0.041754 0.000000 0.000000 0.000000 0.025648 0.000000 0.000000 0.000000 0.015342 0.00000 0.00000 0.00000 Quintana, J.R. Lipanov, A.A. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.950 38.990 65.180 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C25 H24 N6 O 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOECHST 33258 non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N O Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N N Y 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N N N 173 N C N 174 N C N 175 N N N 176 N C N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N doub Y 155 N sing Y 156 N sing N 157 N sing Y 158 N doub N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing N 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub Y 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N sing N 183 N sing Y 184 N doub Y 185 N sing Y 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing US Biochemistry BICHAW 0033 0006-2960 30 10294 10306 10.1021/bi00106a030 1718416 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 1991 UK Nucleic Acids Res. NARHAD 0389 0305-1048 16 2671 2690 The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG) 1988 UK J.Mol.Biol. JMOBAK 0070 0022-2836 196 257 271 Binding of Hoechst 33258 to the Minor Groove of B-DNA 1987 US J.Med.Chem. JMCMAR 0151 0022-2623 29 727 733 Isohelical Analysis of DNA Groove-Binding Drugs 1986 10.2210/pdb1d44/pdb pdb_00001d44 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE 1 syn non-polymer 18.015 water 71 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.08 40.77 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 -1.435 1 19 A 1 B 24 2.373 A_DC1:DG24_B 1 -17.746 0.214 0.472 -0.185 0.235 1 19 A 2 B 23 6.049 A_DG2:DC23_B 2 -16.695 -0.649 0.306 -0.096 -3.323 1 19 A 3 B 22 0.449 A_DC3:DG22_B 3 -8.235 0.250 0.180 -0.107 21.469 1 19 A 4 B 21 -0.386 A_DG4:DC21_B 4 -5.496 -0.385 0.211 0.031 7.703 1 20 A 5 B 20 9.958 A_DA5:DT20_B 5 -25.557 0.440 0.052 -0.103 3.983 1 20 A 6 B 19 0.942 A_DA6:DT19_B 6 -18.487 0.049 0.170 -0.301 -2.815 1 20 A 7 B 18 3.070 A_DT7:DA18_B 7 -27.245 0.282 -0.235 -0.257 -8.144 1 20 A 8 B 17 4.383 A_DT8:DA17_B 8 -14.518 -0.375 -0.039 -0.244 -7.984 1 19 A 9 B 16 -5.733 A_DC9:DG16_B 9 -9.219 0.258 -0.179 -0.176 12.905 1 19 A 10 B 15 -3.629 A_DG10:DC15_B 10 5.028 0.207 0.333 -0.357 10.192 1 19 A 11 B 14 -8.795 A_DC11:DG14_B 11 -25.800 0.219 0.298 -0.331 11.666 1 19 A 12 B 13 -1.261 A_DG12:DC13_B 12 6.087 -0.601 0.055 -0.402 3.239 30.248 A A 1 2 14.371 B B 24 23 3.272 7.426 -0.041 0.264 AA_DC1DG2:DC23DG24_BB 1 -0.002 0.003 29.343 -1.015 0.078 3.286 45.881 A A 2 3 -9.608 B B 23 22 3.410 -7.447 0.482 0.740 AA_DG2DC3:DG22DC23_BB 2 4.896 -6.316 45.053 1.615 -0.180 2.904 27.608 A A 3 4 21.279 B B 22 21 2.830 9.911 0.232 0.710 AA_DC3DG4:DC21DG22_BB 3 3.320 -7.129 25.589 -0.712 0.251 3.632 43.006 A A 4 5 2.017 B B 21 20 3.617 1.477 0.178 0.414 AA_DG4DA5:DT20DC21_BB 4 2.810 -3.837 42.894 0.402 0.065 3.065 34.994 A A 5 6 9.936 B B 20 19 3.157 5.934 -0.386 -0.443 AA_DA5DA6:DT19DT20_BB 5 -4.219 7.066 34.252 -1.596 0.031 3.329 35.791 A A 6 7 3.972 B B 19 18 3.380 2.432 0.176 -0.550 AA_DA6DT7:DA18DT19_BB 6 4.945 -8.076 35.378 -1.257 0.447 3.381 33.225 A A 7 8 3.516 B B 18 17 3.388 2.009 0.066 -0.010 AA_DT7DT8:DA17DA18_BB 7 -0.167 0.292 33.166 -0.365 -0.145 3.403 38.460 A A 8 9 7.204 B B 17 16 3.374 4.733 -0.202 0.525 AA_DT8DC9:DG16DA17_BB 8 1.370 -2.085 38.155 