18.65 9.407 20.251 23.164 A O5' DT 1 ATOM A O5' DT 1 1 1.00 1 O 14.88 9.937 21.324 23.969 A C5' DT 1 ATOM A C5' DT 1 1 1.00 1 C 17.43 11.357 20.943 24.244 A C4' DT 1 ATOM A C4' DT 1 1 1.00 1 C 15.20 11.393 19.736 24.949 A O4' DT 1 ATOM A O4' DT 1 1 1.00 1 O 21.44 12.181 20.747 22.968 A C3' DT 1 ATOM A C3' DT 1 1 1.00 1 C 22.65 13.391 21.537 23.064 A O3' DT 1 ATOM A O3' DT 1 1 1.00 1 O 18.41 12.519 19.268 22.952 A C2' DT 1 ATOM A C2' DT 1 1 1.00 1 C 12.53 12.466 18.895 24.440 A C1' DT 1 ATOM A C1' DT 1 1 1.00 1 C 12.08 12.026 17.481 24.525 A N1 DT 1 ATOM A N1 DT 1 1 1.00 1 N 8.27 12.998 16.509 24.679 A C2 DT 1 ATOM A C2 DT 1 1 1.00 1 C 8.10 14.200 16.786 24.753 A O2 DT 1 ATOM A O2 DT 1 1 1.00 1 O 8.56 12.567 15.220 24.732 A N3 DT 1 ATOM A N3 DT 1 1 1.00 1 N 5.95 11.253 14.850 24.647 A C4 DT 1 ATOM A C4 DT 1 1 1.00 1 C 6.99 10.959 13.629 24.742 A O4 DT 1 ATOM A O4 DT 1 1 1.00 1 O 8.37 10.284 15.881 24.456 A C5 DT 1 ATOM A C5 DT 1 1 1.00 1 C 10.01 8.824 15.542 24.356 A C7 DT 1 ATOM A C7 DT 1 1 1.00 1 C 9.79 10.704 17.150 24.419 A C6 DT 1 ATOM A C6 DT 1 1 1.00 1 C 22.63 13.696 22.613 21.915 A P DG 2 ATOM A P DG 1 2 1.00 1 P 25.96 14.615 23.554 22.614 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 24.75 12.452 23.182 21.343 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 20.67 14.483 21.742 20.813 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 16.21 15.794 21.268 21.295 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 16.05 16.287 20.369 20.194 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 13.33 15.506 19.206 20.152 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 15.83 16.161 21.022 18.802 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 22.07 17.254 20.545 17.997 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 13.40 14.856 20.422 18.283 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 13.16 15.052 19.019 18.807 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 10.90 13.881 18.159 18.632 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 10.12 12.559 18.520 18.563 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 13.49 11.746 17.511 18.394 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 9.51 12.587 16.391 18.314 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 5.97 12.292 15.030 18.156 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 9.92 11.192 14.503 18.007 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 4.73 13.388 14.214 18.193 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 2.41 14.671 14.696 18.341 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 4.27 15.607 13.769 18.299 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 6.45 14.993 15.974 18.505 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 7.74 13.906 16.775 18.489 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 22.59 18.147 21.616 17.187 A P DA 3 ATOM A P DA 1 3 1.00 1 P 21.93 18.750 22.565 18.161 A OP1 DA 3 ATOM A OP1 DA 1 3 1.00 1 O 22.69 17.262 22.195 16.165 A OP2 DA 3 ATOM A OP2 DA 1 3 1.00 1 O 20.94 19.307 20.697 16.572 A O5' DA 3 ATOM A O5' DA 1 3 1.00 1 O 17.48 20.246 20.050 17.478 A C5' DA 3 ATOM A C5' DA 1 3 1.00 1 C 