data_1D54 # _entry.id 1D54 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D54 pdb_00001d54 10.2210/pdb1d54/pdb RCSB DDF035 ? ? WWPDB D_1000172655 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D54 _pdbx_database_status.recvd_initial_deposition_date 1992-01-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, G.A.' 1 'Brown, T.' 2 'Hunter, W.N.' 3 # _citation.id primary _citation.title ;Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin. ; _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 204 _citation.page_first 69 _citation.page_last 74 _citation.year 1992 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1740157 _citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1992.tb16606.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, G.A.' 1 ? primary 'Brown, T.' 2 ? primary 'Hunter, W.N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') ; 1808.229 1 ? ? ? ? 2 non-polymer syn "4'-EPIDOXORUBICIN" 544.527 1 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DT)(DA)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGTACA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "4'-EPIDOXORUBICIN" DM6 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM6 non-polymer . "4'-EPIDOXORUBICIN" "4'-EPIADRIAMYCIN" 'C27 H30 N O11 1' 544.527 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM6 1 7 7 DM6 DM6 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D54 _cell.length_a 28.020 _cell.length_b 28.020 _cell.length_c 52.930 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D54 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1D54 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.18 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 'MG ACETATE' ? ? ? 1 5 1 SPERMINE_HCL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 297.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D54 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 5644 _reflns.number_all 11022 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D54 _refine.ls_number_reflns_obs 2381 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 1.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1700000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 192 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 7.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D54 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D54 _struct.title ;ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D54 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D54 _struct_ref.pdbx_db_accession 1D54 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D54 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D54 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.4650000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 1 N3 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 1 O4 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM6 7 ? 12 'BINDING SITE FOR RESIDUE DM6 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DT A 1 ? DT A 1 . ? 8_555 ? 2 AC1 12 DG A 2 ? DG A 2 . ? 8_555 ? 3 AC1 12 DT A 3 ? DT A 3 . ? 8_555 ? 4 AC1 12 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ? 6 AC1 12 HOH C . ? HOH A 9 . ? 1_555 ? 7 AC1 12 HOH C . ? HOH A 18 . ? 1_555 ? 8 AC1 12 HOH C . ? HOH A 19 . ? 8_555 ? 9 AC1 12 HOH C . ? HOH A 21 . ? 1_555 ? 