0.041859
0.000000
0.000000
0.000000
0.025961
0.000000
0.000000
0.000000
0.015074
0.00000
0.00000
0.00000
Quintana, J.R.
Lipanov, A.A.
Dickerson, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
23.890
38.520
66.340
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C25 H24 N6 O
424.498
2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
HOECHST 33258
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
O
Y
148
N
C
Y
149
N
C
Y
150
N
C
Y
151
N
C
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
N
Y
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
C
Y
171
N
C
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
doub
Y
155
N
sing
Y
156
N
sing
N
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
Y
161
N
sing
Y
162
N
doub
N
163
N
sing
N
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
sing
N
168
N
sing
Y
169
N
doub
Y
170
N
sing
Y
171
N
sing
Y
172
N
sing
Y
173
N
doub
N
174
N
sing
Y
175
N
sing
N
176
N
sing
Y
177
N
doub
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
Y
181
N
doub
Y
182
N
sing
N
183
N
sing
Y
184
N
doub
Y
185
N
sing
Y
186
N
sing
Y
187
N
sing
Y
188
N
doub
N
189
N
sing
Y
190
N
sing
N
191
N
sing
Y
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
30
10294
10306
10.1021/bi00106a030
1718416
Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
1991
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
16
2671
2690
The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG)
1988
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
196
257
271
Binding of Hoechst 33258 to the Minor Groove of B-DNA
1987
US
J.Med.Chem.
JMCMAR
0151
0022-2623
29
727
733
Isohelical Analysis of DNA Groove-Binding Drugs
1986
10.2210/pdb1d45/pdb
pdb_00001d45
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
248.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
3663.392
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
2
syn
polymer
424.498
2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
100
nat
water
no
no
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2.08
40.95
VAPOR DIFFUSION, SITTING DROP
6.90
pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
277.00
WATER
1
MPD
1
MG ACETATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
-2.981
1
19
A
1
B
24
-6.362
A_DC1:DG24_B
1
-15.200
0.109
0.071
-0.169
8.190
1
19
A
2
B
23
-1.741
A_DG2:DC23_B
2
-3.825
-0.005
0.455
-0.183
-2.010
1
19
A
3
B
22
-1.193
A_DC3:DG22_B
3
-7.389
0.242
0.525
-0.328
14.243
1
19
A
4
B
21
-7.461
A_DG4:DC21_B
4
-14.845
-0.182
-0.009
-0.209
11.520
1
20
A
5
B
20
1.382
A_DA5:DT20_B
5
-17.341
0.245
0.054
-0.293
1.603
1
20
A
6
B
19
8.491
A_DA6:DT19_B
6
-21.545
-0.298
-0.170
-0.016
-2.545
1
20
A
7
B
18
5.405
A_DT7:DA18_B
7
-20.295
0.132
-0.136
-0.012
-12.766
