8 0.662 -0.952 40.527 0.304 0.179 3.094 27.172 A A 9 10 8.108 B B 16 15 2.964 3.779 0.119 1.608 AA_DC9DG10:DC15DG16_BB 9 -4.646 9.969 26.516 2.532 -1.350 3.277 42.477 A A 10 11 -15.686 B B 15 14 3.570 -11.236 -1.064 0.884 AA_DG10DC11:DG14DC15_BB 10 -2.140 2.988 40.976 2.437 1.237 3.464 38.521 A A 11 12 -14.387 B B 14 13 3.645 -9.376 1.345 0.940 AA_DC11DG12:DC13DG14_BB 11 5.095 -7.818 37.067 2.713 -1.339 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2011-08-24 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-06-04 REL REL MG MAGNESIUM ION HT 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOH water MO6 26 2 MG MG 26 A HT 25 3 HT HT 25 B HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 33 4 HOH HOH 33 A HOH 35 4 HOH HOH 35 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 42 4 HOH HOH 42 A HOH 44 4 HOH HOH 44 A HOH 46 4 HOH HOH 46 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 52 4 HOH HOH 52 A HOH 54 4 HOH HOH 54 A HOH 56 4 HOH HOH 56 A HOH 58 4 HOH HOH 58 A HOH 60 4 HOH HOH 60 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 66 4 HOH HOH 66 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 75 4 HOH HOH 75 A HOH 76 4 HOH HOH 76 A HOH 77 4 HOH HOH 77 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 84 4 HOH HOH 84 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A MO6 26 4 HOH HOH 89 A MO6 26 4 HOH HOH 90 A MO6 26 4 HOH HOH 91 A MO6 26 4 HOH HOH 93 A HOH 29 4 HOH HOH 29 B HOH 32 4 HOH HOH 32 B HOH 34 4 HOH HOH 34 B HOH 36 4 HOH HOH 36 B HOH 37 4 HOH HOH 37 B HOH 40 4 HOH HOH 40 B HOH 41 4 HOH HOH 41 B HOH 43 4 HOH HOH 43 B HOH 45 4 HOH HOH 45 B HOH 47 4 HOH HOH 47 B HOH 48 4 HOH HOH 48 B HOH 49 4 HOH HOH 49 B HOH 53 4 HOH HOH 53 B HOH 55 4 HOH HOH 55 B HOH 57 4 HOH HOH 57 B HOH 59 4 HOH HOH 59 B HOH 64 4 HOH HOH 64 B HOH 65 4 HOH HOH 65 B HOH 67 4 HOH HOH 67 B HOH 68 4 HOH HOH 68 B HOH 69 4 HOH HOH 69 B HOH 74 4 HOH HOH 74 B HOH 78 4 HOH HOH 78 B HOH 81 4 HOH HOH 81 B HOH 82 4 HOH HOH 82 B HOH 83 4 HOH HOH 83 B HOH 85 4 HOH HOH 85 B MO6 26 4 HOH HOH 88 B MO6 26 4 HOH HOH 92 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 89 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 90 E O HOH 1_555 91.9 A HOH 89 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 91 E O HOH 1_555 87.4 A HOH 90 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 91 E O HOH 1_555 177.5 A HOH 89 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 93 E O HOH 1_555 89.8 A HOH 90 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 93 E O HOH 1_555 92.9 A HOH 91 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 93 E O HOH 1_555 89.6 A HOH 89 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 88 F O HOH 1_555 177.0 A HOH 90 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 88 F O HOH 1_555 90.6 A HOH 91 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 88 F O HOH 1_555 90.2 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 88 F O HOH 1_555 88.3 A HOH 89 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 94.1 A HOH 90 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 91.3 A HOH 91 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 86.3 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 174.2 B HOH 88 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 87.