1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Vita, C. Drakopoulou, E. Vizzanova, J. Rochette, S. Martin, L. Menez, A. Roumestand, C. Yang, Y.S. Ylisastigui, L. Benjouad, A. Gluckman, J.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 96 13091 13096 10.1073/pnas.96.23.13091 10557278 Rational engineering of a miniprotein that reproduces the core of the CD4 site interacting with HIV-1 envelope glycoprotein. 1999 10.2210/pdb1d5q/pdb pdb_00001d5q 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2741.264 CHIMERIC MINI-PROTEIN 1 syn polymer no no CNLARCQLSCKSLGLKGGCQGSFCTCG CNLARCQLSCKSLGLKGGCQGSFCTCG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-10-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 1999-10-11 REL SYNTHETIC MINIPROTEIN (SOLID PHASE METHOD USING FMOC-PROTECTED AMINO ACIDS) sample ADDITIONAL EXPERIMENTS (2D NOESY, 2D DQF-COSY) RECORDED AT 35 C LOWEST ENERGY 40 1 2D NOESY DQF-COSY 3.5 1 atm 298 K THE STRUCTURE IS BASED ON A TOTAL OF 239 DISTANCE RESTRAINTS, 46 ANGULAR RESTRAINTS, AND 9 ADDITIONAL RESTRAINTS FOR THE DISULFIDE BRIDGES SIMULATED ANNEALING, MOLECULAR DYNAMICS 1 closest to the average, fewest violations, lowest energy H2O AND D2O PONS, J.L.,MALLIAVIN, T., DELSUC, M.A. processing Gifa 4.22 PONS, J.L.,MALLIAVIN, T., DELSUC, M.A. data analysis Gifa 4.22 BRUNGER, A.T. structure solution X-PLOR 3.1 BRUNGER, A.T. refinement X-PLOR 3.1 600 Bruker AMX CYS 1 n 1 CYS 1 A ASN 2 n 2 ASN 2 A LEU 3 n 3 LEU 3 A ALA 4 n 4 ALA 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLN 7 n 7 GLN 7 A LEU 8 n 8 LEU 8 A SER 9 n 9 SER 9 A CYS 10 n 10 CYS 10 A LYS 11 n 11 LYS 11 A SER 12 n 12 SER 12 A LEU 13 n 13 LEU 13 A GLY 14 n 14 GLY 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A GLY 17 n 17 GLY 17 A GLY 18 n 18 GLY 18 A CYS 19 n 19 CYS 19 A GLN 20 n 20 GLN 20 A GLY 21 n 21 GLY 21 A SER 22 n 22 SER 22 A PHE 23 n 23 PHE 23 A CYS 24 n 24 CYS 24 A THR 25 n 25 THR 25 A CYS 26 n 26 CYS 26 A GLY 27 n 27 GLY 27 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 20 A N GLN 20 A O PHE 23 A O PHE 23 1 A ARG 5 0.315 SIDE CHAIN SOLUTION STRUCTURE OF A MINI-PROTEIN REPRODUCING THE CORE OF THE CD4 SURFACE INTERACTING WITH THE HIV-1 ENVELOPE GLYCOPROTEIN 1 N N A ASN 2 A ASN 2 HELX_P A GLY 14 A GLY 14 1 1 13 disulf 2.021 A CYS 1 A SG CYS 1 1_555 A CYS 19 A SG CYS 19 1_555 disulf 2.018 A CYS 6 A SG CYS 6 1_555 A CYS 24 A SG CYS 24 1_555 disulf 2.020 A CYS 10 A SG CYS 10 1_555 A CYS 26 A SG CYS 26 1_555 BINDING PROTEIN ALPHA-BETA STRUCTURE, CHARYBDOTOXIN-LIKE MOTIF, BINDING PROTEIN 1D5Q PDB 1 1D5Q 1 27 1D5Q 1 27 1D5Q A 1 1 27 2 anti-parallel A GLY 17 A GLY 17 A GLN 20 A GLN 20 A PHE 23 A PHE 23 A CYS 26 A CYS 26 1 P 1