1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Buchko, G.W.
Daughdrill, G.W.
de Lorimier, R.
Rao, S.
Isern, N.G.
Lingbeck, J.
Taylor, J.
Wold, M.S.
Gochin, M.
Spicer, L.D.
Lowry, D.F.
Kennedy, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
38
15116
15128
10.1021/bi991755p
10563794
Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies.
1999
10.2210/pdb1d4u/pdb
pdb_00001d4u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
13278.207
NUCLEOTIDE EXCISION REPAIR PROTEIN XPA (XPA-MBD)
XPA-MBD
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGD
MKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ
MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGD
MKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PET11D
PLASMID
database_2
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-10-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
1999-10-06
REL
ZN
ZINC ION
3D NOESY AND TOCSY SPECTRA WERE COLLECTED ON THE CO2+ SUBSTITUTED XPA-MBD.
structures with the least restraint violations
10
1
3D_15N-SEPARATED_NOESY
HNCACB
HCCH-TOCSY
HCCH-TOCSY-NNH
HNCO
CBCA(CO)NH
150mM
7.3
1ATM.
303
K
PARAMAGNETIC PSEUDOCONTACT SHIFTS WERE USED IN THE REFINEMENT.
simulated annealing
1
lowest energy
50MM TRIS-HCL;PH7.3,150MM KCL, 25MM DTT
BRUNGER, A.T.
refinement
X-PLOR
3.1
600
Varian
INOVA
750
Varian
UNITYPLUS
ZNA
112
2
ZN
ZN
112
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
PHE
3
n
3
PHE
3
A
ASP
4
n
4
ASP
4
A
TYR
5
n
5
TYR
5
A
VAL
6
n
6
VAL
6
A
ILE
7
n
7
ILE
7
A
CYS
8
n
8
CYS
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
CYS
11
n
11
CYS
11
A
GLY
12
n
12
GLY
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
PHE
15
n
15
PHE
15
A
MET
16
n
16
MET
16
A
ASP
17
n
17
ASP
17
A
SER
18
n
18
SER
18
A
TYR
19
n
19
TYR
19
A
LEU
20
n
20
LEU
20
A
MET
21
n
21
MET
21
A
ASP
22
n
22
ASP
22
A
HIS
23
n
23
HIS
23
A
PHE
24
n
24
PHE
24
A
ASP
25
n
25
ASP
25
A
LEU
26
n
26
LEU
26
A
PRO
27
n
27
PRO
27
A
THR
28
n
28
THR
28
A
CYS
29
n
29
CYS
29
A
ASP
30
n
30
ASP
30
A
ASP
31
n
31
ASP
31
A
CYS
32
n
32
CYS
32
A
ARG
33
n
33
ARG
33
A
ASP
34
n
34
ASP
34
A
ALA
35
n
35
ALA
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
LYS
38
n
38
LYS
38
A
HIS
39
n
39
HIS
39
A
LYS
40
n
40
LYS
40
A
LEU
41
n
41
LEU
41
A
ILE
42
n
42
ILE
42
A
THR
43
n
43
THR
43
A
LYS
44
n
44
LYS
44
A
THR
45
n
45
THR
45
A
GLU
46
n
46
GLU
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
GLU
50
n
50
GLU
50
A
TYR
51
n
51
TYR
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
LYS
54
n
54
LYS
54
A
ASP
55
n
55
ASP
55
A
CYS
56
n
56
CYS
56
A
ASP
57
n
57
ASP
57
A
LEU
58
n
58
LEU
58
A
GLU
59
n
59
GLU
59
A
LYS
60
n
60
LYS
60
A
ARG
61
n
61
ARG
61
A
GLU
62
n
62
GLU
62
A
PRO
63
n
63
PRO
63
A
PRO
64
n
64
PRO
64
A
LEU
65
n
65
LEU
65
A
LYS
66
n
66
LYS
66
A
PHE
67
n
67
PHE
67
A
ILE
68
n
68
ILE
68
A
VAL
69
n
69
VAL
69
A
LYS
70
n
70
LYS
70
A
LYS
71
n
71
LYS
71
A
ASN
72
n
72
ASN
72
A
PRO
73
n
73
PRO
73
A
HIS
74
n
74
HIS
74
A
HIS
75
n
75
HIS
75
A
SER
76
n
76
SER
76
A
GLN
77
n
77
GLN
77
A
TRP
78
n
78
TRP
78
A
GLY
79
n
79
GLY
79
A
ASP
80
n
80
ASP
80
A
MET
81
n
81
MET
81
A
LYS
82
n
82
LYS
82
A
LEU
83
n
83
LEU
83
A
TYR
84
n
84
TYR
84
A
LEU
85
n
85
LEU
85
A
LYS
86
n
86
LYS
86
A
LEU
87
n
87
LEU
87
A
GLN
88
n
88
GLN
88
A
ILE
89
n
89
ILE