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 7.13 1.10 109.80 116.93 A A A C5' C4' O4' DC DC DC 1 1 1 N 1 4.08 0.50 119.90 123.98 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -3.42 0.40 121.90 118.48 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 5.53 0.70 118.00 123.53 A A A N3 C4 N4 DC DC DC 1 1 1 N 1 -15.25 1.50 119.60 104.35 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 12.04 1.20 110.70 122.74 A A A O5' P OP2 DG DG DG 2 2 2 N 1 -11.68 1.50 119.60 107.92 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 12.59 1.20 110.70 123.29 A A A O5' P OP1 DC DC DC 3 3 3 N 1 15.68 1.60 120.90 136.58 A A A P O5' C5' DC DC DC 3 3 3 N 1 -4.58 0.40 104.50 99.92 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 2.47 0.40 120.30 122.77 A A A C6 N1 C2 DC DC DC 3 3 3 N 1 18.45 1.20 119.70 138.15 A A A C3' O3' P DC DC DG 3 3 4 Y 1 -7.43 0.90 105.70 98.27 A A A O5' P OP1 DG DG DG 4 4 4 N 1 9.43 1.20 110.70 120.13 A A A O5' P OP2 DG DG DG 4 4 4 N 1 -8.28 0.80 109.40 101.12 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 -6.02 0.80 102.40 96.38 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 4.33 0.60 118.60 122.93 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -3.62 0.50 129.30 125.68 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 16.39 1.20 119.70 136.09 A A A C3' O3' P DA DA DA 5 5 6 Y 1 -3.90 0.50 129.30 125.40 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 8.58 1.20 119.70 128.28 A A A C3' O3' P DA DA DT 6 6 7 Y 1 -5.49 0.80 109.40 103.91 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 -4.47 0.60 127.20 122.73 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 3.80 0.60 115.20 119.00 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 13.20 1.20 119.70 132.90 A A A C3' O3' P DT DT DT 7 7 8 Y 1 12.97 1.20 110.70 123.67 A A A O5' P OP2 DT DT DT 8 8 8 N 1 -5.10 0.60 127.20 122.10 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 3.83 0.60 115.20 119.03 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -4.68 0.60 119.90 115.22 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 20.69 1.20 119.70 140.39 A A A C3' O3' P DT DT DC 8 8 9 Y 1 3.29 0.50 121.00 124.29 A A A C5 C6 N1 DC DC DC 9 9 9 N 1 4.27 0.60 118.90 123.17 A A A N1 C2 O2 DC DC DC 9 9 9 N 1 -4.82 0.80 102.40 97.58 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 4.96 0.30 108.30 113.26 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -4.93 0.70 119.90 114.97 A A A N3 C2 N2 DG DG DG 10 10 10 N 1 -4.13 0.60 128.60 124.47 A A A C5 C6 O6 DG DG DG 10 10 10 N 1 14.95 1.20 110.70 125.65 A A A O5' P OP2 DC DC DC 11 11 11 N 1 -5.82 0.70 108.00 102.18 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 4.21 0.50 119.90 124.11 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 -3.29 0.40 121.90 118.61 B B B N3 C4 C5 DC DC DC 13 13 13 N 1 3.33 0.50 111.50 114.83 B B B C5 C6 N1 DG DG DG 14 14 14 N 1 8.06 1.20 110.70 118.76 B B B O5' P OP1 DC DC DC 15 15 15 N 1 -5.17 0.80 109.40 104.23 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 3.05 0.50 106.80 109.85 B B B O4' C1' C2' DC DC DC 15 15 15 N 1 -5.10 0.70 108.00 102.90 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 13.41 1.20 119.70 133.11 B B B C3' O3' P DC DC