0.041859 0.000000 0.000000 0.000000 0.025961 0.000000 0.000000 0.000000 0.015074 0.00000 0.00000 0.00000 Quintana, J.R. Lipanov, A.A. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.890 38.520 66.340 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C25 H24 N6 O 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOECHST 33258 non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N O Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N N Y 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N N N 173 N C N 174 N C N 175 N N N 176 N C N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N doub Y 155 N sing Y 156 N sing N 157 N sing Y 158 N doub N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing N 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub Y 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N sing N 183 N sing Y 184 N doub Y 185 N sing Y 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing US Biochemistry BICHAW 0033 0006-2960 30 10294 10306 10.1021/bi00106a030 1718416 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 1991 UK Nucleic Acids Res. NARHAD 0389 0305-1048 16 2671 2690 The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG) 1988 UK J.Mol.Biol. JMOBAK 0070 0022-2836 196 257 271 Binding of Hoechst 33258 to the Minor Groove of B-DNA 1987 US J.Med.Chem. JMCMAR 0151 0022-2623 29 727 733 Isohelical Analysis of DNA Groove-Binding Drugs 1986 10.2210/pdb1d45/pdb pdb_00001d45 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 248.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 100 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.08 40.95 VAPOR DIFFUSION, SITTING DROP 6.90 pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K 277.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 -2.981 1 19 A 1 B 24 -6.362 A_DC1:DG24_B 1 -15.200 0.109 0.071 -0.169 8.190 1 19 A 2 B 23 -1.741 A_DG2:DC23_B 2 -3.825 -0.005 0.455 -0.183 -2.010 1 19 A 3 B 22 -1.193 A_DC3:DG22_B 3 -7.389 0.242 0.525 -0.328 14.243 1 19 A 4 B 21 -7.461 A_DG4:DC21_B 4 -14.845 -0.182 -0.009 -0.209 11.520 1 20 A 5 B 20 1.382 A_DA5:DT20_B 5 -17.341 0.245 0.054 -0.293 1.603 1 20 A 6 B 19 8.491 A_DA6:DT19_B 6 -21.545 -0.298 -0.170 -0.016 -2.545 1 20 A 7 B 18 5.405 A_DT7:DA18_B 7 -20.295 0.132 -0.136 -0.012 -12.766 1 20 A 8 B 17 0.194 A_DT8:DA17_B 8 -11.887 -0.507 -0.015 -0.302 -5.737 1 19 A 9 B 16 2.607 A_DC9:DG16_B 9 -8.540 0.678 0.008 0.128 8.815 1 19 A 10 B 15 -4.082 A_DG10:DC15_B 10 3.303 0.030 -0.049 -0.397 2.977 1 19 A 11 B 14 -5.649 A_DC11:DG14_B 11 -21.859 0.084 0.672 -0.251 2.594 1 19 A 12 B 13 -3.636 A_DG12:DC13_B 12 21.027 -0.579 -0.098 -0.302 3.095 33.204 A A 1 2 14.263 B B 24 23 3.177 8.059 -0.407 -0.070 AA_DC1DG2:DC23DG24_BB 1 -3.492 6.181 32.052 -1.441 0.141 3.532 41.332 A A 2 3 -4.845 B B 23 22 3.542 -3.415 0.690 0.363 AA_DG2DC3:DG22DC23_BB 2 2.100 -2.979 41.145 0.911 -0.734 3.140 29.220 A A 3 4 12.839 B B 22 21 3.135 6.399 -0.291 0.757 AA_DC3DG4:DC21DG22_BB 3 4.658 -9.344 28.150 0.141 1.566 3.185 40.049 A A 4 5 5.002 B B 21 20 3.196 3.421 0.219 -0.014 AA_DG4DA5:DT20DC21_BB 4 0.214 -0.312 39.908 -0.403 -0.295 3.325 34.573 A A 5 6 11.049 B B 20 19 3.458 6.526 0.182 -0.434 AA_DA5DA6:DT19DT20_BB 5 1.710 -2.895 33.928 -1.785 -0.030 3.329 34.876 A A 6 7 2.782 B B 19 18 3.352 1.666 -0.129 -0.470 AA_DA6DT7:DA18DT19_BB 6 -1.207 2.014 34.817 -1.042 0.028 3.461 34.530 A A 7 8 3.415 B B 18 17 3.469 2.026 0.007 -0.029 