1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Vita, C.
Drakopoulou, E.
Vizzanova, J.
Rochette, S.
Martin, L.
Menez, A.
Roumestand, C.
Yang, Y.S.
Ylisastigui, L.
Benjouad, A.
Gluckman, J.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
13091
13096
10.1073/pnas.96.23.13091
10557278
Rational engineering of a miniprotein that reproduces the core of the CD4 site interacting with HIV-1 envelope glycoprotein.
1999
10.2210/pdb1d5q/pdb
pdb_00001d5q
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2741.264
CHIMERIC MINI-PROTEIN
1
syn
polymer
no
no
CNLARCQLSCKSLGLKGGCQGSFCTCG
CNLARCQLSCKSLGLKGGCQGSFCTCG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-10-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
1999-10-11
REL
SYNTHETIC MINIPROTEIN (SOLID PHASE METHOD USING FMOC-PROTECTED AMINO ACIDS)
sample
ADDITIONAL EXPERIMENTS (2D NOESY, 2D DQF-COSY) RECORDED AT 35 C
LOWEST ENERGY
40
1
2D NOESY
DQF-COSY
3.5
1
atm
298
K
THE STRUCTURE IS BASED ON A TOTAL OF 239 DISTANCE RESTRAINTS, 46 ANGULAR RESTRAINTS, AND 9 ADDITIONAL RESTRAINTS FOR THE DISULFIDE BRIDGES
SIMULATED ANNEALING, MOLECULAR DYNAMICS
1
closest to the average, fewest violations, lowest energy
H2O AND D2O
PONS, J.L.,MALLIAVIN, T., DELSUC, M.A.
processing
Gifa
4.22
PONS, J.L.,MALLIAVIN, T., DELSUC, M.A.
data analysis
Gifa
4.22
BRUNGER, A.T.
structure solution
X-PLOR
3.1
BRUNGER, A.T.
refinement
X-PLOR
3.1
600
Bruker
AMX
CYS
1
n
1
CYS
1
A
ASN
2
n
2
ASN
2
A
LEU
3
n
3
LEU
3
A
ALA
4
n
4
ALA
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLN
7
n
7
GLN
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
CYS
10
n
10
CYS
10
A
LYS
11
n
11
LYS
11
A
SER
12
n
12
SER
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
GLY
17
n
17
GLY
17
A
GLY
18
n
18
GLY
18
A
CYS
19
n
19
CYS
19
A
GLN
20
n
20
GLN
20
A
GLY
21
n
21
GLY
21
A
SER
22
n
22
SER
22
A
PHE
23
n
23
PHE
23
A
CYS
24
n
24
CYS
24
A
THR
25
n
25
THR
25
A
CYS
26
n
26
CYS
26
A
GLY
27
n
27
GLY
27
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
20
A
N
GLN
20
A
O
PHE
23
A
O
PHE
23
1
A
ARG
5
0.315
SIDE CHAIN
SOLUTION STRUCTURE OF A MINI-PROTEIN REPRODUCING THE CORE OF THE CD4 SURFACE INTERACTING WITH THE HIV-1 ENVELOPE GLYCOPROTEIN
1
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
14
A
GLY
14
1
1
13
disulf
2.021
A
CYS
1
A
SG
CYS
1
1_555
A
CYS
19
A
SG
CYS
19
1_555
disulf
2.018
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
24
A
SG
CYS
24
1_555
disulf
2.020
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
26
A
SG
CYS
26
1_555
BINDING PROTEIN
ALPHA-BETA STRUCTURE, CHARYBDOTOXIN-LIKE MOTIF, BINDING PROTEIN
1D5Q
PDB
1
1D5Q
1
27
1D5Q
1
27
1D5Q
A
1
1
27
2
anti-parallel
A
GLY
17
A
GLY
17
A
GLN
20
A
GLN
20
A
PHE
23
A
PHE
23
A
CYS
26
A
CYS
26
1
P 1