0.186 0.483 3.168 28.342 A A 9 10 9.708 B B 16 15 3.022 4.701 0.096 1.626 AA_DC9DG10:DC15DG16_BB 9 -5.677 11.724 27.386 2.274 -1.460 3.264 42.694 A A 10 11 -15.858 B B 15 14 3.510 -11.397 -1.058 0.855 AA_DG10DC11:DG14DC15_BB 10 -4.568 6.357 40.970 2.386 0.968 3.427 38.497 A A 11 12 -17.601 B B 14 13 3.694 -11.404 1.241 0.861 AA_DC11DG12:DC13DG14_BB 11 5.496 -8.482 36.430 2.892 -1.117 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2011-08-24 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-06-04 REL MG MAGNESIUM ION HT 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOH water MO6 26 2 MG MG 26 A HT 25 3 HT HT 25 B HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 33 4 HOH HOH 33 A HOH 35 4 HOH HOH 35 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 42 4 HOH HOH 42 A HOH 44 4 HOH HOH 44 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 55 4 HOH HOH 55 A HOH 57 4 HOH HOH 57 A HOH 59 4 HOH HOH 59 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 65 4 HOH HOH 65 A HOH 67 4 HOH HOH 67 A HOH 68 4 HOH HOH 68 A HOH 69 4 HOH HOH 69 A HOH 70 4 HOH HOH 70 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 76 4 HOH HOH 76 A HOH 78 4 HOH HOH 78 A HOH 80 4 HOH HOH 80 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 89 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A MO6 26 4 HOH HOH 93 A MO6 26 4 HOH HOH 94 A HOH 29 4 HOH HOH 29 B HOH 32 4 HOH HOH 32 B HOH 34 4 HOH HOH 34 B HOH 36 4 HOH HOH 36 B HOH 37 4 HOH HOH 37 B HOH 40 4 HOH HOH 40 B HOH 41 4 HOH HOH 41 B HOH 43 4 HOH HOH 43 B HOH 45 4 HOH HOH 45 B HOH 46 4 HOH HOH 46 B HOH 47 4 HOH HOH 47 B HOH 48 4 HOH HOH 48 B HOH 49 4 HOH HOH 49 B HOH 54 4 HOH HOH 54 B HOH 56 4 HOH HOH 56 B HOH 58 4 HOH HOH 58 B HOH 60 4 HOH HOH 60 B HOH 64 4 HOH HOH 64 B HOH 66 4 HOH HOH 66 B HOH 71 4 HOH HOH 71 B HOH 74 4 HOH HOH 74 B HOH 75 4 HOH HOH 75 B HOH 77 4 HOH HOH 77 B HOH 79 4 HOH HOH 79 B HOH 81 4 HOH HOH 81 B HOH 82 4 HOH HOH 82 B HOH 83 4 HOH HOH 83 B HOH 84 4 HOH HOH 84 B HOH 85 4 HOH HOH 85 B MO6 26 4 HOH HOH 92 B MO6 26 4 HOH HOH 95 B MO6 26 4 HOH HOH 96 B MO6 26 4 HOH HOH 97 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 94 E O HOH 1_555 89.4 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 177.4 A HOH 94 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 91.0 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 95 F O HOH 1_555 87.8 A HOH 94 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 95 F O HOH 1_555 176.8 B HOH 92 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 95 F O HOH 1_555 91.8 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 96 F O HOH 1_555 92.8 A HOH 94 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 96 F O HOH 1_555 92.3 B HOH 92 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 96 F O HOH 1_555 89.8 B HOH 95 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 96 F O HOH 1_555 86.3 A HOH 93 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 88.1 A HOH 94 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 91.2 B HOH 92 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 89.3 B HOH 95 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 90.3 B HOH 96 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 176.