16.75 20.391 18.638 16.927 A C4' DA 3 ATOM A C4' DA 1 3 1.00 1 C 12.71 19.215 17.884 17.160 A O4' DA 3 ATOM A O4' DA 1 3 1.00 1 O 15.49 20.660 18.624 15.434 A C3' DA 3 ATOM A C3' DA 1 3 1.00 1 C 17.15 21.969 18.204 15.116 A O3' DA 3 ATOM A O3' DA 1 3 1.00 1 O 17.23 19.573 17.753 14.852 A C2' DA 3 ATOM A C2' DA 1 3 1.00 1 C 14.69 19.007 16.993 16.032 A C1' DA 3 ATOM A C1' DA 1 3 1.00 1 C 10.67 17.559 16.940 15.768 A N9 DA 3 ATOM A N9 DA 1 3 1.00 1 N 13.40 16.663 17.974 15.741 A C8 DA 3 ATOM A C8 DA 1 3 1.00 1 C 12.18 15.439 17.582 15.460 A N7 DA 3 ATOM A N7 DA 1 3 1.00 1 N 10.12 15.556 16.229 15.286 A C5 DA 3 ATOM A C5 DA 1 3 1.00 1 C 8.36 14.609 15.228 14.947 A C6 DA 3 ATOM A C6 DA 1 3 1.00 1 C 9.99 13.307 15.444 14.783 A N6 DA 3 ATOM A N6 DA 1 3 1.00 1 N 7.43 15.111 13.968 14.857 A N1 DA 3 ATOM A N1 DA 1 3 1.00 1 N 8.78 16.413 13.690 15.053 A C2 DA 3 ATOM A C2 DA 1 3 1.00 1 C 8.72 17.372 14.564 15.355 A N3 DA 3 ATOM A N3 DA 1 3 1.00 1 N 9.95 16.859 15.822 15.450 A C4 DA 3 ATOM A C4 DA 1 3 1.00 1 C 17.90 22.445 18.142 13.570 A P DT 4 ATOM A P DT 1 4 1.00 1 P 23.54 23.932 18.271 13.586 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 18.24 21.669 19.178 12.877 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 16.68 21.983 16.671 13.104 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 17.04 22.551 15.492 13.708 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 17.66 22.008 14.304 12.940 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 17.92 20.615 14.259 13.051 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 18.19 22.344 14.265 11.458 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 20.28 23.042 13.071 11.124 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 16.20 21.008 14.399 10.764 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 15.09 20.024 13.867 11.765 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 10.65 18.716 14.553 11.728 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 10.26 17.582 13.772 11.664 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 13.68 17.666 12.547 11.564 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 7.99 16.380 14.419 11.696 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 8.64 16.240 15.761 11.781 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 6.97 15.071 16.259 11.791 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 9.30 17.439 16.542 11.860 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 9.36 17.385 18.035 11.998 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 9.41 18.615 15.912 11.844 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 22.87 23.801 12.777 9.758 A P DC 5 ATOM A P DC 1 5 1.00 1 P 24.38 24.641 11.561 9.981 A OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 24.01 24.563 13.976 9.361 A OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 20.78 22.624 12.444 8.715 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 16.43 21.974 11.150 8.789 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 15.90 20.876 11.194 7.767 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 15.13 19.786 11.973 8.297 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 