10 AC1 12 HOH C . ? HOH A 25 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 29 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 30 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.376 _pdbx_validate_rmsd_bond.bond_target_value 1.446 _pdbx_validate_rmsd_bond.bond_deviation -0.070 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? "C2'" A DT 1 ? ? 100.52 105.90 -5.38 0.80 N 2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 121.12 127.20 -6.08 0.60 N 3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.75 115.20 4.55 0.60 N 4 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 102.21 109.40 -7.19 0.80 N 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.01 108.30 6.71 0.30 N 6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.70 111.50 3.20 0.50 N 7 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.06 119.90 -4.84 0.70 N 8 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.13 119.70 7.43 1.20 Y 9 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 104.54 109.40 -4.86 0.80 N 10 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 122.32 127.20 -4.88 0.60 N 11 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 119.42 115.20 4.22 0.60 N 12 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 102.02 109.40 -7.38 0.80 N 13 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.64 129.30 -3.66 0.50 N 14 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.49 109.40 -6.91 0.80 N 15 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.32 108.30 6.02 0.30 N 16 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.06 108.00 -6.94 0.70 N 17 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.80 118.60 4.20 0.60 N 18 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.56 129.30 -4.74 0.50 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM6 C1 C Y N 108 DM6 C2 C Y N 109 DM6 C3 C Y N 110 DM6 C4 C Y N 111 DM6 C5 C N N 112 DM6 C6 C Y N 113 DM6 C7 C N S 114 DM6 C8 C N N 115 DM6 C9 C N S 116 DM6 C10 C N N 117 DM6 C11 C Y N 118 DM6 C12 C N N 119 DM6 C13 C N N 120 DM6 C14 C N N 121 DM6 C15 C Y N 122 DM6 C16 C Y N 123 DM6 C17 C Y N 124 DM6 C18 C Y N 125 DM6 C19 C Y N 126 DM6 C20 C Y N 127 DM6 C21 C N N 128 DM6 O4 O N N 129 DM6 O5 O N N 130 DM6 O6 O N N 131 DM6 O7 O N N 132 DM6 O9 O N N 133 DM6 O11 O N N 134 DM6 O12 O N N 135 DM6 O13 O N N 136 DM6 O14 O N N 137 DM6 "C1'" C N R 138 DM6 "C2'" C N N 139 DM6 "C3'" C N S 140 DM6 "C4'" C N R 141 DM6 "C5'" C N S 142 DM6 "C6'" C N N 143 DM6 "O4'" O N N 144 DM6 "O5'" O N N 145 DM6 "N3'" N N N 146 DM6 H1 H N N 147 DM6 H2 H N N 148 DM6 H3 H N N 149 DM6 H7 H N N 150 DM6 H81 H N N 151 DM6 H82 H N N 152 DM6 H101 H N N 153 DM6 H102 H N N 154 DM6 H141 H N N 155 DM6 H142 H N N 156 DM6 H211 H N N 157 DM6 H212 H N N 158 DM6 H213 H N N 159 DM6 HO6 H N N 160 DM6 HO9 H N N 161 DM6 HO11 H N N 162 DM6 HO14 H N N 163 DM6 "H1'" H N N 164 DM6 "H2'1" H N N 165 DM6 "H2'2" H N N 166 DM6 "H3'" H N N 167 DM6 "H4'" H N N 168 DM6 "H5'" H N N 169 DM6 "H6'1" H N N 170 DM6 "H6'2" H N N 171 DM6 "H6'3" H N N 172 DM6 "HO'4" H N N 173 DM6 "HN'1" H N N 174 DM6 "HN'2" H N N 175 DM6 "HN'3" H N N 176 DT OP3 O N N 177 DT P P N N 178 DT OP1 O N N 179 DT OP2 O N N 180 DT "O5'" O N N 181 DT "C5'" C N N 182 DT "C4'" C N R 183 DT "O4'" O N N 184 DT "C3'" C N S 185 DT "O3'" O N N 186 DT "C2'" C N N 187 DT "C1'" C N R 188 DT N1 N N N 189 DT C2 C N N 190 