1
20
A
8
B
17
0.194
A_DT8:DA17_B
8
-11.887
-0.507
-0.015
-0.302
-5.737
1
19
A
9
B
16
2.607
A_DC9:DG16_B
9
-8.540
0.678
0.008
0.128
8.815
1
19
A
10
B
15
-4.082
A_DG10:DC15_B
10
3.303
0.030
-0.049
-0.397
2.977
1
19
A
11
B
14
-5.649
A_DC11:DG14_B
11
-21.859
0.084
0.672
-0.251
2.594
1
19
A
12
B
13
-3.636
A_DG12:DC13_B
12
21.027
-0.579
-0.098
-0.302
3.095
33.204
A
A
1
2
14.263
B
B
24
23
3.177
8.059
-0.407
-0.070
AA_DC1DG2:DC23DG24_BB
1
-3.492
6.181
32.052
-1.441
0.141
3.532
41.332
A
A
2
3
-4.845
B
B
23
22
3.542
-3.415
0.690
0.363
AA_DG2DC3:DG22DC23_BB
2
2.100
-2.979
41.145
0.911
-0.734
3.140
29.220
A
A
3
4
12.839
B
B
22
21
3.135
6.399
-0.291
0.757
AA_DC3DG4:DC21DG22_BB
3
4.658
-9.344
28.150
0.141
1.566
3.185
40.049
A
A
4
5
5.002
B
B
21
20
3.196
3.421
0.219
-0.014
AA_DG4DA5:DT20DC21_BB
4
0.214
-0.312
39.908
-0.403
-0.295
3.325
34.573
A
A
5
6
11.049
B
B
20
19
3.458
6.526
0.182
-0.434
AA_DA5DA6:DT19DT20_BB
5
1.710
-2.895
33.928
-1.785
-0.030
3.329
34.876
A
A
6
7
2.782
B
B
19
18
3.352
1.666
-0.129
-0.470
AA_DA6DT7:DA18DT19_BB
6
-1.207
2.014
34.817
-1.042
0.028
3.461
34.530
A
A
7
8
3.415
B
B
18
17
3.469
2.026
0.007
-0.029
AA_DT7DT8:DA17DA18_BB
7
0.485
-0.817
34.469
-0.382
0.068
3.343
39.984
A
A
8
9
0.433
B
B
17
16
3.330
0.296
0.216
0.860
AA_DT8DC9:DG16DA17_BB
8
2.560
-3.746
39.904
1.222
-0.015
3.595
24.215
A
A
9
10
16.107
B
B
16
15
3.167
6.672
-0.226
2.010
AA_DC9DG10:DC15DG16_BB
9
-0.027
0.064
23.291
2.559
0.531
3.458
45.151
A
A
10
11
-13.470
B
B
15
14
3.725
-10.239
-0.753
1.109
AA_DG10DC11:DG14DC15_BB
10
-5.264
6.925
43.733
2.469
0.455
3.203
36.162
A
A
11
12
-18.953
B
B
14
13
3.462
-11.506
1.372
0.893
AA_DC11DG12:DC13DG14_BB
11
6.654
-10.960
33.707
3.154
-1.219
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
1992-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2011-08-24
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1991-06-04
REL
REL
HT
2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
MG
MAGNESIUM ION
HOH
water
HT
25
2
HT
HT
25
A
MO6
26
3
MG
MG
26
A
HOH
29
4
HOH
HOH
29
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
49
4
HOH
HOH
49
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
86
4
HOH
HOH
86
A
HOH
88
4
HOH
HOH
88
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
96
4
HOH
HOH
96
A
HOH
97
4
HOH
HOH
97
A
HOH
99
4
HOH
HOH
99
A
HOH
102
4
HOH
HOH
102
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
107
4
HOH
HOH
107
A
HOH
110
4
HOH
HOH
110
A
HOH
112
4
HOH
HOH
112
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
120
4
HOH
HOH
120
A
MO6
26
4
HOH
HOH
121
A
MO6
26
4
HOH
HOH
122
A
MO6
26
4
HOH
HOH
123
A
MO6
26
4
HOH
HOH
125
A
MO6
26
4
HOH
HOH
126
A
HOH
27
4
HOH
HOH
27
B
HOH
28
4
HOH
HOH
28
B
HOH
30
4
HOH
HOH
30
B
HOH
