0.041789 0.000000 0.000000 0.000000 0.025608 0.000000 0.000000 0.000000 0.015349 0.00000 0.00000 0.00000 Quintana, J.R. Lipanov, A.A. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.930 39.050 65.150 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C25 H24 N6 O 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOECHST 33258 non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N O Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N N Y 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N N N 173 N C N 174 N C N 175 N N N 176 N C N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N doub Y 155 N sing Y 156 N sing N 157 N sing Y 158 N doub N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing N 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub Y 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N sing N 183 N sing Y 184 N doub Y 185 N sing Y 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing US Biochemistry BICHAW 0033 0006-2960 30 10294 10306 10.1021/bi00106a030 1718416 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 1991 UK Nucleic Acids Res. NARHAD 0389 0305-1048 16 2671 2690 The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG) 1988 UK J.Mol.Biol. JMOBAK 0070 0022-2836 196 257 271 Binding of Hoechst 33258 to the Minor Groove of B-DNA 1987 US J.Med.Chem. JMCMAR 0151 0022-2623 29 727 733 Isohelical Analysis of DNA Groove-Binding Drugs 1986 10.2210/pdb1d46/pdb pdb_00001d46 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 173.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE 1 syn non-polymer 18.015 water 97 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.08 40.79 VAPOR DIFFUSION, SITTING DROP 6.90 pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K 277.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 1.888 1 19 A 1 B 24 -6.193 A_DC1:DG24_B 1 -16.894 0.280 -0.776 -0.280 -10.139 1 19 A 2 B 23 10.672 A_DG2:DC23_B 2 -14.522 -0.925 -0.143 -0.126 -4.660 1 19 A 3 B 22 -0.468 A_DC3:DG22_B 3 -9.325 0.467 0.273 -0.404 32.790 1 19 A 4 B 21 -8.201 A_DG4:DC21_B 4 -4.188 0.191 0.543 0.029 0.768 1 20 A 5 B 20 6.733 A_DA5:DT20_B 5 -24.203 0.072 0.193 -0.051 7.854 1 20 A 6 B 19 5.267 A_DA6:DT19_B 6 -19.124 0.534 0.508 -0.096 -15.430 1 20 A 7 B 18 10.799 A_DT7:DA18_B 7 -25.400 0.758 0.182 -0.234 -22.152 1 20 A 8 B 17 -0.801 A_DT8:DA17_B 8 -11.363 -1.167 0.484 0.270 -9.667 1 19 A 9 B 16 -9.903 A_DC9:DG16_B 9 5.916 0.245 -0.046 -0.148 24.286 1 19 A 10 B 15 -0.382 A_DG10:DC15_B 10 0.057 -0.452 0.597 -0.418 15.916 1 19 A 11 B 14 -3.751 A_DC11:DG14_B 11 -32.885 0.382 0.825 -0.332 -3.045 1 19 A 12 B 13 -6.417 A_DG12:DC13_B 12 15.904 -0.522 -0.121 -0.568 3.657 28.044 A A 1 2 20.009 B B 24 23 3.872 9.422 0.427 0.639 AA_DC1DG2:DC23DG24_BB 1 -6.573 13.960 25.626 -1.360 -2.751 2.953 48.120 A A 2 3 -1.495 B B 23 22 2.979 -1.219 0.320 1.035 AA_DG2DC3:DG22DC23_BB 2 -0.102 0.125 48.106 1.356 -0.400 2.480 27.919 A A 3 4 -1.007 B B 22 21 2.505 -0.485 0.120 0.592 AA_DC3DG4:DC21DG22_BB 3 -1.969 4.085 27.847 1.314 -0.606 4.138 39.619 A A 4 5 5.006 B B 21 20 4.128 3.371 0.469 