DT O2 O N N 191 DT N3 N N N 192 DT C4 C N N 193 DT O4 O N N 194 DT C5 C N N 195 DT C7 C N N 196 DT C6 C N N 197 DT HOP3 H N N 198 DT HOP2 H N N 199 DT "H5'" H N N 200 DT "H5''" H N N 201 DT "H4'" H N N 202 DT "H3'" H N N 203 DT "HO3'" H N N 204 DT "H2'" H N N 205 DT "H2''" H N N 206 DT "H1'" H N N 207 DT H3 H N N 208 DT H71 H N N 209 DT H72 H N N 210 DT H73 H N N 211 DT H6 H N N 212 HOH O O N N 213 HOH H1 H N N 214 HOH H2 H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM6 C1 C2 doub Y N 113 DM6 C1 C15 sing Y N 114 DM6 C1 H1 sing N N 115 DM6 C2 C3 sing Y N 116 DM6 C2 H2 sing N N 117 DM6 C3 C4 doub Y N 118 DM6 C3 H3 sing N N 119 DM6 C4 C16 sing Y N 120 DM6 C4 O4 sing N N 121 DM6 C5 C16 sing N N 122 DM6 C5 C17 sing N N 123 DM6 C5 O5 doub N N 124 DM6 C6 C17 doub Y N 125 DM6 C6 C20 sing Y N 126 DM6 C6 O6 sing N N 127 DM6 C7 C8 sing N N 128 DM6 C7 C20 sing N N 129 DM6 C7 O7 sing N N 130 DM6 C7 H7 sing N N 131 DM6 C8 C9 sing N N 132 DM6 C8 H81 sing N N 133 DM6 C8 H82 sing N N 134 DM6 C9 C10 sing N N 135 DM6 C9 C13 sing N N 136 DM6 C9 O9 sing N N 137 DM6 C10 C19 sing N N 138 DM6 C10 H101 sing N N 139 DM6 C10 H102 sing N N 140 DM6 C11 C18 doub Y N 141 DM6 C11 C19 sing Y N 142 DM6 C11 O11 sing N N 143 DM6 C12 C15 sing N N 144 DM6 C12 C18 sing N N 145 DM6 C12 O12 doub N N 146 DM6 C13 C14 sing N N 147 DM6 C13 O13 doub N N 148 DM6 C14 O14 sing N N 149 DM6 C14 H141 sing N N 150 DM6 C14 H142 sing N N 151 DM6 C15 C16 doub Y N 152 DM6 C17 C18 sing Y N 153 DM6 C19 C20 doub Y N 154 DM6 C21 O4 sing N N 155 DM6 C21 H211 sing N N 156 DM6 C21 H212 sing N N 157 DM6 C21 H213 sing N N 158 DM6 O6 HO6 sing N N 159 DM6 O7 "C1'" sing N N 160 DM6 O9 HO9 sing N N 161 DM6 O11 HO11 sing N N 162 DM6 O14 HO14 sing N N 163 DM6 "C1'" "C2'" sing N N 164 DM6 "C1'" "O5'" sing N N 165 DM6 "C1'" "H1'" sing N N 166 DM6 "C2'" "C3'" sing N N 167 DM6 "C2'" "H2'1" sing N N 168 DM6 "C2'" "H2'2" sing N N 169 DM6 "C3'" "C4'" sing N N 170 DM6 "C3'" "N3'" sing N N 171 DM6 "C3'" "H3'" sing N N 172 DM6 "C4'" "C5'" sing N N 173 DM6 "C4'" "O4'" sing N N 174 DM6 "C4'" "H4'" sing N N 175 DM6 "C5'" "C6'" sing N N 176 DM6 "C5'" "O5'" sing N N 177 DM6 "C5'" "H5'" sing N N 178 DM6 "C6'" "H6'1" sing N N 179 DM6 "C6'" "H6'2" sing N N 180 DM6 "C6'" "H6'3" sing N N 181 DM6 "O4'" "HO'4" sing N N 182 DM6 "N3'" "HN'1" sing N N 183 DM6 "N3'" "HN'2" sing N N 184 DM6 "N3'" "HN'3" sing N N 185 DT OP3 P sing N N 186 DT OP3 HOP3 sing N N 187 DT P OP1 doub N N 188 DT P OP2 sing N N 189 DT P "O5'" sing N N 190 DT OP2 HOP2 sing N N 191 DT "O5'" "C5'" sing N N 192 DT "C5'" "C4'" sing N N 193 DT "C5'" "H5'" sing N N 194 DT "C5'" "H5''" sing N N 195 DT "C4'" "O4'" sing N N 196 DT "C4'" "C3'" sing N N 197 DT "C4'" "H4'" sing N N 198 DT "O4'" "C1'" sing N N 199 DT "C3'" "O3'" sing N N 200 DT "C3'" "C2'" sing N N 201 DT "C3'" "H3'" sing N N 202 DT "O3'" "HO3'" sing N N 203 DT "C2'" "C1'" sing N N 204 DT "C2'" "H2'" sing N N 205 DT "C2'" "H2''" sing N N 206 DT "C1'" N1 sing N N 207 DT "C1'" "H1'" sing N N 208 DT N1 C2 sing N N 209 DT N1 C6 sing N N 210 DT C2 O2 doub N N 211 DT C2 N3 sing N N 212 DT N3 C4 sing N N 213 DT N3 H3 sing N N 214 DT C4 O4 doub N N 215 DT C4 C5 sing N N 216 DT C5 C7 sing N N 217 DT C5 C6 doub N N 218 DT C7 H71 sing N N 219 DT C7 H72 sing N N 220 DT C7 H73 sing N N 221 DT C6 H6 sing N N 222 HOH O H1 sing N N 223 HOH O H2 sing N N 224 # _ndb_struct_conf_na.entry_id 1D54 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 A DA 6 8_555 -0.136 -0.157 -0.024 9.289 0.365 -2.863 1 A_DT1:DA6_A A 1 ? A 6 ? 