AA_DT7DT8:DA17DA18_BB 7 0.485 -0.817 34.469 -0.382 0.068 3.343 39.984 A A 8 9 0.433 B B 17 16 3.330 0.296 0.216 0.860 AA_DT8DC9:DG16DA17_BB 8 2.560 -3.746 39.904 1.222 -0.015 3.595 24.215 A A 9 10 16.107 B B 16 15 3.167 6.672 -0.226 2.010 AA_DC9DG10:DC15DG16_BB 9 -0.027 0.064 23.291 2.559 0.531 3.458 45.151 A A 10 11 -13.470 B B 15 14 3.725 -10.239 -0.753 1.109 AA_DG10DC11:DG14DC15_BB 10 -5.264 6.925 43.733 2.469 0.455 3.203 36.162 A A 11 12 -18.953 B B 14 13 3.462 -11.506 1.372 0.893 AA_DC11DG12:DC13DG14_BB 11 6.654 -10.960 33.707 3.154 -1.219 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2011-08-24 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-06-04 REL REL HT 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE MG MAGNESIUM ION HOH water HT 25 2 HT HT 25 A MO6 26 3 MG MG 26 A HOH 29 4 HOH HOH 29 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 49 4 HOH HOH 49 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 55 4 HOH HOH 55 A HOH 56 4 HOH HOH 56 A HOH 57 4 HOH HOH 57 A HOH 60 4 HOH HOH 60 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 66 4 HOH HOH 66 A HOH 67 4 HOH HOH 67 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 74 4 HOH HOH 74 A HOH 75 4 HOH HOH 75 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 86 4 HOH HOH 86 A HOH 88 4 HOH HOH 88 A HOH 94 4 HOH HOH 94 A HOH 95 4 HOH HOH 95 A HOH 96 4 HOH HOH 96 A HOH 97 4 HOH HOH 97 A HOH 99 4 HOH HOH 99 A HOH 102 4 HOH HOH 102 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 107 4 HOH HOH 107 A HOH 110 4 HOH HOH 110 A HOH 112 4 HOH HOH 112 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 120 4 HOH HOH 120 A MO6 26 4 HOH HOH 121 A MO6 26 4 HOH HOH 122 A MO6 26 4 HOH HOH 123 A MO6 26 4 HOH HOH 125 A MO6 26 4 HOH HOH 126 A HOH 27 4 HOH HOH 27 B HOH 28 4 HOH HOH 28 B HOH 30 4 HOH HOH 30 B HOH 31 4 HOH HOH 31 B HOH 32 4 HOH HOH 32 B HOH 33 4 HOH HOH 33 B HOH 34 4 HOH HOH 34 B HOH 43 4 HOH HOH 43 B HOH 47 4 HOH HOH 47 B HOH 48 4 HOH HOH 48 B HOH 50 4 HOH HOH 50 B HOH 51 4 HOH HOH 51 B HOH 54 4 HOH HOH 54 B HOH 58 4 HOH HOH 58 B HOH 59 4 HOH HOH 59 B HOH 65 4 HOH HOH 65 B HOH 68 4 HOH HOH 68 B HOH 69 4 HOH HOH 69 B HOH 73 4 HOH HOH 73 B HOH 76 4 HOH HOH 76 B HOH 77 4 HOH HOH 77 B HOH 78 4 HOH HOH 78 B HOH 81 4 HOH HOH 81 B HOH 84 4 HOH HOH 84 B HOH 85 4 HOH HOH 85 B HOH 87 4 HOH HOH 87 B HOH 89 4 HOH HOH 89 B HOH 90 4 HOH HOH 90 B HOH 91 4 HOH HOH 91 B HOH 92 4 HOH HOH 92 B HOH 93 4 HOH HOH 93 B HOH 98 4 HOH HOH 98 B HOH 100 4 HOH HOH 100 B HOH 101 4 HOH HOH 101 B HOH 103 4 HOH HOH 103 B HOH 106 4 HOH HOH 106 B HOH 108 4 HOH HOH 108 B HOH 109 4 HOH HOH 109 B HOH 111 4 HOH HOH 111 B HOH 113 4 HOH HOH 113 B HOH 114 4 HOH HOH 114 B HOH 119 4 HOH HOH 119 B MO6 26 4 HOH HOH 124 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 121 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 122 E O HOH 1_555 175.3 A HOH 121 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 123 E O HOH 1_555 94.4 A HOH 122 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 123 E O HOH 1_555 90.2 A HOH 121 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 125 E O HOH 1_555 92.0 A HOH 122 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 125 E O HOH 1_555 89.1 A HOH 123 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 125 E O HOH 1_555 91.6 A HOH 121 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 126 E O HOH 1_555 91.8 A HOH 122 