15.01 21.243 11.816 6.417 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 18.25 20.473 11.133 5.395 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 12.44 20.699 13.251 6.565 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 11.42 19.506 13.007 7.450 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 11.49 18.702 14.139 7.841 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 9.30 17.338 13.920 8.043 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 9.34 16.892 12.788 8.037 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 7.23 16.548 14.993 8.276 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 6.20 17.032 16.240 8.355 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 5.01 16.226 17.259 8.599 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 7.91 18.422 16.467 8.164 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 9.47 19.204 15.413 7.910 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 20.50 21.125 9.945 4.590 A P DA 6 ATOM A P DA 1 6 1.00 1 P 23.21 21.716 8.973 5.559 A OP1 DA 6 ATOM A OP1 DA 1 6 1.00 1 O 18.37 22.008 10.623 3.638 A OP2 DA 6 ATOM A OP2 DA 1 6 1.00 1 O 16.79 20.008 9.163 3.796 A O5' DA 6 ATOM A O5' DA 1 6 1.00 1 O 17.91 19.080 8.337 4.527 A C5' DA 6 ATOM A C5' DA 1 6 1.00 1 C 12.78 18.094 7.922 3.452 A C4' DA 6 ATOM A C4' DA 1 6 1.00 1 C 10.65 17.318 9.015 3.050 A O4' DA 6 ATOM A O4' DA 1 6 1.00 1 O 10.96 18.725 7.314 2.197 A C3' DA 6 ATOM A C3' DA 1 6 1.00 1 C 13.45 17.845 6.272 1.747 A O3' DA 6 ATOM A O3' DA 1 6 1.00 1 O 8.67 18.708 8.511 1.244 A C2' DA 6 ATOM A C2' DA 1 6 1.00 1 C 8.08 17.411 9.208 1.599 A C1' DA 6 ATOM A C1' DA 1 6 1.00 1 C 7.70 17.500 10.673 1.525 A N9 DA 6 ATOM A N9 DA 1 6 1.00 1 N 9.03 18.629 11.460 1.615 A C8 DA 6 ATOM A C8 DA 1 6 1.00 1 C 6.53 18.352 12.730 1.620 A N7 DA 6 ATOM A N7 DA 1 6 1.00 1 N 8.11 16.976 12.794 1.567 A C5 DA 6 ATOM A C5 DA 1 6 1.00 1 C 5.51 16.097 13.884 1.509 A C6 DA 6 ATOM A C6 DA 1 6 1.00 1 C 6.78 16.523 15.128 1.488 A N6 DA 6 ATOM A N6 DA 1 6 1.00 1 N 6.06 14.763 13.545 1.461 A N1 DA 6 ATOM A N1 DA 1 6 1.00 1 N 2.82 14.352 12.270 1.424 A C2 DA 6 ATOM A C2 DA 1 6 1.00 1 C 5.46 15.125 11.217 1.440 A N3 DA 6 ATOM A N3 DA 1 6 1.00 1 N 6.29 16.436 11.531 1.525 A C4 DA 6 ATOM A C4 DA 1 6 1.00 1 C 8.62 15.581 18.380 5.168 A C1 DM6 7 HETATM B C1 DM6 2 1.00 1 C 9.93 16.657 19.089 5.189 A C2 DM6 7 HETATM B C2 DM6 2 1.00 1 C 10.26 17.820 18.419 5.078 A C3 DM6 7 HETATM B C3 DM6 2 1.00 1 C 8.03 17.878 17.153 4.961 A C4 DM6 7 HETATM B C4 DM6 2 1.00 1 C 6.18 16.789 14.850 4.834 A C5 DM6 7 HETATM B C5 DM6 2 1.00 1 C 7.43 15.509 12.783 4.771 A C6 DM6 7 HETATM B C6 DM6 2 1.00 1 C 9.59 14.240 10.595 4.797 A C7 DM6 7 HETATM B C7 DM6 2 1.00 1 C 9.11 12.861 10.035 4.596 A C8 DM6 7 HETATM B C8 DM6 2 1.00 1 C 10.41 11.853 10.724 5.385 A C9 DM6 7 HETATM B C9 DM6 2 1.00 1 C 9.04 11.788 12.046 4.781 A C10 DM6 7 HETATM B C10 DM6 2 1.00 1 C 8.04 13.127 14.153 4.924 A C11 DM6 7 HETATM B C11 DM6 2 1.00 1 C 6.71 14.256 16.271 5.025 A C12 DM6 7 HETATM B C12 DM6 2 1.00 1 C 11.80 10.567 9.953 4.876 A C13 DM6 7 HETATM B C13 DM6 2 1.00 1 C 13.13 10.141 8.653 5.422 A C14 DM6 7 HETATM B C14 DM6 2 1.00 1 C 6.62 15.531 