31
4
HOH
HOH
31
B
HOH
32
4
HOH
HOH
32
B
HOH
33
4
HOH
HOH
33
B
HOH
34
4
HOH
HOH
34
B
HOH
43
4
HOH
HOH
43
B
HOH
47
4
HOH
HOH
47
B
HOH
48
4
HOH
HOH
48
B
HOH
50
4
HOH
HOH
50
B
HOH
51
4
HOH
HOH
51
B
HOH
54
4
HOH
HOH
54
B
HOH
58
4
HOH
HOH
58
B
HOH
59
4
HOH
HOH
59
B
HOH
65
4
HOH
HOH
65
B
HOH
68
4
HOH
HOH
68
B
HOH
69
4
HOH
HOH
69
B
HOH
73
4
HOH
HOH
73
B
HOH
76
4
HOH
HOH
76
B
HOH
77
4
HOH
HOH
77
B
HOH
78
4
HOH
HOH
78
B
HOH
81
4
HOH
HOH
81
B
HOH
84
4
HOH
HOH
84
B
HOH
85
4
HOH
HOH
85
B
HOH
87
4
HOH
HOH
87
B
HOH
89
4
HOH
HOH
89
B
HOH
90
4
HOH
HOH
90
B
HOH
91
4
HOH
HOH
91
B
HOH
92
4
HOH
HOH
92
B
HOH
93
4
HOH
HOH
93
B
HOH
98
4
HOH
HOH
98
B
HOH
100
4
HOH
HOH
100
B
HOH
101
4
HOH
HOH
101
B
HOH
103
4
HOH
HOH
103
B
HOH
106
4
HOH
HOH
106
B
HOH
108
4
HOH
HOH
108
B
HOH
109
4
HOH
HOH
109
B
HOH
111
4
HOH
HOH
111
B
HOH
113
4
HOH
HOH
113
B
HOH
114
4
HOH
HOH
114
B
HOH
119
4
HOH
HOH
119
B
MO6
26
4
HOH
HOH
124
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
HOH
121
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
122
E
O
HOH
1_555
175.3
A
HOH
121
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
123
E
O
HOH
1_555
94.4
A
HOH
122
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
123
E
O
HOH
1_555
90.2
A
HOH
121
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
125
E
O
HOH
1_555
92.0
A
HOH
122
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
125
E
O
HOH
1_555
89.1
A
HOH
123
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
125
E
O
HOH
1_555
91.6
A
HOH
121
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
126
E
O
HOH
1_555
91.8
A
HOH
122
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
126
E
O
HOH
1_555
86.6
A
HOH
123
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
126
E
O
HOH
1_555
94.0
A
HOH
125
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
A
HOH
126
E
O
HOH
1_555
173.0
A
HOH
121
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
87.9
A
HOH
122
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
87.6
A
HOH
123
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
174.3
A
HOH
125
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
83.1
A
HOH
126
E
O
HOH
1_555
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
91.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-6.20
0.80
105.90
99.70
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
-2.42
0.40
121.90
119.48
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
7.58
1.10
110.50
118.08
A
A
A
O3'
P
OP1
DC
DG
DG
1
2
2
Y
1
-8.32
0.80
109.40
101.08
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-6.61
0.70
108.00
101.39
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.37
0.50
111.50
114.87
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
18.63
1.20
119.70