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 126 E O HOH 1_555 86.6 A HOH 123 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 126 E O HOH 1_555 94.0 A HOH 125 E O HOH 1_555 A MG 26 D MG MG 1_555 A HOH 126 E O HOH 1_555 173.0 A HOH 121 E O HOH 1_555 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 87.9 A HOH 122 E O HOH 1_555 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 87.6 A HOH 123 E O HOH 1_555 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 174.3 A HOH 125 E O HOH 1_555 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 83.1 A HOH 126 E O HOH 1_555 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 91.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -6.20 0.80 105.90 99.70 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 -2.42 0.40 121.90 119.48 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 7.58 1.10 110.50 118.08 A A A O3' P OP1 DC DG DG 1 2 2 Y 1 -8.32 0.80 109.40 101.08 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -6.61 0.70 108.00 101.39 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.37 0.50 111.50 114.87 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 18.63 1.20 119.70 138.33 A A A C3' O3' P DG DG DC 2 2 3 Y 1 -9.96 1.50 119.60 109.64 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 -14.10 1.50 119.60 105.50 A A A OP1 P OP2 DG DG DG 4 4 4 N 1 5.51 0.30 108.30 113.81 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 3.20 0.50 111.50 114.70 A A A C5 C6 N1 DG DG DG 4 4 4 N 1 14.83 1.20 119.70 134.53 A A A C3' O3' P DG DG DA 4 4 5 Y 1 4.10 0.60 118.60 122.70 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -3.96 0.50 117.70 113.74 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 4.28 0.60 118.60 122.88 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 16.73 1.20 119.70 136.43 A A A C3' O3' P DA DA DA 5 5 6 Y 1 -6.00 0.80 109.40 103.40 A A A O5' C5' C4' DA DA DA 6 6 6 N 1 18.77 1.60 120.90 139.67 A A A P O5' C5' DA DA DA 6 6 6 N 1 -4.87 0.70 108.00 103.13 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 3.85 0.60 118.60 122.45 A A A N1 C6 N6 DA DA DA 6 6 6 N 1 9.51 1.20 119.70 129.21 A A A C3' O3' P DA DA DT 6 6 7 Y 1 -7.14 1.00 110.10 102.96 A A A C1' O4' C4' DT DT DT 7 7 7 N 1 -4.10 0.60 127.20 123.10 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.23 0.60 115.20 119.43 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 15.82 1.20 119.70 135.52 A A A C3' O3' P DT DT DT 7 7 8 Y 1 -6.35 0.80 109.40 103.05 A A A O5' C5' C4' DT DT DT 8 8 8 N 1 -4.85 0.60 127.20 122.35 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 3.66 0.60 115.20 118.86 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -3.76 0.60 119.90 116.14 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 -3.71 0.60 122.90 119.19 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 19.92 1.20 119.70 139.62 A A A C3' O3' P DT DT DC 8 8 9 Y 1 -9.33 1.50 119.60 110.27 A A A OP1 P OP2 DC DC DC 9 9 9 N 1 -4.92 0.80 109.40 104.48 A A A O5' C5' C4' DC DC DC 9 9 9 N 1 11.47 1.20 119.70 131.17 A A A C3' O3' P DC DC DG 9 9 10 Y 1 6.07 0.30 108.30 114.37 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 8.82 1.20 119.70 128.52 A A A C3' O3' P DG DG DC 10 10 11 Y 1 -5.35 0.80 109.40 104.05 A A A O5' C5' C4' DC DC DC 11 11 11 N 1 15.79 1.20 119.70 135.49 A A A C3' O3' P DC DC DG 11 11 12 Y 1 -5.49 0.80 109.40 103.91 A A A O5' C5' C4' DG DG DG 12 12 12 N 1 2.99 0.30 108.30 