89
A
VAL
90
n
90
VAL
90
A
LYS
91
n
91
LYS
91
A
ARG
92
n
92
ARG
92
A
SER
93
n
93
SER
93
A
LEU
94
n
94
LEU
94
A
GLU
95
n
95
GLU
95
A
VAL
96
n
96
VAL
96
A
TRP
97
n
97
TRP
97
A
GLY
98
n
98
GLY
98
A
SER
99
n
99
SER
99
A
GLN
100
n
100
GLN
100
A
GLU
101
n
101
GLU
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
GLU
104
n
104
GLU
104
A
GLU
105
n
105
GLU
105
A
ALA
106
n
106
ALA
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
VAL
109
n
109
VAL
109
A
ARG
110
n
110
ARG
110
A
GLN
111
n
111
GLN
111
A
author_defined_assembly
1
monomeric
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
11
A
SG
CYS
11
1_555
111.3
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
29
A
SG
CYS
29
1_555
114.1
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
29
A
SG
CYS
29
1_555
111.7
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
110.2
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
98.3
A
CYS
29
A
SG
CYS
29
1_555
A
ZN
112
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
110.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
6
A
N
VAL
6
A
O
PHE
15
A
O
PHE
15
A
N
ILE
42
A
N
ILE
42
A
O
TYR
84
A
O
TYR
84
A
N
LEU
83
A
N
LEU
83
A
O
ILE
68
A
O
ILE
68
1
A
ARG
33
0.318
SIDE CHAIN
1
A
ARG
61
0.182
SIDE CHAIN
1
A
ARG
92
0.278
SIDE CHAIN
1
A
ARG
110
0.257
SIDE CHAIN
1
A
GLU
2
68.83
121.03
1
A
ASP
4
177.26
38.00
1
A
GLU
14
-44.53
157.17
1
A
PHE
15
169.72
-161.60
1
A
MET
16
-158.00
-35.58
1
A
ASP
17
-170.43
134.15
1
A
SER
18
-139.90
-105.36
1
A
HIS
23
-146.64
42.52
1
A
PHE
24
-146.97
-33.06
1
A
ASP
25
96.48
25.54
1
A
PRO
27
-66.78
-83.50
1
A
THR
28
49.20
-176.53
1
A
ASP
30
-83.86
44.57
1
A
ASP
31
-132.63
-44.53
1
A
ARG
33
47.13
-169.58
1
A
ASP
34
-170.12
-33.38
1
A
ASP
36
75.54
-16.54
1
A
ASP
37
-142.97
-4.14
1
A
LYS
38
-173.70
-23.47
1
A
LYS
40
-35.85
119.97
1
A
LEU
41
-58.72
-176.09
1
A
LEU
52
70.46
45.73
1
A
LYS
54
-164.95
82.36
1
A
ASP
55
76.71
169.32
1
A
CYS
56
81.83
-13.67
1
A
GLU
62
75.40
64.09
1
A
PRO
64
-80.40
41.97
1
A
VAL
69
-171.58
101.94
1
A
LYS
70
172.60
-177.24
1
A
HIS
75
-54.79
172.55
1
A
SER
76
58.61
115.01
1
A
VAL
96
-86.68
-74.11
1
A
SER
99
-174.23
148.15
INTERACTIONS OF HUMAN NUCLEOTIDE EXCISION REPAIR PROTEIN XPA WITH RPA70 AND DNA: CHEMICAL SHIFT MAPPING AND 15N NMR RELAXATION STUDIES
1
N
N
2
N
N
A
LYS
44
A
LYS
44
HELX_P
A
LYS
48
A
LYS
48
1
1
5
A
LEU
85
A
LEU
85
HELX_P
A
TRP
97
A
TRP
97
1
2
13
A
SER
99
A
SER
99
HELX_P
A
ARG
110
A
ARG
110
1
3
12
metalc
2.294
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
112
B
ZN
ZN
1_555
metalc
2.357
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
112
B
ZN
ZN
1_555
metalc
2.296
A
CYS
29
A
SG
CYS
29
1_555
A
ZN
112
B
ZN
ZN
1_555
metalc
2.401
A
CYS
32
A
SG
CYS
32
1_555
A
ZN
112
B
ZN
ZN
1_555
DNA BINDING PROTEIN
DNA REPAIR, LOOP-RICH DOMAIN, NMR RELAXATION, DNA BINDING PROTEIN
XPA_HUMAN
UNP
1
P23025
40
150
1D4U
1
111
P23025
A
1
1
111
2
3
anti-parallel
anti-parallel
anti-parallel
A
VAL
6
A
VAL
6
A
ILE
7
A
ILE
7
A
GLU
14
A
GLU
14
A
PHE
15
A
PHE
15
A
ILE
42
A
ILE
42
A
THR
43
A
THR
43
A
LYS
82
A
LYS
82
A
TYR
84
A
TYR
84
A
PHE
67
A
PHE
67
A
VAL
69
A
VAL
69
BINDING SITE FOR RESIDUE ZN A 112
A
ZN
112
Software
4
A
CYS
8
A
CYS
8
4
1_555
A
CYS
11
A
CYS
11
4
1_555
A
CYS
29
A
CYS
29
4
1_555
A
CYS
32
A
CYS
32
4
1_555
1
P 1