138.33
A
A
A
C3'
O3'
P
DG
DG
DC
2
2
3
Y
1
-9.96
1.50
119.60
109.64
A
A
A
OP1
P
OP2
DC
DC
DC
3
3
3
N
1
-14.10
1.50
119.60
105.50
A
A
A
OP1
P
OP2
DG
DG
DG
4
4
4
N
1
5.51
0.30
108.30
113.81
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.20
0.50
111.50
114.70
A
A
A
C5
C6
N1
DG
DG
DG
4
4
4
N
1
14.83
1.20
119.70
134.53
A
A
A
C3'
O3'
P
DG
DG
DA
4
4
5
Y
1
4.10
0.60
118.60
122.70
A
A
A
C6
N1
C2
DA
DA
DA
5
5
5
N
1
-3.96
0.50
117.70
113.74
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
1
4.28
0.60
118.60
122.88
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
1
16.73
1.20
119.70
136.43
A
A
A
C3'
O3'
P
DA
DA
DA
5
5
6
Y
1
-6.00
0.80
109.40
103.40
A
A
A
O5'
C5'
C4'
DA
DA
DA
6
6
6
N
1
18.77
1.60
120.90
139.67
A
A
A
P
O5'
C5'
DA
DA
DA
6
6
6
N
1
-4.87
0.70
108.00
103.13
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
3.85
0.60
118.60
122.45
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
1
9.51
1.20
119.70
129.21
A
A
A
C3'
O3'
P
DA
DA
DT
6
6
7
Y
1
-7.14
1.00
110.10
102.96
A
A
A
C1'
O4'
C4'
DT
DT
DT
7
7
7
N
1
-4.10
0.60
127.20
123.10
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
4.23
0.60
115.20
119.43
A
A
A
N3
C4
C5
DT
DT
DT
7
7
7
N
1
15.82
1.20
119.70
135.52
A
A
A
C3'
O3'
P
DT
DT
DT
7
7
8
Y
1
-6.35
0.80
109.40
103.05
A
A
A
O5'
C5'
C4'
DT
DT
DT
8
8
8
N
1
-4.85
0.60
127.20
122.35
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
3.66
0.60
115.20
118.86
A
A
A
N3
C4
C5
DT
DT
DT
8
8
8
N
1
-3.76
0.60
119.90
116.14
A
A
A
N3
C4
O4
DT
DT
DT
8
8
8
N
1
-3.71
0.60
122.90
119.19
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
19.92
1.20
119.70
139.62
A
A
A
C3'
O3'
P
DT
DT
DC
8
8
9
Y
1
-9.33
1.50
119.60
110.27
A
A
A
OP1
P
OP2
DC
DC
DC
9
9
9
N
1
-4.92
0.80
109.40
104.48
A
A
A
O5'
C5'
C4'
DC
DC
DC
9
9
9
N
1
11.47
1.20
119.70
131.17
A
A
A
C3'
O3'
P
DC
DC
DG
9
9
10
Y
1
6.07
0.30
108.30
114.37
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
8.82
1.20
119.70
128.52
A
A
A
C3'
O3'
P
DG
DG
DC
10
10
11
Y
1
-5.35
0.80
109.40
104.05
A
A
A
O5'
C5'
C4'
DC
DC
DC
11
11
11
N
1
15.79
1.20
119.70
135.49
A
A
A
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
-5.49
0.80
109.40
103.91
A
A
A
O5'
C5'
C4'
DG
DG
DG
12
12
12
N
1
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-5.78
0.70
108.00
102.22
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
8.92
1.20
110.70
119.62
B
B
B
O5'
P
OP2
DG
DG
DG
16
16
16
N
1
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
4.49
0.60
118.60
123.09
B
B
B
C6
N1
C2
DA
DA
DA
17
17
17
N
1
-4.25
0.50
129.30
125.05
B
B
B
N1
C2
N3
DA
DA
DA
17
17
17
N
1
-3.62
0.50
117.70
114.08
B
B
B
C5
C6
N1
DA
DA
DA
17
17
17
N
1
8.34
1.20
119.70
128.04
B
B
B
C3'
O3'
P
DA
DA
DA
17
17
18
Y
1
-4.95
0.80
109.40
104.45
B
B
B
O5'