0.076 AA_DG4DA5:DT20DC21_BB 4 7.354 -10.921 38.817 -0.391 0.407 2.916 39.783 A A 5 6 4.813 B B 20 19 2.946 3.271 0.138 -0.227 AA_DA5DA6:DT19DT20_BB 5 -0.668 0.982 39.649 -0.674 -0.272 3.666 33.883 A A 6 7 8.789 B B 19 18 3.725 5.093 0.399 -0.275 AA_DA6DT7:DA18DT19_BB 6 3.822 -6.595 33.297 -1.407 0.016 3.382 27.884 A A 7 8 -0.481 B B 18 17 3.318 -0.231 -0.664 -0.358 AA_DT7DT8:DA17DA18_BB 7 -4.026 8.383 27.597 -0.686 0.389 3.119 43.528 A A 8 9 1.383 B B 17 16 3.123 1.023 -0.009 0.860 AA_DT8DC9:DG16DA17_BB 8 5.340 -7.218 43.204 1.065 0.506 2.598 23.716 A A 9 10 16.021 B B 16 15 2.523 6.409 -0.065 0.962 AA_DC9DG10:DC15DG16_BB 9 -6.853 17.132 21.805 0.609 -1.693 3.457 45.665 A A 10 11 -16.559 B B 15 14 3.818 -12.679 -0.819 1.080 AA_DG10DC11:DG14DC15_BB 10 -4.603 6.012 43.730 2.655 0.597 3.877 36.889 A A 11 12 -18.616 B B 14 13 4.224 -11.522 0.841 0.752 AA_DC11DG12:DC13DG14_BB 11 7.123 -11.508 34.393 3.194 -0.090 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Derived calculations Data collection Database references Derived calculations 1 0 1992-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2011-08-24 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1991-06-04 REL REL MG MAGNESIUM ION HT 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOH water MG 26 2 MG MG 26 A HT 25 3 HT HT 25 B HOH 28 4 HOH HOH 28 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 49 4 HOH HOH 49 A HOH 56 4 HOH HOH 56 A HOH 62 4 HOH HOH 62 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 76 4 HOH HOH 76 A HOH 77 4 HOH HOH 77 A HOH 78 4 HOH HOH 78 A HOH 79 4 HOH HOH 79 A HOH 83 4 HOH HOH 83 A HOH 85 4 HOH HOH 85 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 96 4 HOH HOH 96 A HOH 99 4 HOH HOH 99 A HOH 100 4 HOH HOH 100 A HOH 101 4 HOH HOH 101 A HOH 103 4 HOH HOH 103 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 106 4 HOH HOH 106 A HOH 109 4 HOH HOH 109 A HOH 114 4 HOH HOH 114 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 122 4 HOH HOH 122 A HOH 27 4 HOH HOH 27 B HOH 29 4 HOH HOH 29 B HOH 32 4 HOH HOH 32 B HOH 35 4 HOH HOH 35 B HOH 36 4 HOH HOH 36 B HOH 37 4 HOH HOH 37 B HOH 38 4 HOH HOH 38 B HOH 39 4 HOH HOH 39 B HOH 40 4 HOH HOH 40 B HOH 41 4 HOH HOH 41 B HOH 42 4 HOH HOH 42 B HOH 47 4 HOH HOH 47 B HOH 48 4 HOH HOH 48 B HOH 50 4 HOH HOH 50 B HOH 51 4 HOH HOH 51 B HOH 52 4 HOH HOH 52 B HOH 53 4 HOH HOH 53 B HOH 54 4 HOH HOH 54 B HOH 55 4 HOH HOH 55 B HOH 57 4 HOH HOH 57 B HOH 58 4 HOH HOH 58 B HOH 59 4 HOH HOH 59 B HOH 60 4 HOH HOH 60 B HOH 61 4 HOH HOH 61 B HOH 63 4 HOH HOH 63 B HOH 64 4 HOH HOH 64 B HOH 65 4 HOH HOH 65 B HOH 66 4 HOH HOH 66 B HOH 67 4 HOH HOH 67 B HOH 68 4 HOH HOH 68 B HOH 69 4 HOH HOH 69 B HOH 72 4 HOH HOH 72 B HOH 73 4 HOH HOH 73 B HOH 74 4 HOH HOH 74 B HOH 75 4 HOH HOH 75 B HOH 80 4 HOH HOH 80 B HOH 81 4 HOH HOH 81 B HOH 82 4 HOH HOH 82 B HOH 84 4 HOH HOH 84 B HOH 86 4 HOH HOH 86 B HOH 87 4 HOH HOH 87 B HOH 88 4 HOH HOH 88 B HOH 89 4 HOH HOH 89 B HOH 92 4 HOH HOH 92 B HOH 93 4 HOH HOH 93 B HOH 94 4 HOH HOH 94 B HOH 95 4 HOH HOH 95 B HOH 97 4 HOH HOH 97 B HOH 98 4 HOH HOH 