111.29 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 -5.78 0.70 108.00 102.22 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 8.92 1.20 110.70 119.62 B B B O5' P OP2 DG DG DG 16 16 16 N 1 1.98 0.30 108.30 110.28 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 4.49 0.60 118.60 123.09 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -4.25 0.50 129.30 125.05 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 -3.62 0.50 117.70 114.08 B B B C5 C6 N1 DA DA DA 17 17 17 N 1 8.34 1.20 119.70 128.04 B B B C3' O3' P DA DA DA 17 17 18 Y 1 -4.95 0.80 109.40 104.45 B B B O5' C5' C4' DA DA DA 18 18 18 N 1 2.41 0.30 108.30 110.71 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 3.67 0.60 118.60 122.27 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -4.02 0.50 129.30 125.28 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 -4.95 0.60 127.20 122.25 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 4.14 0.60 115.20 119.34 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 9.65 1.20 119.70 129.35 B B B C3' O3' P DT DT DT 19 19 20 Y 1 -4.95 0.70 108.00 103.05 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -4.90 0.60 127.20 122.30 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 3.66 0.60 115.20 118.86 B B B N3 C4 C5 DT DT DT 20 20 20 N 1 15.55 1.20 119.70 135.25 B B B C3' O3' P DT DT DC 20 20 21 Y 1 11.52 1.60 120.90 132.42 B B B P O5' C5' DC DC DC 21 21 21 N 1 -2.72 0.40 121.90 119.18 B B B N3 C4 C5 DC DC DC 21 21 21 N 1 12.01 1.20 119.70 131.71 B B B C3' O3' P DC DC DG 21 21 22 Y 1 -11.10 1.50 119.60 108.50 B B B OP1 P OP2 DG DG DG 22 22 22 N 1 11.85 1.60 120.90 132.75 B B B P O5' C5' DG DG DG 22 22 22 N 1 -5.89 0.80 102.40 96.51 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 -6.75 0.80 105.90 99.15 B B B O4' C1' C2' DG DG DG 22 22 22 N 1 2.90 0.30 108.30 111.20 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 8.52 1.20 119.70 128.22 B B B C3' O3' P DC DC DG 23 23 24 Y 1 6.39 0.30 108.30 114.69 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 3.34 0.50 111.50 114.84 B B B C5 C6 N1 DG DG DG 24 24 24 N 1 A A P O5' DA DA 5 5 0.068 0.010 1.593 1.661 N 1 A A C8 O DG HOH 12 45 1.95 1_555 2_664 1 A A N7 O DG HOH 12 45 2.04 1_555 2_664 1 A B OP1 O DC HOH 3 47 2.12 1_555 2_665 1 A A N9 O DG HOH 12 45 2.18 1_555 2_664 0.1520000 1.900 8.000 2873 1 2.000 TR isotropic TR isotropic 1.900 8.000 100 619 33 486 0 fix fix refinement NUCLSQ DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 1.930 A MG 26 D MG MG 1_555 A HOH 121 E O HOH 1_555 metalc 2.054 A MG 26 D MG MG 1_555 A HOH 122 E O HOH 1_555 metalc 1.931 A MG 26 D MG MG 1_555 A HOH 123 E O HOH 1_555 metalc 2.016 A MG 26 D MG MG 1_555 A HOH 125 E O HOH 1_555 metalc 1.962 A MG 26 D MG MG 1_555 A HOH 126 E O HOH 1_555 metalc 2.059 A MG 26 D MG MG 1_555 B HOH 124 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D45 PDB 1 1D45 1 12 1D45 1 12 1D45 A 1 1 12 13 24 1D45 13 24 1D45 B 1 1 12 BINDING SITE FOR RESIDUE HT A 25 A HT 25 Software 9 BINDING SITE FOR RESIDUE MG A 26 A MG 26 Software 6 A DA 6 A DA 6 9 1_555 A DT 7 A DT 7 9 1_555 A DT 8 A DT 8 9 1_555 A HOH 52 E HOH 9 1_555 A HOH 71 E HOH 9 1_555 B DA 18 B DA 6 9 1_555 B DT 19 B DT 7 9 1_555 B DT 20 B DT 8 9 1_555 B DC 21 B DC 9 9 1_555 A HOH 121 E HOH 6 1_555 A HOH 122 E HOH 6 1_555 A HOH 123 E HOH 6 1_555 A HOH 125 E HOH 6 1_555 A HOH 126 E HOH 6 1_555 B HOH 124 F HOH 6 1_555 19 P 21 21 21