20 1 1 A DG 2 1_555 A DC 5 8_555 -0.039 -0.123 -0.417 -18.268 4.090 -0.257 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DT 3 1_555 A DA 4 8_555 -0.167 -0.084 -0.001 -6.255 -5.878 5.490 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1 1 A DA 4 1_555 A DT 3 8_555 0.167 -0.084 -0.001 6.255 -5.878 5.490 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_555 0.039 -0.123 -0.417 18.268 4.090 -0.257 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DA 6 1_555 A DT 1 8_555 0.136 -0.157 -0.024 -9.289 0.365 -2.863 6 A_DA6:DT1_A A 6 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 A DA 6 8_555 A DG 2 1_555 A DC 5 8_555 1.238 1.253 7.084 2.480 -3.613 38.704 2.825 -1.207 7.006 -5.430 -3.727 38.942 1 AA_DT1DG2:DC5DA6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_555 A DT 3 1_555 A DA 4 8_555 -0.855 0.091 3.135 -3.436 -1.599 27.272 0.574 0.978 3.206 -3.371 7.242 27.529 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DT 3 1_555 A DA 4 8_555 A DA 4 1_555 A DT 3 8_555 0.000 0.476 3.240 0.000 12.560 37.195 -0.818 0.000 3.228 19.038 0.000 39.187 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DA 4 1_555 A DT 3 8_555 A DC 5 1_555 A DG 2 8_555 0.855 0.091 3.135 3.436 -1.599 27.272 0.574 -0.978 3.206 -3.371 -7.242 27.529 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_555 A DA 6 1_555 A DT 1 8_555 -1.238 1.253 7.084 -2.480 -3.613 38.704 2.825 1.207 7.006 -5.430 3.727 38.942 5 AA_DC5DA6:DT1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1D54 _atom_sites.fract_transf_matrix[1][1] 0.035689 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035689 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018893 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DT A 1 1 ? -18.905 19.928 23.046 1.00 23.55 ? 1 DT A "O5'" 1 ATOM 2 C "C5'" . DT A 1 1 ? -18.468 21.049 23.882 1.00 14.24 ? 1 DT A "C5'" 1 ATOM 3 C "C4'" . DT A 1 1 ? -17.005 20.869 24.051 1.00 11.17 ? 1 DT A "C4'" 1 ATOM 4 O "O4'" . DT A 1 1 ? -16.725 19.743 24.824 1.00 16.67 ? 1 DT A "O4'" 1 ATOM 5 C "C3'" . DT A 1 1 ? -16.173 20.718 22.776 1.00 21.28 ? 1 DT A "C3'" 1 ATOM 6 O "O3'" . DT A 1 1 ? -14.943 21.424 23.030 1.00 22.15 ? 1 DT A "O3'" 1 ATOM 7 C "C2'" . DT A 1 1 ? -15.856 19.202 22.755 1.00 17.26 ? 1 DT A "C2'" 1 ATOM 8 C "C1'" . DT A 1 1 ? -15.705 18.877 24.263 1.00 15.89 ? 1 DT A "C1'" 1 ATOM 9 N N1 . DT A 1 1 ? -16.165 17.456 24.443 1.00 12.22 ? 1 DT A N1 1 ATOM 10 C C2 . DT A 1 1 ? -15.150 16.523 24.628 1.00 8.49 ? 1 DT A C2 1 ATOM 11 O O2 . DT A 1 1 ? -13.960 16.851 24.692 1.00 10.89 ? 1 DT A O2 1 ATOM 12 N N3 . DT A 1 1 ? -15.512 15.195 24.713 1.00 9.20 ? 1 DT A N3 1 ATOM 13 C C4 . DT A 1 1 ? -16.809 14.820 24.660 1.00 5.77 ? 1 DT A C4 1 ATOM 14 O O4 . DT A 1 1 ? -17.053 13.601 24.734 1.00 11.75 ? 1 DT A O4 1 ATOM 15 C C5 . DT A 1 1 ? -17.832 15.812 24.448 1.00 6.63 ? 1 DT A C5 1 ATOM 16 C C7 . DT A 1 1 ? -19.264 15.338 24.395 1.00 13.04 ? 1 DT A C7 1 ATOM 17 C C6 . DT A 1 1 ? -17.451 17.075 24.369 1.00 8.17 ? 1 DT A C6 1 ATOM 18 P P . DG A 1 2 ? -14.324 22.531 22.088 1.00 26.77 ? 2 DG A P 1 ATOM 19 O OP1 . DG A 1 2 ? -13.391 23.240 22.998 1.00 22.17 ? 