0.035696
0.000000
0.000000
0.000000
0.035696
0.000000
0.000000
0.000000
0.018887
0.00000
0.00000
0.00000
Langlois D'Estaintot, B.
Gallois, B.
Brown, T.
Hunter, W.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.014
28.014
52.947
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H30 N O11 1
544.527
4'-EPIDOXORUBICIN
4'-EPIADRIAMYCIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
C
Y
113
N
C
N
114
S
C
N
115
N
C
N
116
S
C
N
117
N
C
Y
118
N
C
N
119
N
C
N
120
N
C
N
121
N
C
Y
122
N
C
Y
123
N
C
Y
124
N
C
Y
125
N
C
Y
126
N
C
Y
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
O
N
138
R
C
N
139
N
C
N
140
S
C
N
141
R
C
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
N
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
P
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
C
N
183
R
C
N
184
N
O
N
185
S
C
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
N
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
O
N
214
N
H
N
215
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
Y
125
N
doub
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
20
3561
3566
10.1093/nar/20.14.3561
1641324
The molecular structure of a 4'-epiadriamycin complex with d(TGATCA) at 1.7A resolution: comparison with the structure of 4'-epiadriamycin d(TGTACA) and d(CGATCG) complexes.
1992
10.2210/pdb1d58/pdb
pdb_00001d58
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295.00
1
DIFFRACTOMETER
RIGAKU AFC-5
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
1808.229
DNA (5'-D(*TP*GP*AP*TP*CP*A)-3')
1
syn
polymer
544.527
4'-EPIDOXORUBICIN
1
syn
non-polymer
18.015
water
34
nat
water
no
no
(DT)(DG)(DA)(DT)(DC)(DA)
TGATCA
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.87
57.18
VAPOR DIFFUSION
6.50
pH 6.50, VAPOR DIFFUSION, temperature 277.00K
277.00
WATER
1
MPD
1
NA CACODYLATE
1
MG ACETATE
1
SPERMINE
1
WATER
2
MPD
2
8.250
1
20
A
1
A
6
-0.714
A_DT1:DA6_A
1
0.544
-0.104
0.012
-0.211
-14.919
1
19
A
2
A
5
-1.356
A_DG2:DC5_A
2
1.507
-0.064
-0.261
-0.229
-9.697
1
20
A
3
A
4
2.866
A_DA3:DT4_A
3
-1.659
0.183
0.174
-0.153
9.697
1
20
A
4
A
3
2.866
A_DT4:DA3_A
4
-1.659
-0.183
0.174
-0.153
14.919
1
19
A
5
A
2
-1.356
A_DC5:DG2_A
5
1.507
0.064
-0.261
-0.229
-8.250
1
20
A
6
A
1
-0.714
A_DA6:DT1_A
6
0.544
0.104
0.012
-0.211
6.948
37.756
A
A
1
2
-3.495
A
A
6
5
6.976
-2.260
1.253
1.073
AA_DT1DG2:DC5DA6_AA
1
1.589
-2.457
37.658
2.280
-1.499
3.490
30.850
A
A
2
3
0.302
A
A
5
4
3.309
0.160
-1.224
0.396
AA_DG2DA3:DT4DC5_AA
2
-6.336
11.993
30.207
0.712
1.006
2.904
31.316
A
A
3
4
6.741
A
A
4
3
3.008
3.631
0.000
-0.746
AA_DA3DT4:DA3DT4_AA
3
0.000
0.000
31.110
-2.003
0.000
3.490
30.850
A
A
4
5
0.302
A
A
3
2
3.309
0.160
1.224
0.396
AA_DT4DC5:DG2DA3_AA
4
6.336
-11.993
30.207
0.712
-1.006
6.948
37.756
A
A
5
6
-3.495
A
A
2
1
6.976
-2.260
-1.253
1.073
AA_DC5DA6:DT1DG2_AA
5
-1.589
2.457
37.658
2.280
1.499
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1992-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1992-02-20
REL
REL
DM6
4'-EPIDOXORUBICIN
HOH
water
DM6
7
2
DM6
DM6
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
T
1
n
1
DT
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
A
6
n
6
DA
6
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.0140000000
28.0140000000
26.4735000000
1
-5.27
0.80
109.40
104.13
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
7.98
0.30
108.30
116.28
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-5.03
0.80
109.40
104.37
A
A
A
O5'
C5'
C4'
DA
DA
DA
3
3
3
N
1
4.03
0.60
118.60
122.63
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
1
14.41
0.30
108.30
122.71
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-6.93
0.80
109.40
102.47
A
A
A
O5'
C5'
C4'
DA
DA
DA
6
6
6
N
1
-7.35
0.70
108.00
100.65
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-3.49
0.50
129.30
125.81
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
1
-3.02
0.50
117.70
114.68
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
1
4.50
0.60
118.60
123.10
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
0.2020000
0.2020000
1.700
7.000
1694
1
2.000
TR
isotropic
TR
isotropic
TR
isotropic
1.700
7.000
34
193
39
120
0
fix
fix
fix
1.700
1D58
10067
5730
1
refinement
X-PLOR
THE MOLECULAR STRUCTURE OF A 4'-EPIADRIAMYCIN COMPLEX WITH D(TGATCA) AT 1.7 ANGSTROM RESOLUTION-COMPARISON WITH THE STRUCTURE OF 4'-EPIADRIAMYCIN D(TGTACA) AND D(CGATCG) COMPLEXES
1
N
N
2
N
N
3
N
N
hydrog
WATSON-CRICK
A
DT
1
A
N3
DT
1
1_555
A
DA
6
A
N1
DA
6
8_665
hydrog
WATSON-CRICK
A
DT
1
A
O4
DT
1
1_555
A
DA
6
A
N6
DA
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
4
A
N3
DT
4
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
4
A
O4
DT
4
8_665
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
3
A
N1
DA
3
8_665
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
3
A
N6
DA
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
A
DT
1
A
N3
DT
1
8_665
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
A
DT
1
A
O4
DT
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D58
PDB
1
1D58
1
6
1D58
1
6
1D58
A
1
1
6
BINDING SITE FOR RESIDUE DM6 A 7
A
DM6
7
Software
11
A
DT
1
A
DT
1
11
8_665
A
DG
2
A
DG
2
11
8_665
A
DA
3
A
DA
3
11
8_665
A
DT
4
A
DT
4
11
1_555
A
DT
4
A
DT
4
11
8_665
A
DC
5
A
DC
5
11
1_555
A
DA
6
A
DA
6
11
1_555
A
HOH
10
C
HOH
11
1_555
A
HOH
21
C
HOH
11
1_555
A
HOH
27
C
HOH
11
1_555
A
HOH
36
C
HOH
11
1_555
92
P 41 21 2