98 B HOH 102 4 HOH HOH 102 B HOH 107 4 HOH HOH 107 B HOH 108 4 HOH HOH 108 B HOH 110 4 HOH HOH 110 B HOH 111 4 HOH HOH 111 B HOH 112 4 HOH HOH 112 B HOH 113 4 HOH HOH 113 B HOH 115 4 HOH HOH 115 B HOH 116 4 HOH HOH 116 B HOH 119 4 HOH HOH 119 B HOH 120 4 HOH HOH 120 B HOH 121 4 HOH HOH 121 B HOH 123 4 HOH HOH 123 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DC 9 n 9 DC 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DG 16 n 4 DG 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B DC 21 n 9 DC 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 118 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 122 E O HOH 1_555 90.3 A HOH 118 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 119 F O HOH 1_555 178.7 A HOH 122 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 119 F O HOH 1_555 90.7 A HOH 118 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 120 F O HOH 1_555 90.8 A HOH 122 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 120 F O HOH 1_555 90.3 B HOH 119 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 120 F O HOH 1_555 88.3 A HOH 118 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 121 F O HOH 1_555 91.0 A HOH 122 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 121 F O HOH 1_555 88.1 B HOH 119 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 121 F O HOH 1_555 89.9 B HOH 120 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 121 F O HOH 1_555 177.6 A HOH 118 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 91.0 A HOH 122 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 177.1 B HOH 119 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 88.0 B HOH 120 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 92.2 B HOH 121 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 89.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O O HOH HOH 48 87 2.17 1 -3.77 0.40 104.50 100.73 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 -2.62 0.40 121.90 119.28 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 12.58 1.20 119.70 132.28 A A A C3' O3' P DC DC DG 1 1 2 Y 1 -10.88 1.50 119.60 108.72 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 2.21 0.30 108.30 110.51 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -4.09 0.60 125.10 121.01 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 3.72 0.50 111.50 115.22 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 16.97 1.20 119.70 136.67 A A A C3' O3' P DG DG DC 2 2 3 Y 1 9.33 1.10 110.50 119.83 A A A O3' P OP2 DG DC DC 2 3 3 Y 1 -10.03 1.60 120.90 110.87 A A A P O5' C5' DC DC DC 3 3 3 N 1 -3.49 0.40 104.50 101.01 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 2.35 0.30 108.30 110.65 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 8.59 1.20 119.70 128.29 A A A C3' O3' P DC DC DG 3 3 4 Y 1 7.19 0.30 108.30 115.49 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 30.69 1.20 119.70 150.39 A A A C3' O3' P DG DG DA 4 4 5 Y 1 4.68 0.30 108.30 112.98 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.51 0.50 129.30 125.79 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 