2 DG A OP1 1 ATOM 20 O OP2 . DG A 1 2 ? -15.408 23.313 21.426 1.00 29.74 ? 2 DG A OP2 1 ATOM 21 O "O5'" . DG A 1 2 ? -13.570 21.637 20.971 1.00 17.70 ? 2 DG A "O5'" 1 ATOM 22 C "C5'" . DG A 1 2 ? -12.298 21.096 21.415 1.00 15.48 ? 2 DG A "C5'" 1 ATOM 23 C "C4'" . DG A 1 2 ? -11.836 20.334 20.203 1.00 11.27 ? 2 DG A "C4'" 1 ATOM 24 O "O4'" . DG A 1 2 ? -12.536 19.154 20.092 1.00 15.86 ? 2 DG A "O4'" 1 ATOM 25 C "C3'" . DG A 1 2 ? -11.908 21.068 18.880 1.00 12.95 ? 2 DG A "C3'" 1 ATOM 26 O "O3'" . DG A 1 2 ? -10.776 20.726 18.086 1.00 25.06 ? 2 DG A "O3'" 1 ATOM 27 C "C2'" . DG A 1 2 ? -13.153 20.446 18.250 1.00 13.45 ? 2 DG A "C2'" 1 ATOM 28 C "C1'" . DG A 1 2 ? -12.976 19.028 18.758 1.00 13.17 ? 2 DG A "C1'" 1 ATOM 29 N N9 . DG A 1 2 ? -14.158 18.213 18.578 1.00 12.21 ? 2 DG A N9 1 ATOM 30 C C8 . DG A 1 2 ? -15.481 18.591 18.557 1.00 12.08 ? 2 DG A C8 1 ATOM 31 N N7 . DG A 1 2 ? -16.302 17.585 18.383 1.00 19.58 ? 2 DG A N7 1 ATOM 32 C C5 . DG A 1 2 ? -15.489 16.465 18.277 1.00 11.73 ? 2 DG A C5 1 ATOM 33 C C6 . DG A 1 2 ? -15.781 15.089 18.139 1.00 7.72 ? 2 DG A C6 1 ATOM 34 O O6 . DG A 1 2 ? -16.896 14.590 17.970 1.00 12.39 ? 2 DG A O6 1 ATOM 35 N N1 . DG A 1 2 ? -14.680 14.265 18.139 1.00 10.47 ? 2 DG A N1 1 ATOM 36 C C2 . DG A 1 2 ? -13.424 14.755 18.293 1.00 6.78 ? 2 DG A C2 1 ATOM 37 N N2 . DG A 1 2 ? -12.404 13.912 18.330 1.00 9.39 ? 2 DG A N2 1 ATOM 38 N N3 . DG A 1 2 ? -13.102 16.039 18.457 1.00 11.15 ? 2 DG A N3 1 ATOM 39 C C4 . DG A 1 2 ? -14.170 16.840 18.446 1.00 11.49 ? 2 DG A C4 1 ATOM 40 P P . DT A 1 3 ? -10.037 21.645 17.028 1.00 30.45 ? 3 DT A P 1 ATOM 41 O OP1 . DT A 1 3 ? -9.356 22.794 17.710 1.00 28.26 ? 3 DT A OP1 1 ATOM 42 O OP2 . DT A 1 3 ? -11.096 22.032 16.080 1.00 26.36 ? 3 DT A OP2 1 ATOM 43 O "O5'" . DT A 1 3 ? -8.966 20.640 16.318 1.00 16.10 ? 3 DT A "O5'" 1 ATOM 44 C "C5'" . DT A 1 3 ? -8.067 19.984 17.234 1.00 11.23 ? 3 DT A "C5'" 1 ATOM 45 C "C4'" . DT A 1 3 ? -8.053 18.541 16.784 1.00 13.65 ? 3 DT A "C4'" 1 ATOM 46 O "O4'" . DT A 1 3 ? -9.294 17.905 16.959 1.00 13.67 ? 3 DT A "O4'" 1 ATOM 47 C "C3'" . DT A 1 3 ? -7.747 18.336 15.302 1.00 15.75 ? 3 DT A "C3'" 1 ATOM 48 O "O3'" . DT A 1 3 ? -6.344 18.118 15.186 1.00 13.32 ? 3 DT A "O3'" 1 ATOM 49 C "C2'" . DT A 1 3 ? -8.468 17.036 14.947 1.00 22.49 ? 3 DT A "C2'" 1 ATOM 50 C "C1'" . DT A 1 3 ? -9.403 16.792 16.070 1.00 15.81 ? 3 DT A "C1'" 1 ATOM 51 N N1 . DT A 1 3 ? -10.816 16.742 15.662 1.00 12.60 ? 3 DT A N1 1 ATOM 52 C C2 . DT A 1 3 ? -11.337 15.461 15.487 1.00 13.55 ? 3 DT A C2 1 ATOM 53 O O2 . DT A 1 3 ? -10.628 14.461 15.614 1.00 13.21 ? 3 DT A O2 1 ATOM 54 N N3 . DT A 1 3 ? -12.668 15.355 15.180 1.00 8.93 ? 3 DT A N3 1 ATOM 55 C C4 . DT A 1 3 ? -13.469 16.437 15.053 1.00 7.85 ? 3 DT A C4 1 ATOM 56 O O4 . DT A 1 3 ? -14.685 16.232 14.783 1.00 12.62 ? 3 DT A O4 1 ATOM 57 C C5 . DT A 1 3 ? -12.906 17.748 15.180 1.00 8.47 ? 3 DT A C5 1 ATOM 58 C C7 . DT A 1 3 ? -13.772 18.967 15.032 1.00 16.18 ? 3 DT A C7 1 ATOM 59 C C6 . DT A 1 3 ? -11.606 17.835 15.493 1.00 12.62 ? 3 DT A C6 1 ATOM 60 P P . DA A 1 4 ? -5.682 18.045 13.735 1.00 16.93 ? 4 DA A P 1 ATOM 61 O OP1 . DA A 1 4 ? -4.251 18.227 14.032 1.00 27.70 ? 4 DA A OP1 1 ATOM 62 O OP2 . DA A 1 4 ? -6.425 18.970 12.894 1.00 15.41 ? 4 DA A OP2 1 ATOM 63 O "O5'" . DA A 1 4 ? -6.007 16.585 13.180 1.00 12.44 ? 4 DA A "O5'" 1 ATOM 64 C "C5'" . DA A 1 4 ? -5.439 15.422 13.825 1.00 11.88 ? 