1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Buchko, G.W. Daughdrill, G.W. de Lorimier, R. Rao, S. Isern, N.G. Lingbeck, J. Taylor, J. Wold, M.S. Gochin, M. Spicer, L.D. Lowry, D.F. Kennedy, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 38 15116 15128 10.1021/bi991755p 10563794 Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies. 1999 10.2210/pdb1d4u/pdb pdb_00001d4u 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13278.207 NUCLEOTIDE EXCISION REPAIR PROTEIN XPA (XPA-MBD) XPA-MBD 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGD MKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGD MKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PET11D PLASMID database_2 pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 1999-10-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 1999-10-06 REL ZN ZINC ION 3D NOESY AND TOCSY SPECTRA WERE COLLECTED ON THE CO2+ SUBSTITUTED XPA-MBD. structures with the least restraint violations 10 1 3D_15N-SEPARATED_NOESY HNCACB HCCH-TOCSY HCCH-TOCSY-NNH HNCO CBCA(CO)NH 150mM 7.3 1ATM. 303 K PARAMAGNETIC PSEUDOCONTACT SHIFTS WERE USED IN THE REFINEMENT. simulated annealing 1 lowest energy 50MM TRIS-HCL;PH7.3,150MM KCL, 25MM DTT BRUNGER, A.T. refinement X-PLOR 3.1 600 Varian INOVA 750 Varian UNITYPLUS ZNA 112 2 ZN ZN 112 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A PHE 3 n 3 PHE 3 A ASP 4 n 4 ASP 4 A TYR 5 n 5 TYR 5 A VAL 6 n 6 VAL 6 A ILE 7 n 7 ILE 7 A CYS 8 n 8 CYS 8 A GLU 9 n 9 GLU 9 A GLU 10 n 10 GLU 10 A CYS 11 n 11 CYS 11 A GLY 12 n 12 GLY 12 A LYS 13 n 13 LYS 13 A GLU 14 n 14 GLU 14 A PHE 15 n 15 PHE 15 A MET 16 n 16 MET 16 A ASP 17 n 17 ASP 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A LEU 20 n 20 LEU 20 A MET 21 n 21 MET 21 A ASP 22 n 22 ASP 22 A HIS 23 n 23 HIS 23 A PHE 24 n 24 PHE 24 A ASP 25 n 25 ASP 25 A LEU 26 n 26 LEU 26 A PRO 27 n 27 PRO 27 A THR 28 n 28 THR 28 A CYS 29 n 29 CYS 29 A ASP 30 n 30 ASP 30 A ASP 31 n 31 ASP 31 A CYS 32 n 32 CYS 32 A ARG 33 n 33 ARG 33 A ASP 34 n 34 ASP 34 A ALA 35 n 35 ALA 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A LYS 38 n 38 LYS 38 A HIS 39 n 39 HIS 39 A LYS 40 n 40 LYS 40 A LEU 41 n 41 LEU 41 A ILE 42 n 42 ILE 42 A THR 43 n 43 THR 43 A LYS 44 n 44 LYS 44 A THR 45 n 45 THR 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A GLU 50 n 50 GLU 50 A TYR 51 n 51 TYR 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A LYS 54 n 54 LYS 54 A ASP 55 n 55 ASP 55 A CYS 56 n 56 CYS 56 A ASP 57 n 57 ASP 57 A LEU 58 n 58 LEU 58 A GLU 59 n 59 GLU 59 A LYS 60 n 60 LYS 60 A ARG 61 n 61 ARG 61 A GLU 62 n 62 GLU 62 A PRO 63 n 63 PRO 63 A PRO 64 n 64 PRO 64 A LEU 65 n 65 LEU 65 A LYS 66 n 66 LYS 66 A PHE 67 n 67 PHE 67 A ILE 68 n 68 ILE 68 A VAL 69 n 69 VAL 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A ASN 72 n 72 ASN 72 A PRO 73 n 73 PRO 73 A HIS 74 n 74 HIS 74 A HIS 75 n 75 HIS 75 A SER 76 n 76 SER 76 A GLN 77 n 77 GLN 77 A TRP 78 n 78 TRP 78 A GLY 79 n 79 GLY 79 A ASP 80 n 80 ASP 80 A MET 81 n 81 MET 81 A LYS 82 n 82 LYS 82 A LEU 83 n 83 LEU 83 A TYR 84 n 84 TYR 84 A LEU 85 n 85 LEU 85 A LYS 86 n 86 LYS 86 A LEU 87 n 87 LEU 87 A GLN 88 n 88 GLN 88 A ILE 89 n 89 ILE 89 A VAL 90 n 90 VAL 90 A LYS 91 n 91 LYS 91 A