8.50 1.20 119.70 128.20 A A A C3' O3' P DA DA DA 5 5 6 Y 1 -10.29 1.50 119.60 109.31 A A A OP1 P OP2 DA DA DA 6 6 6 N 1 12.44 1.60 120.90 133.34 A A A P O5' C5' DA DA DA 6 6 6 N 1 10.97 1.20 119.70 130.67 A A A C3' O3' P DA DA DT 6 6 7 Y 1 10.05 1.10 110.50 120.55 A A A O3' P OP1 DA DT DT 6 7 7 Y 1 -4.92 0.60 127.20 122.28 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 3.89 0.60 115.20 119.09 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 13.46 1.20 119.70 133.16 A A A C3' O3' P DT DT DT 7 7 8 Y 1 -9.00 1.50 119.60 110.60 A A A OP1 P OP2 DT DT DT 8 8 8 N 1 9.85 1.60 120.90 130.75 A A A P O5' C5' DT DT DT 8 8 8 N 1 8.58 1.10 109.80 118.38 A A A C5' C4' O4' DT DT DT 8 8 8 N 1 4.82 0.30 108.30 113.12 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 -5.45 0.60 127.20 121.75 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 3.64 0.60 115.20 118.84 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -4.37 0.60 119.90 115.53 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 -10.33 1.50 119.60 109.27 A A A OP1 P OP2 DC DC DC 9 9 9 N 1 9.98 1.60 120.90 130.88 A A A P O5' C5' DC DC DC 9 9 9 N 1 -4.67 0.70 108.00 103.33 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 -14.61 1.50 119.60 104.99 A A A OP1 P OP2 DG DG DG 10 10 10 N 1 11.59 1.20 110.70 122.29 A A A O5' P OP2 DG DG DG 10 10 10 N 1 -11.09 1.60 120.90 109.81 A A A P O5' C5' DG DG DG 10 10 10 N 1 -5.85 0.80 102.40 96.55 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 13.97 1.20 110.70 124.67 A A A O5' P OP2 DC DC DC 11 11 11 N 1 10.55 1.20 119.70 130.25 A A A C3' O3' P DC DC DG 11 11 12 Y 1 4.39 0.30 108.30 112.69 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 3.02 0.50 111.50 114.52 A A A C5 C6 N1 DG DG DG 12 12 12 N 1 2.70 0.30 108.30 111.00 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 3.11 0.50 119.90 123.01 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 4.64 0.70 118.00 122.64 B B B N3 C4 N4 DC DC DC 13 13 13 N 1 -11.37 1.50 119.60 108.23 B B B OP1 P OP2 DG DG DG 14 14 14 N 1 22.65 1.60 120.90 143.55 B B B P O5' C5' DG DG DG 14 14 14 N 1 -2.79 0.40 104.50 101.71 B B B O4' C4' C3' DG DG DG 14 14 14 N 1 3.05 0.30 108.30 111.35 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 3.28 0.50 111.50 114.78 B B B C5 C6 N1 DG DG DG 14 14 14 N 1 26.41 1.20 119.70 146.11 B B B C3' O3' P DG DG DC 14 14 15 Y 1 16.31 1.90 104.00 120.31 B B B O3' P O5' DG DC DC 14 15 15 Y 1 -11.30 1.50 119.60 108.30 B B B OP1 P OP2 DC DC DC 15 15 15 N 1 -6.07 0.80 102.40 96.33 B B B C3' C2' C1' DG DG DG 16 16 16 N 1 3.30 0.30 108.30 111.60 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 18.44 1.20 119.70 138.14 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -10.14 1.50 119.60 109.46 B B B OP1 P OP2 DA DA DA 17 17 17 N 1 4.35 0.60 118.60 122.95 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -3.58 0.50 129.30 125.72 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 -3.26 0.50 117.70 114.44 B B B C5 C6 N1 DA DA DA 17 17 17 N 1 3.97 0.60 118.60 122.57 B B B N1 C6 N6 DA DA DA 17 17 17 N 1 20.35 