4 DA A "C5'" 1 ATOM 65 C "C4'" . DA A 1 4 ? -5.789 14.315 12.846 1.00 13.75 ? 4 DA A "C4'" 1 ATOM 66 O "O4'" . DA A 1 4 ? -7.176 14.105 12.878 1.00 17.58 ? 4 DA A "O4'" 1 ATOM 67 C "C3'" . DA A 1 4 ? -5.352 14.528 11.401 1.00 15.07 ? 4 DA A "C3'" 1 ATOM 68 O "O3'" . DA A 1 4 ? -4.853 13.228 10.957 1.00 20.32 ? 4 DA A "O3'" 1 ATOM 69 C "C2'" . DA A 1 4 ? -6.677 14.828 10.692 1.00 12.58 ? 4 DA A "C2'" 1 ATOM 70 C "C1'" . DA A 1 4 ? -7.691 14.080 11.533 1.00 8.71 ? 4 DA A "C1'" 1 ATOM 71 N N9 . DA A 1 4 ? -8.961 14.817 11.602 1.00 10.52 ? 4 DA A N9 1 ATOM 72 C C8 . DA A 1 4 ? -9.134 16.173 11.703 1.00 13.97 ? 4 DA A C8 1 ATOM 73 N N7 . DA A 1 4 ? -10.373 16.540 11.766 1.00 11.47 ? 4 DA A N7 1 ATOM 74 C C5 . DA A 1 4 ? -11.079 15.347 11.703 1.00 6.46 ? 4 DA A C5 1 ATOM 75 C C6 . DA A 1 4 ? -12.477 15.080 11.698 1.00 6.78 ? 4 DA A C6 1 ATOM 76 N N6 . DA A 1 4 ? -13.405 16.005 11.682 1.00 12.03 ? 4 DA A N6 1 ATOM 77 N N1 . DA A 1 4 ? -12.816 13.766 11.613 1.00 9.40 ? 4 DA A N1 1 ATOM 78 C C2 . DA A 1 4 ? -11.878 12.791 11.496 1.00 10.42 ? 4 DA A C2 1 ATOM 79 N N3 . DA A 1 4 ? -10.558 12.982 11.465 1.00 11.46 ? 4 DA A N3 1 ATOM 80 C C4 . DA A 1 4 ? -10.219 14.285 11.581 1.00 9.83 ? 4 DA A C4 1 ATOM 81 P P . DC A 1 5 ? -4.071 12.940 9.612 1.00 20.06 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? -3.233 11.738 9.893 1.00 26.61 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? -3.385 14.178 9.178 1.00 18.16 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? -5.223 12.545 8.559 1.00 18.14 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? -5.893 11.261 8.702 1.00 17.85 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? -7.053 11.399 7.781 1.00 14.01 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? -8.098 12.175 8.299 1.00 17.25 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? -6.744 11.942 6.389 1.00 13.96 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? -7.495 11.116 5.462 1.00 13.72 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? -7.338 13.338 6.479 1.00 9.20 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? -8.552 13.029 7.262 1.00 8.38 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? -9.325 14.170 7.722 1.00 10.67 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? -10.670 13.954 8.003 1.00 6.91 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? -11.149 12.830 7.950 1.00 12.99 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? -11.452 15.024 8.310 1.00 8.20 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? -10.947 16.271 8.395 1.00 8.46 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? -11.729 17.300 8.707 1.00 14.59 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? -9.569 16.495 8.151 1.00 11.46 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? -8.812 15.433 7.797 1.00 17.62 ? 5 DC A C6 1 ATOM 100 P P . DA A 1 6 ? -6.730 10.042 4.541 1.00 19.20 ? 6 DA A P 1 ATOM 101 O OP1 . DA A 1 6 ? -5.893 9.213 5.425 1.00 22.52 ? 6 DA A OP1 1 ATOM 102 O OP2 . DA A 1 6 ? -5.985 10.936 3.594 1.00 21.50 ? 6 DA A OP2 1 ATOM 103 O "O5'" . DA A 1 6 ? -7.885 9.258 3.790 1.00 12.44 ? 6 DA A "O5'" 1 ATOM 104 C "C5'" . DA A 1 6 ? -8.801 8.386 4.494 1.00 17.12 ? 6 DA A "C5'" 1 ATOM 105 C "C4'" . DA A 1 6 ? -9.801 7.918 3.467 1.00 12.07 ? 6 DA A "C4'" 1 ATOM 106 O "O4'" . DA A 1 6 ? -10.650 8.997 3.102 1.00 13.69 ? 