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 10.14 1.10 109.80 119.94 A A A C5' C4' O4' DC DC DC 1 1 1 N 1 3.26 0.50 119.90 123.16 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 4.74 0.70 118.00 122.74 A A A N3 C4 N4 DC DC DC 1 1 1 N 1 -12.23 1.50 119.60 107.37 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 7.82 1.20 110.70 118.52 A A A O5' P OP2 DG DG DG 2 2 2 N 1 -5.19 0.80 109.40 104.21 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -5.77 0.80 102.40 96.63 A A A C3' C2' C1' DG DG DG 2 2 2 N 1 -10.90 1.50 119.60 108.70 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 13.41 1.20 110.70 124.11 A A A O5' P OP1 DC DC DC 3 3 3 N 1 13.85 1.60 120.90 134.75 A A A P O5' C5' DC DC DC 3 3 3 N 1 -4.55 0.40 104.50 99.95 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 16.21 1.20 119.70 135.91 A A A C3' O3' P DC DC DG 3 3 4 Y 1 10.45 1.20 110.70 121.15 A A A O5' P OP2 DG DG DG 4 4 4 N 1 -6.79 0.80 109.40 102.61 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 -4.82 0.80 102.40 97.58 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 -4.22 0.60 128.60 124.38 A A A C5 C6 O6 DG DG DG 4 4 4 N 1 3.15 0.30 108.30 111.45 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 4.30 0.60 118.60 122.90 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -4.28 0.50 129.30 125.02 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 13.11 1.20 119.70 132.81 A A A C3' O3' P DA DA DA 5 5 6 Y 1 -4.43 0.50 129.30 124.87 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 4.24 0.60 118.60 122.84 A A A N1 C6 N6 DA DA DA 6 6 6 N 1 10.60 1.20 119.70 130.30 A A A C3' O3' P DA DA DT 6 6 7 Y 1 7.34 1.20 110.70 118.04 A A A O5' P OP2 DT DT DT 7 7 7 N 1 -4.68 0.60 127.20 122.52 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.07 0.60 115.20 119.27 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 16.98 1.20 119.70 136.68 A A A C3' O3' P DT DT DT 7 7 8 Y 1 8.12 1.20 110.70 118.82 A A A O5' P OP2 DT DT DT 8 8 8 N 1 -4.57 0.70 108.00 103.43 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 -5.33 0.60 127.20 121.87 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 3.95 0.60 115.20 119.15 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -3.64 0.60 119.90 116.26 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 17.92 1.20 119.70 137.62 A A A C3' O3' P DT DT DC 8 8 9 Y 1 3.96 0.50 119.90 123.86 A A A C2 N3 C4 DC DC DC 9 9 9 N 1 3.18 0.50 121.00 124.18 A A A C5 C6 N1 DC DC DC 9 9 9 N 1 4.61 0.60 118.90 123.51 A A A N1 C2 O2 DC DC DC 9 9 9 N 1 10.30 1.20 119.70 130.00 A A A C3' O3' P DC DC DG 9 9 10 Y 1 3.13 0.30 108.30 111.43 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -5.15 0.70 119.90 114.75 A A A N3 C2 N2 DG DG DG 10 10 10 N 1 12.44 1.20 110.70 123.14 A A A O5' P OP2 DC DC DC 11 11 11 N 1 -5.42 0.70 108.00 102.58 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 6.41 0.30 108.30 114.71 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 4.85 0.50 119.90 124.75 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 -3.10 0.40 121.90 118.80 B B B N3 C4 C5 DC DC DC 13 13 13 N 1 3.03 0.50 121.00 124.03 B B B C5 C6 N1 DC DC DC 13 13 13 N 1 3.78 0.50 111.50 115.28 B B B C5 C6 N1 DG DG DG 14 14 14 N 1 -5.29 0.70 119.90 114.61 B B B N3 C2 N2 DG DG DG 14 14 14 N 1 7.48 1.20 119.70 127.18 B B B C3' O3' P DG DG DC 14 14 15 Y 1 -10.59 1.50 119.60 109.01 B B B OP1 P OP2 DC DC DC 15 15 15 N 1 8.34 1.20 110.70 119.04 B B B O5' P OP1 DC DC DC 15 15 15 N 1 -5.37 0.80 109.40 104.03 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 3.79 0.50 106.80 110.59 B B B O4' C1' C2' DC DC DC 15 15 15 N 1 -4.54 0.70 108.00 103.46 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 