ARG 92 n 92 ARG 92 A SER 93 n 93 SER 93 A LEU 94 n 94 LEU 94 A GLU 95 n 95 GLU 95 A VAL 96 n 96 VAL 96 A TRP 97 n 97 TRP 97 A GLY 98 n 98 GLY 98 A SER 99 n 99 SER 99 A GLN 100 n 100 GLN 100 A GLU 101 n 101 GLU 101 A ALA 102 n 102 ALA 102 A LEU 103 n 103 LEU 103 A GLU 104 n 104 GLU 104 A GLU 105 n 105 GLU 105 A ALA 106 n 106 ALA 106 A LYS 107 n 107 LYS 107 A GLU 108 n 108 GLU 108 A VAL 109 n 109 VAL 109 A ARG 110 n 110 ARG 110 A GLN 111 n 111 GLN 111 A author_defined_assembly 1 monomeric A CYS 8 A SG CYS 8 1_555 A ZN 112 B ZN ZN 1_555 A CYS 11 A SG CYS 11 1_555 111.3 A CYS 8 A SG CYS 8 1_555 A ZN 112 B ZN ZN 1_555 A CYS 29 A SG CYS 29 1_555 114.1 A CYS 11 A SG CYS 11 1_555 A ZN 112 B ZN ZN 1_555 A CYS 29 A SG CYS 29 1_555 111.7 A CYS 8 A SG CYS 8 1_555 A ZN 112 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 110.2 A CYS 11 A SG CYS 11 1_555 A ZN 112 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 98.3 A CYS 29 A SG CYS 29 1_555 A ZN 112 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 110.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 6 A N VAL 6 A O PHE 15 A O PHE 15 A N ILE 42 A N ILE 42 A O TYR 84 A O TYR 84 A N LEU 83 A N LEU 83 A O ILE 68 A O ILE 68 1 A ARG 33 0.318 SIDE CHAIN 1 A ARG 61 0.182 SIDE CHAIN 1 A ARG 92 0.278 SIDE CHAIN 1 A ARG 110 0.257 SIDE CHAIN 1 A GLU 2 68.83 121.03 1 A ASP 4 177.26 38.00 1 A GLU 14 -44.53 157.17 1 A PHE 15 169.72 -161.60 1 A MET 16 -158.00 -35.58 1 A ASP 17 -170.43 134.15 1 A SER 18 -139.90 -105.36 1 A HIS 23 -146.64 42.52 1 A PHE 24 -146.97 -33.06 1 A ASP 25 96.48 25.54 1 A PRO 27 -66.78 -83.50 1 A THR 28 49.20 -176.53 1 A ASP 30 -83.86 44.57 1 A ASP 31 -132.63 -44.53 1 A ARG 33 47.13 -169.58 1 A ASP 34 -170.12 -33.38 1 A ASP 36 75.54 -16.54 1 A ASP 37 -142.97 -4.14 1 A LYS 38 -173.70 -23.47 1 A LYS 40 -35.85 119.97 1 A LEU 41 -58.72 -176.09 1 A LEU 52 70.46 45.73 1 A LYS 54 -164.95 82.36 1 A ASP 55 76.71 169.32 1 A CYS 56 81.83 -13.67 1 A GLU 62 75.40 64.09 1 A PRO 64 -80.40 41.97 1 A VAL 69 -171.58 101.94 1 A LYS 70 172.60 -177.24 1 A HIS 75 -54.79 172.55 1 A SER 76 58.61 115.01 1 A VAL 96 -86.68 -74.11 1 A SER 99 -174.23 148.15 INTERACTIONS OF HUMAN NUCLEOTIDE EXCISION REPAIR PROTEIN XPA WITH RPA70 AND DNA: CHEMICAL SHIFT MAPPING AND 15N NMR RELAXATION STUDIES 1 N N 2 N N A LYS 44 A LYS 44 HELX_P A LYS 48 A LYS 48 1 1 5 A LEU 85 A LEU 85 HELX_P A TRP 97 A TRP 97 1 2 13 A SER 99 A SER 99 HELX_P A ARG 110 A ARG 110 1 3 12 metalc 2.294 A CYS 8 A SG CYS 8 1_555 A ZN 112 B ZN ZN 1_555 metalc 2.357 A CYS 11 A SG CYS 11 1_555 A ZN 112 B ZN ZN 1_555 metalc 2.296 A CYS 29 A SG CYS 29 1_555 A ZN 112 B ZN ZN 1_555 metalc 2.401 A CYS 32 A SG CYS 32 1_555 A ZN 112 B ZN ZN 1_555 DNA BINDING PROTEIN DNA REPAIR, LOOP-RICH DOMAIN, NMR RELAXATION, DNA BINDING PROTEIN XPA_HUMAN UNP 1 P23025 40 150 1D4U 1 111 P23025 A 1 1 111 2 3 anti-parallel anti-parallel anti-parallel A VAL 6 A VAL 6 A ILE 7 A ILE 7 A GLU 14 A GLU 14 A PHE 15 A PHE 15 A ILE 42 A ILE 42 A THR 43 A THR 43 A LYS 82 A LYS 82 A TYR 84 A TYR 84 A PHE 67 A PHE 67 A VAL 69 A VAL 69 BINDING SITE FOR RESIDUE ZN A 112 A ZN 112 Software 4 A CYS 8 A CYS 8 4 1_555 A CYS 11 A CYS 11 4 1_555 A CYS 29 A CYS 29 4 1_555 A CYS 32 A CYS 32 4 1_555 1 P 1