16.988 5.046 A C15 DM6 7 HETATM B C15 DM6 2 1.00 1 C 8.14 16.752 16.369 4.940 A C16 DM6 7 HETATM B C16 DM6 2 1.00 1 C 6.89 15.478 14.181 4.892 A C17 DM6 7 HETATM B C17 DM6 2 1.00 1 C 6.19 14.273 14.884 4.903 A C18 DM6 7 HETATM B C18 DM6 2 1.00 1 C 8.90 13.032 12.760 4.829 A C19 DM6 7 HETATM B C19 DM6 2 1.00 1 C 7.24 14.214 12.105 4.755 A C20 DM6 7 HETATM B C20 DM6 2 1.00 1 C 10.43 20.394 17.360 4.802 A C21 DM6 7 HETATM B C21 DM6 2 1.00 1 C 9.67 19.114 16.576 4.829 A O4 DM6 7 HETATM B O4 DM6 2 1.00 1 O 9.90 17.901 14.189 4.564 A O5 DM6 7 HETATM B O5 DM6 2 1.00 1 O 9.11 16.657 12.099 4.691 A O6 DM6 7 HETATM B O6 DM6 2 1.00 1 O 11.86 14.808 10.043 5.951 A O7 DM6 7 HETATM B O7 DM6 2 1.00 1 O 7.90 11.979 10.648 6.724 A O9 DM6 7 HETATM B O9 DM6 2 1.00 1 O 9.44 11.970 14.943 4.871 A O11 DM6 7 HETATM B O11 DM6 2 1.00 1 O 11.57 13.228 16.937 4.972 A O12 DM6 7 HETATM B O12 DM6 2 1.00 1 O 14.72 9.883 10.175 3.828 A O13 DM6 7 HETATM B O13 DM6 2 1.00 1 O 19.81 8.847 8.474 5.798 A O14 DM6 7 HETATM B O14 DM6 2 1.00 1 O 13.18 15.733 8.903 6.295 A C1' DM6 7 HETATM B C1' DM6 2 1.00 1 C 14.34 16.797 9.460 7.238 A C2' DM6 7 HETATM B C2' DM6 2 1.00 1 C 16.36 16.341 9.463 8.651 A C3' DM6 7 HETATM B C3' DM6 2 1.00 1 C 16.16 15.576 8.261 9.128 A C4' DM6 7 HETATM B C4' DM6 2 1.00 1 C 17.45 14.503 8.146 8.127 A C5' DM6 7 HETATM B C5' DM6 2 1.00 1 C 15.28 13.483 7.298 8.752 A C6' DM6 7 HETATM B C6' DM6 2 1.00 1 C 19.93 15.167 8.466 10.404 A O4' DM6 7 HETATM B O4' DM6 2 1.00 1 O 16.46 14.861 7.942 6.767 A O5' DM6 7 HETATM B O5' DM6 2 1.00 1 O 14.01 17.447 9.939 9.589 A N3' DM6 7 HETATM B N3' DM6 2 1.00 1 N 20.96 8.519 12.001 25.134 A O HOH 8 HETATM C O HOH 3 1.00 1 O 25.81 17.999 20.134 8.699 A O HOH 9 HETATM C O HOH 3 1.00 1 O 53.67 16.964 9.544 12.354 A O HOH 10 HETATM C O HOH 3 1.00 1 O 15.74 13.637 8.824 1.239 A O HOH 11 HETATM C O HOH 3 1.00 1 O 47.10 16.293 18.831 25.393 A O HOH 12 HETATM C O HOH 3 1.00 1 O 52.30 9.152 5.762 3.791 A O HOH 13 HETATM C O HOH 3 1.00 1 O 26.41 20.277 14.480 2.547 A O HOH 14 HETATM C O HOH 3 1.00 1 O 24.35 19.957 20.173 1.493 A O HOH 15 HETATM C O HOH 3 1.00 1 O 35.60 18.150 17.363 1.472 A O HOH 16 HETATM C O HOH 3 1.00 1 O 40.76 9.021 17.486 18.134 A O HOH 17 HETATM C O HOH 3 1.00 1 O 56.12 6.068 13.150 23.354 A O HOH 18 HETATM C O HOH 3 1.00 1 O 32.79 13.066 18.946 14.677 A O HOH 19 HETATM C O HOH 3 1.00 1 O 35.42 11.085 21.406 19.326 A O HOH 20 HETATM C O HOH 3 1.00 1 O 30.21 9.082 5.552 6.660 A O HOH 21 HETATM C O HOH 3 1.00 1 O 40.94 7.312 19.024 24.594 A O HOH 22 HETATM C O HOH 3 1.00 1 O 30.99 22.624 15.738 7.683 A O HOH 23 HETATM C O HOH 3 1.00 1 O 61.70 23.778 13.422 4.188 A O HOH 24 HETATM C O HOH 3 1.00 1 O 65.14 21.066 17.086 0.995 A O HOH 25 HETATM C O HOH 3 1.00 1 O 59.03 13.522 25.874 24.250 A O HOH 26 HETATM C O HOH 3 1.00 1 O 48.67 11.844 19.464 5.914 A O HOH 27 HETATM C O HOH 3 1.00 1 O 38.90 14.606 20.400 8.084 A O HOH 28 HETATM C O HOH 3 1.00 1 O 44.85 18.671 6.639 7.932 A O HOH 29 HETATM C O HOH 3 1.00 1 O 49.59 24.641 8.513 9.347 A O HOH 30 HETATM C O HOH 3 1.00 1 O 48.96 24.448 8.987 6.407 A O HOH 31 HETATM C O HOH 3 1.00 1 O 40.01 20.898 18.212 10.372 A O HOH 32 