12.98 1.20 119.70 132.68 B B B C3' O3' P DC DC DG 15 15 16 Y 1 -11.42 1.50 119.60 108.18 B B B OP1 P OP2 DG DG DG 16 16 16 N 1 5.69 0.30 108.30 113.99 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 15.17 1.20 119.70 134.87 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -7.54 0.80 109.40 101.86 B B B O5' C5' C4' DA DA DA 17 17 17 N 1 3.78 0.30 108.30 112.08 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -9.89 1.50 119.60 109.71 B B B OP1 P OP2 DA DA DA 18 18 18 N 1 2.57 0.30 108.30 110.87 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 6.60 0.60 118.60 125.20 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -6.05 0.50 129.30 123.25 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 -3.89 0.50 117.70 113.81 B B B C5 C6 N1 DA DA DA 18 18 18 N 1 4.32 0.60 118.60 122.92 B B B N1 C6 N6 DA DA DA 18 18 18 N 1 13.54 1.20 119.70 133.24 B B B C3' O3' P DA DA DT 18 18 19 Y 1 -4.66 0.60 127.20 122.54 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 4.16 0.60 115.20 119.36 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 4.24 0.60 119.00 123.24 B B B C4 C5 C7 DT DT DT 19 19 19 N 1 -3.66 0.60 122.90 119.24 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 -7.08 0.80 109.40 102.32 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 -3.48 0.40 121.90 118.42 B B B N3 C4 C5 DC DC DC 21 21 21 N 1 13.25 1.20 119.70 132.95 B B B C3' O3' P DC DC DG 21 21 22 Y 1 -5.08 0.80 102.40 97.32 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 8.69 1.20 110.70 119.39 B B B O5' P OP1 DC DC DC 23 23 23 N 1 8.71 1.20 115.70 124.41 B B B C5' C4' C3' DC DC DC 23 23 23 N 1 -11.01 1.50 119.60 108.59 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 7.84 1.20 115.70 123.54 B B B C5' C4' C3' DG DG DG 24 24 24 N 1 5.27 0.30 108.30 113.57 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 3.66 0.50 111.50 115.16 B B B C5 C6 N1 DG DG DG 24 24 24 N 1 -5.94 0.60 119.90 113.96 B B B N1 C6 O6 DG DG DG 24 24 24 N 1 A A O3' P DT DT 7 8 -0.100 0.012 1.607 1.507 Y 1 B B O3' P DC DG 15 16 -0.074 0.012 1.607 1.533 Y 1 B B C6 N1 DG DG 16 16 -0.043 0.007 1.391 1.348 N 1 B B O4' C4' DA DA 17 17 -0.062 0.010 1.446 1.384 N 1 B B O4' C4' DC DC 21 21 -0.066 0.010 1.446 1.380 N 1 A B O O HOH HOH 31 85 1.87 1_555 1_655 1 A B C5' O DG HOH 12 56 1.98 1_555 2_664 1 B B N3 O3' DG DG 16 24 2.09 1_555 2_664 0.1570000 2.000 8.000 2540 1 2.000 TR isotropic TR isotropic 2.000 8.000 71 590 33 486 0 fix fix refinement NUCLSQ DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 1.982 A MG 26 C MG MG 1_555 A HOH 93 E O HOH 1_555 metalc 1.961 A MG 26 C MG MG 1_555 A HOH 94 E O HOH 1_555 metalc 1.939 A MG 26 C MG MG 1_555 B HOH 92 F O HOH 1_555 metalc 2.024 A MG 26 C MG MG 1_555 B HOH 95 F O HOH 1_555 metalc 1.966 A MG 26 C MG MG 1_555 B HOH 96 F O HOH 1_555 metalc 1.987 A MG 26 C MG MG 1_555 B HOH 97 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D44 PDB 1 1D44 1 12 1D44 1 12 1D44 A 1 1 12 13 24 1D44 13 24 1D44 B 1 1 12 BINDING SITE FOR RESIDUE HT B 25 B HT 25 Software 9 BINDING SITE FOR RESIDUE MG A 26 A MG 26 Software 6 A DA 6 A DA 6 9 1_555 A DT 7 A DT 7 9 1_555 A DT 8 A DT 8 9 1_555 A DC 9 A DC 9 9 1_555 A HOH 87 E HOH 9 1_555 B DA 18 B DA 6 9 1_555 B DT 19 B DT 7 9 1_555 B DT 20 B DT 8 9 1_555 B DC 21 B DC 9 9 1_555 A HOH 93 E HOH 6 1_555 A HOH 94 E HOH 6 1_555 B HOH 92 F HOH 6 1_555 B HOH 95 F HOH 6 1_555 B HOH 96 F HOH 6 1_555 B HOH 97 F HOH 6 1_555 19 P 21 21 21