1.20 119.70 140.05 B B B C3' O3' P DA DA DA 17 17 18 Y 1 -9.46 1.50 119.60 110.14 B B B OP1 P OP2 DA DA DA 18 18 18 N 1 10.46 1.20 110.70 121.16 B B B O5' P OP2 DA DA DA 18 18 18 N 1 -13.97 1.60 120.90 106.93 B B B P O5' C5' DA DA DA 18 18 18 N 1 -5.23 0.80 109.40 104.17 B B B O5' C5' C4' DT DT DT 19 19 19 N 1 -7.94 1.00 110.10 102.16 B B B C1' O4' C4' DT DT DT 19 19 19 N 1 3.32 0.30 108.30 111.62 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.56 0.60 127.20 122.64 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 12.23 1.20 119.70 131.93 B B B C3' O3' P DT DT DT 19 19 20 Y 1 8.33 1.20 110.70 119.03 B B B O5' P OP1 DT DT DT 20 20 20 N 1 -3.90 0.60 127.20 123.30 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 10.27 1.20 119.70 129.97 B B B C3' O3' P DT DT DC 20 20 21 Y 1 -10.45 1.50 119.60 109.15 B B B OP1 P OP2 DC DC DC 21 21 21 N 1 -7.38 0.80 109.40 102.02 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 18.60 1.60 120.90 139.50 B B B P O5' C5' DC DC DC 21 21 21 N 1 3.00 0.50 119.90 122.90 B B B C2 N3 C4 DC DC DC 21 21 21 N 1 -3.34 0.40 121.90 118.56 B B B N3 C4 C5 DC DC DC 21 21 21 N 1 3.86 0.60 118.90 122.76 B B B N1 C2 O2 DC DC DC 21 21 21 N 1 13.63 1.20 119.70 133.33 B B B C3' O3' P DG DG DC 22 22 23 Y 1 4.33 0.30 108.30 112.63 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 -10.29 1.50 119.60 109.31 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 4.26 0.30 108.30 112.56 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 A A P O5' DC DC 3 3 0.078 0.010 1.593 1.671 N 1 B B P O5' DG DG 14 14 -0.063 0.010 1.593 1.530 N 1 A B O4' O DC HOH 11 116 1.78 1_555 2_664 1 A B O O HOH HOH 45 116 1.80 1_555 2_664 1 B A O4' O DC HOH 23 106 1.88 1_555 2_665 1 A B OP1 O DG HOH 10 50 1.88 1_555 4_465 1 A B O O HOH HOH 103 89 2.12 1_555 1_455 1 B B C5' O DA HOH 17 81 2.19 1_555 2_664 0.1490000 2.000 8.000 2072 1 2.000 TR isotropic TR isotropic 2.000 8.000 97 616 33 486 0 fix fix refinement NUCLSQ DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 1.990 A MG 26 C MG MG 1_555 A HOH 118 E O HOH 1_555 metalc 2.003 A MG 26 C MG MG 1_555 A HOH 122 E O HOH 1_555 metalc 1.991 A MG 26 C MG MG 1_555 B HOH 119 F O HOH 1_555 metalc 1.983 A MG 26 C MG MG 1_555 B HOH 120 F O HOH 1_555 metalc 1.990 A MG 26 C MG MG 1_555 B HOH 121 F O HOH 1_555 metalc 1.966 A MG 26 C MG MG 1_555 B HOH 123 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D46 PDB 1 1D46 1 12 1D46 1 12 1D46 A 1 1 12 13 24 1D46 13 24 1D46 B 1 1 12 BINDING SITE FOR RESIDUE MG A 26 A MG 26 Software 6 BINDING SITE FOR RESIDUE HT B 25 B HT 25 Software 14 A HOH 118 E HOH 6 1_555 A HOH 122 E HOH 6 1_555 B HOH 119 F HOH 6 1_555 B HOH 120 F HOH 6 1_555 B HOH 121 F HOH 6 1_555 B HOH 123 F HOH 6 1_555 A DA 6 A DA 6 14 1_555 A DT 7 A DT 7 14 1_555 A DT 8 A DT 8 14 1_555 A DC 9 A DC 9 14 1_555 A HOH 49 E HOH 14 2_665 A HOH 100 E HOH 14 1_555 B DA 18 B DA 6 14 1_555 B DT 19 B DT 7 14 1_555 B DT 20 B DT 8 14 1_555 B DC 21 B DC 9 14 1_555 B DG 22 B DG 10 14 1_555 B HOH 92 F HOH 14 1_555 B HOH 93 F HOH 14 1_555 B HOH 108 F HOH 14 1_555 19 P 21 21 21