C5'
C4'
DA
DA
DA
18
18
18
N
1
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
1
3.67
0.60
118.60
122.27
B
B
B
C6
N1
C2
DA
DA
DA
18
18
18
N
1
-4.02
0.50
129.30
125.28
B
B
B
N1
C2
N3
DA
DA
DA
18
18
18
N
1
-4.95
0.60
127.20
122.25
B
B
B
C2
N3
C4
DT
DT
DT
19
19
19
N
1
4.14
0.60
115.20
119.34
B
B
B
N3
C4
C5
DT
DT
DT
19
19
19
N
1
9.65
1.20
119.70
129.35
B
B
B
C3'
O3'
P
DT
DT
DT
19
19
20
Y
1
-4.95
0.70
108.00
103.05
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
1
-4.90
0.60
127.20
122.30
B
B
B
C2
N3
C4
DT
DT
DT
20
20
20
N
1
3.66
0.60
115.20
118.86
B
B
B
N3
C4
C5
DT
DT
DT
20
20
20
N
1
15.55
1.20
119.70
135.25
B
B
B
C3'
O3'
P
DT
DT
DC
20
20
21
Y
1
11.52
1.60
120.90
132.42
B
B
B
P
O5'
C5'
DC
DC
DC
21
21
21
N
1
-2.72
0.40
121.90
119.18
B
B
B
N3
C4
C5
DC
DC
DC
21
21
21
N
1
12.01
1.20
119.70
131.71
B
B
B
C3'
O3'
P
DC
DC
DG
21
21
22
Y
1
-11.10
1.50
119.60
108.50
B
B
B
OP1
P
OP2
DG
DG
DG
22
22
22
N
1
11.85
1.60
120.90
132.75
B
B
B
P
O5'
C5'
DG
DG
DG
22
22
22
N
1
-5.89
0.80
102.40
96.51
B
B
B
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
-6.75
0.80
105.90
99.15
B
B
B
O4'
C1'
C2'
DG
DG
DG
22
22
22
N
1
2.90
0.30
108.30
111.20
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
8.52
1.20
119.70
128.22
B
B
B
C3'
O3'
P
DC
DC
DG
23
23
24
Y
1
6.39
0.30
108.30
114.69
B
B
B
O4'
C1'
N9
DG
DG
DG
24
24
24
N
1
3.34
0.50
111.50
114.84
B
B
B
C5
C6
N1
DG
DG
DG
24
24
24
N
1
A
A
P
O5'
DA
DA
5
5
0.068
0.010
1.593
1.661
N
1
A
A
C8
O
DG
HOH
12
45
1.95
1_555
2_664
1
A
A
N7
O
DG
HOH
12
45
2.04
1_555
2_664
1
A
B
OP1
O
DC
HOH
3
47
2.12
1_555
2_665
1
A
A
N9
O
DG
HOH
12
45
2.18
1_555
2_664
0.1520000
1.900
8.000
2873
1
2.000
TR
isotropic
TR
isotropic
1.900
8.000
100
619
33
486
0
fix
fix
refinement
NUCLSQ
DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
metalc
1.930
A
MG
26
D
MG
MG
1_555
A
HOH
121
E
O
HOH
1_555
metalc
2.054
A
MG
26
D
MG
MG
1_555
A
HOH
122
E
O
HOH
1_555
metalc
1.931
A
MG
26
D
MG
MG
1_555
A
HOH
123
E
O
HOH
1_555
metalc
2.016
A
MG
26
D
MG
MG
1_555
A
HOH
125
E
O
HOH
1_555
metalc
1.962
A
MG
26
D
MG
MG
1_555
A
HOH
126
E
O
HOH
1_555
metalc
2.059
A
MG
26
D
MG
MG
1_555
B
HOH
124
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D45
PDB
1
1D45
1
12
1D45
1
12
1D45
A
1
1
12
13
24
1D45
13
24
1D45
B
1
1
12
BINDING SITE FOR RESIDUE HT A 25
A
HT
25
Software
9
BINDING SITE FOR RESIDUE MG A 26
A
MG
26
Software
6
A
DA
6
A
DA
6
9
1_555
A
DT
7
A
DT
7
9
1_555
A
DT
8
A
DT
8
9
1_555
A
HOH
52
E
HOH
9
1_555
A
HOH
71
E
HOH
9
1_555
B
DA
18
B
DA
6
9
1_555
B
DT
19
B
DT
7
9
1_555
B
DT
20
B
DT
8
9
1_555
B
DC
21
B
DC
9
9
1_555
A
HOH
121
E
HOH
6
1_555
A
HOH
122
E
HOH
6
1_555
A
HOH
123
E
HOH
6
1_555
A
HOH
125
E
HOH
6
1_555
A
HOH
126
E
HOH
6
1_555
B
HOH
124
F
HOH
6
1_555
19
P 21 21 21