6 DA A "O4'" 1 ATOM 107 C "C3'" . DA A 1 6 ? -9.202 7.375 2.170 1.00 9.56 ? 6 DA A "C3'" 1 ATOM 108 O "O3'" . DA A 1 6 ? -10.034 6.282 1.731 1.00 15.93 ? 6 DA A "O3'" 1 ATOM 109 C "C2'" . DA A 1 6 ? -9.230 8.577 1.249 1.00 14.11 ? 6 DA A "C2'" 1 ATOM 110 C "C1'" . DA A 1 6 ? -10.583 9.205 1.657 1.00 11.66 ? 6 DA A "C1'" 1 ATOM 111 N N9 . DA A 1 6 ? -10.474 10.664 1.588 1.00 5.06 ? 6 DA A N9 1 ATOM 112 C C8 . DA A 1 6 ? -9.375 11.449 1.609 1.00 9.36 ? 6 DA A C8 1 ATOM 113 N N7 . DA A 1 6 ? -9.628 12.738 1.604 1.00 13.40 ? 6 DA A N7 1 ATOM 114 C C5 . DA A 1 6 ? -11.023 12.788 1.561 1.00 11.85 ? 6 DA A C5 1 ATOM 115 C C6 . DA A 1 6 ? -11.931 13.890 1.509 1.00 5.03 ? 6 DA A C6 1 ATOM 116 N N6 . DA A 1 6 ? -11.541 15.145 1.487 1.00 8.68 ? 6 DA A N6 1 ATOM 117 N N1 . DA A 1 6 ? -13.237 13.556 1.461 1.00 7.20 ? 6 DA A N1 1 ATOM 118 C C2 . DA A 1 6 ? -13.668 12.270 1.487 1.00 5.85 ? 6 DA A C2 1 ATOM 119 N N3 . DA A 1 6 ? -12.864 11.200 1.509 1.00 8.95 ? 6 DA A N3 1 ATOM 120 C C4 . DA A 1 6 ? -11.553 11.522 1.530 1.00 6.41 ? 6 DA A C4 1 HETATM 121 C C1 . DM6 B 2 . ? -12.455 18.476 5.182 1.00 17.38 ? 7 DM6 A C1 1 HETATM 122 C C2 . DM6 B 2 . ? -11.236 19.166 5.198 1.00 14.64 ? 7 DM6 A C2 1 HETATM 123 C C3 . DM6 B 2 . ? -10.062 18.558 5.108 1.00 14.53 ? 7 DM6 A C3 1 HETATM 124 C C4 . DM6 B 2 . ? -9.992 17.168 4.949 1.00 11.39 ? 7 DM6 A C4 1 HETATM 125 C C5 . DM6 B 2 . ? -11.208 14.923 4.817 1.00 10.66 ? 7 DM6 A C5 1 HETATM 126 C C6 . DM6 B 2 . ? -12.508 12.875 4.732 1.00 9.73 ? 7 DM6 A C6 1 HETATM 127 C C7 . DM6 B 2 . ? -13.668 10.642 4.811 1.00 8.58 ? 7 DM6 A C7 1 HETATM 128 C C8 . DM6 B 2 . ? -14.993 10.012 4.483 1.00 8.97 ? 7 DM6 A C8 1 HETATM 129 C C9 . DM6 B 2 . ? -16.170 10.603 5.304 1.00 13.92 ? 7 DM6 A C9 1 HETATM 130 C C10 . DM6 B 2 . ? -16.299 12.096 4.928 1.00 14.10 ? 7 DM6 A C10 1 HETATM 131 C C11 . DM6 B 2 . ? -14.932 14.240 4.907 1.00 6.54 ? 7 DM6 A C11 1 HETATM 132 C C12 . DM6 B 2 . ? -13.713 16.395 5.050 1.00 8.64 ? 7 DM6 A C12 1 HETATM 133 C C13 . DM6 B 2 . ? -17.501 9.899 4.907 1.00 20.10 ? 7 DM6 A C13 1 HETATM 134 C C14 . DM6 B 2 . ? -18.185 9.336 6.161 1.00 27.41 ? 7 DM6 A C14 1 HETATM 135 C C15 . DM6 B 2 . ? -12.402 17.089 5.034 1.00 9.56 ? 7 DM6 A C15 1 HETATM 136 C C16 . DM6 B 2 . ? -11.214 16.414 4.922 1.00 16.97 ? 7 DM6 A C16 1 HETATM 137 C C17 . DM6 B 2 . ? -12.505 14.257 4.848 1.00 10.27 ? 7 DM6 A C17 1 HETATM 138 C C18 . DM6 B 2 . ? -13.705 14.935 4.949 1.00 6.44 ? 7 DM6 A C18 1 HETATM 139 C C19 . DM6 B 2 . ? -14.940 12.811 4.822 1.00 8.83 ? 7 DM6 A C19 1 HETATM 140 C C20 . DM6 B 2 . ? -13.758 12.141 4.764 1.00 5.83 ? 7 DM6 A C20 1 HETATM 141 C C21 . DM6 B 2 . ? -7.591 17.145 5.214 1.00 17.17 ? 7 DM6 A C21 1 HETATM 142 O O4 . DM6 B 2 . ? -8.857 16.470 4.901 1.00 17.09 ? 7 DM6 A O4 1 HETATM 143 O O5 . DM6 B 2 . ? -10.157 14.262 4.705 1.00 12.92 ? 7 DM6 A O5 1 HETATM 144 O O6 . DM6 B 2 . ? -11.387 12.127 4.727 1.00 13.78 ? 7 DM6 A O6 1 HETATM 145 O O7 . DM6 B 2 . ? -13.189 10.250 6.124 1.00 13.46 ? 7 DM6 A O7 1 HETATM 146 O O9 . DM6 B 2 . ? -16.055 10.533 6.727 1.00 10.90 ? 7 DM6 A O9 1 HETATM 147 O O11 . DM6 B 2 . ? -16.128 14.873 4.880 1.00 12.32 ? 7 DM6 A O11 1 HETATM 148 O O12 . DM6 B 2 . ? -14.769 17.036 5.023 1.00 14.41 ? 7 DM6 A O12 1 HETATM 149 O O13 . DM6 B 2 . ? -17.924 10.311 3.822 1.00 20.15 ? 