HETATM C O HOH 3 1.00 1 O 34.80 10.679 17.198 14.915 A O HOH 33 HETATM C O HOH 3 1.00 1 O 48.87 17.630 25.050 19.910 A O HOH 34 HETATM C O HOH 3 1.00 1 O 56.29 24.798 16.722 9.578 A O HOH 35 HETATM C O HOH 3 1.00 1 O 53.35 19.767 8.715 10.330 A O HOH 36 HETATM C O HOH 3 1.00 1 O 56.06 13.794 18.652 11.495 A O HOH 37 HETATM C O HOH 3 1.00 1 O 65.69 23.000 12.576 0.392 A O HOH 38 HETATM C O HOH 3 1.00 1 O 33.94 14.761 6.222 1.991 A O HOH 39 HETATM C O HOH 3 1.00 1 O 45.90 16.912 6.093 11.844 A O HOH 40 HETATM C O HOH 3 1.00 1 O 36.25 19.321 21.226 13.104 A O HOH 41 HETATM C O HOH 3 1.00 1 O 0.035696 0.000000 0.000000 0.000000 0.035696 0.000000 0.000000 0.000000 0.018887 0.00000 0.00000 0.00000 Langlois D'Estaintot, B. Gallois, B. Brown, T. Hunter, W.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 28.014 28.014 52.947 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H30 N O11 1 544.527 4'-EPIDOXORUBICIN 4'-EPIADRIAMYCIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N C Y 113 N C N 114 S C N 115 N C N 116 S C N 117 N C Y 118 N C N 119 N C N 120 N C N 121 N C Y 122 N C Y 123 N C Y 124 N C Y 125 N C Y 126 N C Y 127 N C N 128 N C N 129 N O N 130 N O N 131 N O N 132 N O N 133 N O N 134 N O N 135 N O N 136 N O N 137 N O N 138 R C N 139 N C N 140 S C N 141 R C N 142 S C N 143 N C N 144 N O N 145 N O N 146 N N N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N O N 178 N P N 179 N O N 180 N O N 181 N O N 182 N C N 183 R C N 184 N O N 185 S C N 186 N O N 187 N C N 188 R C N 189 N N N 190 N C N 191 N O N 192 N N N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N O N 214 N H N 215 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub Y 125 N doub Y 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N doub Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing Y 152 N doub Y 153 N sing Y 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 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NARHAD 0389 0305-1048 20 3561 3566 10.1093/nar/20.14.3561 1641324 The molecular structure of a 4'-epiadriamycin complex with d(TGATCA) at 1.7A resolution: comparison with the structure of 4'-epiadriamycin d(TGTACA) and d(CGATCG) complexes. 1992 10.2210/pdb1d58/pdb pdb_00001d58 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295.00 1 DIFFRACTOMETER RIGAKU AFC-5 x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 1808.229 DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') 1 syn polymer 544.527 4'-EPIDOXORUBICIN 1 syn non-polymer 18.015 water 34 nat water no no (DT)(DG)(DA)(DT)(DC)(DA) TGATCA A polydeoxyribonucleotide n n n n n n 2.87 57.18 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 MPD 1 NA CACODYLATE 1 MG ACETATE 1 SPERMINE 1 WATER 2 MPD 2 8.250 1 20 A 1 A 6 -0.714 A_DT1:DA6_A 1 0.544 -0.104 0.012 -0.211 -14.919 1 19 A 2 A 5 -1.356 A_DG2:DC5_A 2 1.507 -0.064 -0.261 -0.229 -9.697 1 20 A 3 A 4 2.866 A_DA3:DT4_A 3 -1.659 0.183 0.174 -0.153 9.697 1 20 A 4 A 3 2.866 A_DT4:DA3_A 4 -1.659 -0.183 0.174 -0.153 14.919 1 19 A 5 A 2 -1.356 A_DC5:DG2_A 5 1.507 0.064 -0.261 -0.229 -8.250 1 20 A 6 A 1 -0.714 A_DA6:DT1_A 6 0.544 0.104 0.012 -0.211 6.948 37.756 A A 1 2 -3.495 A A 6 5 6.976 -2.260 1.253 1.073 AA_DT1DG2:DC5DA6_AA 1 1.589 -2.457 37.658 2.280 -1.499 3.490 30.850 A A 2 3 0.302 A A 5 4 3.309 0.160 -1.224 0.396 AA_DG2DA3:DT4DC5_AA 2 -6.336 11.993 30.207 0.712 1.006 2.904 31.316 A A 3 4 6.741 A A 4 3 3.008 3.631 0.000 -0.746 AA_DA3DT4:DA3DT4_AA 3 0.000 0.000 31.110 -2.003 0.000 3.490 30.850 A A 4 5 0.302 A A 3 2 3.309 0.160 1.224 0.396 AA_DT4DC5:DG2DA3_AA 4 6.336 -11.993 30.207 0.712 -1.006 6.948 37.756 A A 5 6 -3.495 A A 2 1 6.976 -2.260 -1.253 1.073 AA_DC5DA6:DT1DG2_AA 5 -1.589 2.457 37.658 2.280 1.499 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1992-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1992-02-20 REL REL DM6 4'-EPIDOXORUBICIN HOH water DM6 7 2 DM6 DM6 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A T 1 n 1 DT 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A A 6 n 6 DA 6 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 28.0140000000 28.0140000000 26.4735000000 1 -5.27 0.80 109.40 104.13 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 7.98 0.30 108.30 116.28 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -5.03 0.80 109.40 104.37 A A A O5' C5' C4' DA DA DA 3 3 3 N 1 4.03 0.60 118.60 122.63 A A A C6 N1 C2 DA DA DA 3 3 3 N 1 14.41 0.30 108.30 122.71 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 -6.93 0.80 109.40 102.47 A A A O5' C5' C4' DA DA DA 6 6 6 N 1 -7.35 0.70 108.00 100.65 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 -3.49 0.50 129.30 125.81 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 -3.02 0.50 117.70 114.68 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 4.50 0.60 118.60 123.10 A A A N1 C6 N6 DA DA DA 6 6 6 N 0.2020000 0.2020000 1.700 7.000 1694 1 2.000 TR isotropic TR isotropic TR isotropic 1.700 7.000 34 193 39 120 0 fix fix fix 1.700 1D58 10067 5730 1 refinement X-PLOR THE MOLECULAR STRUCTURE OF A 4'-EPIADRIAMYCIN COMPLEX WITH D(TGATCA) AT 1.7 ANGSTROM RESOLUTION-COMPARISON WITH THE STRUCTURE OF 4'-EPIADRIAMYCIN D(TGTACA) AND D(CGATCG) COMPLEXES 1 N N 2 N N 3 N N hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 A DA 6 A N1 DA 6 8_665 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 A DA 6 A N6 DA 6 8_665 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 8_665 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 A DT 4 A N3 DT 4 8_665 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 A DT 4 A O4 DT 4 8_665 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 3 A N1 DA 3 8_665 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 3 A N6 DA 3 8_665 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 8_665 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 A DT 1 A N3 DT 1 8_665 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 A DT 1 A O4 DT 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D58 PDB 1 1D58 1 6 1D58 1 6 1D58 A 1 1 6 BINDING SITE FOR RESIDUE DM6 A 7 A DM6 7 Software 11 A DT 1 A DT 1 11 8_665 A DG 2 A DG 2 11 8_665 A DA 3 A DA 3 11 8_665 A DT 4 A DT 4 11 1_555 A DT 4 A DT 4 11 8_665 A DC 5 A DC 5 11 1_555 A DA 6 A DA 6 11 1_555 A HOH 10 C HOH 11 1_555 A HOH 21 C HOH 11 1_555 A HOH 27 C HOH 11 1_555 A HOH 36 C HOH 11 1_555 92 P 41 21 2