DG 15 15 16 Y 1 4.70 0.30 108.30 113.00 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 16.14 1.20 119.70 135.84 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -9.71 0.80 109.40 99.69 B B B O5' C5' C4' DA DA DA 17 17 17 N 1 3.58 0.30 108.30 111.88 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -9.89 1.50 119.60 109.71 B B B OP1 P OP2 DA DA DA 18 18 18 N 1 6.68 0.60 118.60 125.28 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -6.68 0.50 129.30 122.62 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 3.03 0.50 110.60 113.63 B B B C2 N3 C4 DA DA DA 18 18 18 N 1 -4.22 0.50 117.70 113.48 B B B C5 C6 N1 DA DA DA 18 18 18 N 1 13.72 1.20 119.70 133.42 B B B C3' O3' P DA DA DT 18 18 19 Y 1 1.87 0.30 108.30 110.17 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.98 0.60 127.20 122.22 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 -3.64 0.60 122.90 119.26 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 8.85 1.20 119.70 128.55 B B B C3' O3' P DT DT DC 20 20 21 Y 1 7.25 1.10 110.50 117.75 B B B O3' P OP1 DT DC DC 20 21 21 Y 1 -6.51 0.80 109.40 102.89 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 -6.72 0.70 108.00 101.28 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 3.46 0.50 119.90 123.36 B B B C2 N3 C4 DC DC DC 21 21 21 N 1 -3.37 0.40 121.90 118.53 B B B N3 C4 C5 DC DC DC 21 21 21 N 1 10.62 1.20 119.70 130.32 B B B C3' O3' P DC DC DG 21 21 22 Y 1 11.31 1.60 120.90 132.21 B B B P O5' C5' DG DG DG 22 22 22 N 1 -6.06 0.80 102.40 96.34 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 8.80 1.20 110.70 119.50 B B B O5' P OP1 DC DC DC 23 23 23 N 1 7.76 1.20 115.70 123.46 B B B C5' C4' C3' DC DC DC 23 23 23 N 1 -9.78 1.50 119.60 109.82 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 4.54 0.30 108.30 112.84 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 3.25 0.50 111.50 114.75 B B B C5 C6 N1 DG DG DG 24 24 24 N 1 -4.71 0.60 119.90 115.19 B B B N1 C6 O6 DG DG DG 24 24 24 N 1 A A O4' C4' DC DC 1 1 -0.063 0.010 1.446 1.383 N 1 B B O4' C4' DC DC 21 21 -0.068 0.010 1.446 1.378 N 1 A B O O HOH HOH 31 85 1.87 1_555 1_655 1 A B C5' O DG HOH 12 55 1.90 1_555 2_664 1 B B N3 O3' DG DG 16 24 2.10 1_555 2_664 0.1570000 2.000 8.000 2540 1 2.000 TR isotropic TR isotropic 2.000 8.000 67 586 33 486 0 fix fix refinement NUCLSQ DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 1.928 A MG 26 C MG MG 1_555 A HOH 89 E O HOH 1_555 metalc 1.951 A MG 26 C MG MG 1_555 A HOH 90 E O HOH 1_555 metalc 2.029 A MG 26 C MG MG 1_555 A HOH 91 E O HOH 1_555 metalc 1.958 A MG 26 C MG MG 1_555 A HOH 93 E O HOH 1_555 metalc 1.985 A MG 26 C MG MG 1_555 B HOH 88 F O HOH 1_555 metalc 1.980 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D43 PDB 1 1D43 1 12 1D43 1 12 1D43 A 1 1 12 13 24 1D43 13 24 1D43 B 1 1 12 BINDING SITE FOR RESIDUE HT B 25 B HT 25 Software 9 BINDING SITE FOR RESIDUE MG A 26 A MG 26 Software 6 A DA 6 A DA 6 9 1_555 A DT 7 A DT 7 9 1_555 A DT 8 A DT 8 9 1_555 A DC 9 A DC 9 9 1_555 B DA 18 B DA 6 9 1_555 B DT 19 B DT 7 9 1_555 B DT 20 B DT 8 9 1_555 B DC 21 B DC 9 9 1_555 B HOH 83 F HOH 9 1_555 A HOH 89 E HOH 6 1_555 A HOH 90 E HOH 6 1_555 A HOH 91 E HOH 6 1_555 A HOH 93 E HOH 6 1_555 B HOH 88 F HOH 6 1_555 B HOH 92 F HOH 6 1_555 19 P 21 21 21