7 DM6 A O13 1 HETATM 150 O O14 . DM6 B 2 . ? -19.009 8.272 5.685 1.00 26.06 ? 7 DM6 A O14 1 HETATM 151 C "C1'" . DM6 B 2 . ? -12.292 9.154 6.071 1.00 14.03 ? 7 DM6 A "C1'" 1 HETATM 152 C "C2'" . DM6 B 2 . ? -11.513 9.224 7.341 1.00 13.76 ? 7 DM6 A "C2'" 1 HETATM 153 C "C3'" . DM6 B 2 . ? -12.410 8.930 8.564 1.00 15.32 ? 7 DM6 A "C3'" 1 HETATM 154 C "C4'" . DM6 B 2 . ? -13.158 7.641 8.363 1.00 23.79 ? 7 DM6 A "C4'" 1 HETATM 155 C "C5'" . DM6 B 2 . ? -13.912 7.661 7.061 1.00 31.43 ? 7 DM6 A "C5'" 1 HETATM 156 C "C6'" . DM6 B 2 . ? -14.663 6.349 6.738 1.00 25.56 ? 7 DM6 A "C6'" 1 HETATM 157 O "O4'" . DM6 B 2 . ? -13.929 7.310 9.490 1.00 27.41 ? 7 DM6 A "O4'" 1 HETATM 158 O "O5'" . DM6 B 2 . ? -13.010 7.907 5.960 1.00 25.60 ? 7 DM6 A "O5'" 1 HETATM 159 N "N3'" . DM6 B 2 . ? -11.502 8.790 9.734 1.00 22.16 ? 7 DM6 A "N3'" 1 HETATM 160 O O . HOH C 3 . ? -19.376 11.777 25.068 1.00 28.52 ? 8 HOH A O 1 HETATM 161 O O . HOH C 3 . ? -8.081 14.615 2.668 1.00 22.44 ? 9 HOH A O 1 HETATM 162 O O . HOH C 3 . ? -10.533 21.093 13.254 1.00 37.25 ? 10 HOH A O 1 HETATM 163 O O . HOH C 3 . ? -5.296 15.758 7.326 1.00 19.79 ? 11 HOH A O 1 HETATM 164 O O . HOH C 3 . ? -14.038 8.625 1.159 1.00 23.57 ? 12 HOH A O 1 HETATM 165 O O . HOH C 3 . ? -7.983 21.236 12.814 1.00 39.09 ? 13 HOH A O 1 HETATM 166 O O . HOH C 3 . ? -7.089 18.706 9.993 1.00 29.69 ? 14 HOH A O 1 HETATM 167 O O . HOH C 3 . ? -16.501 21.730 19.039 1.00 34.11 ? 15 HOH A O 1 HETATM 168 O O . HOH C 3 . ? -17.101 17.342 14.651 1.00 25.42 ? 16 HOH A O 1 HETATM 169 O O . HOH C 3 . ? -11.298 18.897 11.862 1.00 31.00 ? 17 HOH A O 1 HETATM 170 O O . HOH C 3 . ? -12.665 8.910 11.978 1.00 31.06 ? 18 HOH A O 1 HETATM 171 O O . HOH C 3 . ? -8.566 21.850 19.907 1.00 27.32 ? 19 HOH A O 1 HETATM 172 O O . HOH C 3 . ? -19.415 14.733 15.630 1.00 40.81 ? 20 HOH A O 1 HETATM 173 O O . HOH C 3 . ? -16.571 19.286 5.595 1.00 34.79 ? 21 HOH A O 1 HETATM 174 O O . HOH C 3 . ? -9.322 17.011 1.419 1.00 34.53 ? 22 HOH A O 1 HETATM 175 O O . HOH C 3 . ? -10.740 19.791 8.972 1.00 42.82 ? 23 HOH A O 1 HETATM 176 O O . HOH C 3 . ? -19.140 17.874 18.319 1.00 38.90 ? 24 HOH A O 1 HETATM 177 O O . HOH C 3 . ? -9.829 10.463 9.750 1.00 21.30 ? 25 HOH A O 1 HETATM 178 O O . HOH C 3 . ? -20.939 18.846 24.374 1.00 39.68 ? 26 HOH A O 1 HETATM 179 O O . HOH C 3 . ? -21.746 12.413 24.136 1.00 67.73 ? 27 HOH A O 1 HETATM 180 O O . HOH C 3 . ? -3.290 17.143 16.477 1.00 71.46 ? 28 HOH A O 1 HETATM 181 O O . HOH C 3 . ? -13.424 6.739 3.144 1.00 54.10 ? 29 HOH A O 1 HETATM 182 O O . HOH C 3 . ? -18.586 5.671 6.712 1.00 33.35 ? 30 HOH A O 1 HETATM 183 O O . HOH C 3 . ? -15.560 9.272 -0.810 1.00 82.73 ? 31 HOH A O 1 HETATM 184 O O . HOH C 3 . ? -3.124 9.471 6.103 1.00 41.21 ? 32 HOH A O 1 HETATM 185 O O . HOH C 3 . ? -5.248 13.531 3.038 1.00 46.19 ? 33 HOH A O 1 HETATM 186 O O . HOH C 3 . ? -5.764 10.376 0.805 1.00 41.73 ? 34 HOH A O 1 HETATM 187 O O . HOH C 3 . ? -6.383 7.563 7.500 1.00 49.02 ? 35 HOH A O 1 HETATM 188 O O . HOH C 3 . ? -1.995 17.260 13.074 1.00 59.37 ? 36 HOH A O 1 HETATM 189 O O . HOH C 3 . ? -21.850 9.311 22.855 1.00 55.05 ? 37 HOH A O 1 HETATM 190 O O . HOH C 3 . ? -10.244 6.904 14.323 1.00 60.87 ? 38 HOH A O 1 HETATM 191 O O . HOH C 3 . ? -18.874 20.600 20.309 1.00 53.95 ? 39 HOH A O 1 HETATM 192 O O . HOH C 3 . ? -4.102 14.523 5.102 1.00 65.34 ? 40 HOH A O 1 #