0.030093
0.017374
0.000000
0.000000
0.034749
0.000000
0.000000
0.000000
0.010552
0.00000
0.00000
0.00000
Lipanov, A.
Kopka, M.L.
Kaczor-Grzeskowiak, M.
Quintana, J.
Dickerson, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
33.230
33.230
94.770
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H13 N4 O7 P
332.207
y
2'-DEOXYINOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
Y
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
O
N
144
N
P
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
C
N
149
R
C
N
150
N
O
N
151
S
C
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
N
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
sing
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
32
1373
1389
10.1021/bi00056a024
8448146
Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
1993
10.2210/pdb1d60/pdb
pdb_00001d60
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
248.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
3029.990
DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3')
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
42
nat
water
no
no
(DC)(DC)(DA)(DA)(DC)(DI)(DT)(DT)(DG)(DG)
CCAACITTGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
2.49
50.65
VAPOR DIFFUSION, SITTING DROP
7.00
pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
277.00
WATER
1
MPD
1
MG ACETATE
1
NA CACODYLATE
1
SPERMINE
1
WATER
2
MPD
2
-2.681
1
19
A
1
B
20
-3.076
A_DC1:DG20_B
1
-2.407
-0.208
0.507
-0.364
13.463
1
19
A
2
B
19
-2.660
A_DC2:DG19_B
2
-8.175
0.597
-0.796
-0.507
0.176
1
20
A
3
B
18
0.513
A_DA3:DT18_B
3
-7.383
-0.601
-0.167
-0.459
3.565
1
20
A
4
B
17
1.639
A_DA4:DT17_B
4
-13.523
0.011
0.160
-0.200
-8.754
1
20
A
7
B
14
-7.945
A_DT7:DA14_B
5
-9.301
-0.474
-0.116
-0.206
-7.927
1
20
A
8
B
13
2.981
A_DT8:DA13_B
6
-10.534
0.465
0.032
-0.114
-3.857
1
19
A
9
B
12
-0.698
A_DG9:DC12_B
7
0.462
0.324
-0.282
-0.169
7.320
1
19
A
10
B
11
1.380
A_DG10:DC11_B
8
-5.135
0.310
0.046
-0.160
2.755
33.616
A
A
1
2
8.651
B
B
20
19
2.857
4.862
0.252
0.320
AA_DC1DC2:DG19DG20_BB
1
13.005
-23.142
30.691
-0.161
1.476
3.748
30.927
A
A
2
3
14.397
B
B
19
18
3.731
7.587
0.265
0.742
AA_DC2DA3:DT18DG19_BB
2
-3.444
6.535
29.810
-0.320
-1.274
3.234
40.035
A
A
3
4
2.870
B
B
18
17
3.230
1.961
-0.113
0.258
AA_DA3DA4:DT17DT18_BB
3
-4.099
5.999
39.787
0.154
-0.299
3.256
39.630
A
A
7
8
-0.811
B
B
14
13
3.263
-0.550
0.330
0.039
AA_DT7DT8:DA13DA14_BB
4
-0.723
1.067
39.620
0.122
-0.571
3.420
34.770
A
A
8
9
10.356
B
B
13
12
3.288
6.149
0.291
0.982
AA_DT8DG9:DC12DA13_BB
5
3.356
-5.652
34.079
0.670
0.044
3.263
30.691
A
A
9
10
2.168
B
B
12
11
3.219
1.146
-0.283
0.946
AA_DG9DG10:DC11DC12_BB
6
-2.177
4.117
30.595
1.563
0.110
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1993-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1992-02-26
REL
REL
MG
MAGNESIUM ION
HOH
water
MO6
21
2
MG
MG
21
B
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
28
3
HOH
HOH
28
A
HOH
31
3
HOH
HOH
31
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
47
3
HOH
HOH
47
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
27
3
HOH
HOH
27
B
HOH
29
3
HOH
HOH
29
B
HOH
30
3
HOH
HOH
30
B
HOH
32
3
HOH
HOH
32
B
HOH
33
3
HOH
HOH
33
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
41
3
HOH
HOH
41
B
HOH
42
3
HOH
HOH
42
B
HOH
43
3
HOH
HOH
43
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
46
3
HOH
HOH
46
B
HOH
48
3
HOH
HOH
48
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
54
3
HOH
HOH
54
B
HOH
55
3
HOH
HOH
55
B
MO6
21
3
HOH
HOH
58
B
MO6
21
3
HOH
HOH
59
B
MO6
21
3
HOH
HOH
60
B
MO6
21
3
HOH
HOH
61
B
MO6
21
3
HOH
HOH
62
B
MO6
21
3
HOH
HOH
63
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
I
6
n
6
DI
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
11
n
1
DC
11
B
C
12
n
2
DC
12
B
A
13
n
3
DA
13
B
A
14
n
4
DA
14
B
C
15
n
5
DC
15
B
I
16
n
6
DI
16
B
T
17
n
7
DT
17
B
T
18
n
8
DT
18
B
G
19
n
9
DG
19
B
G
20
n
10
DG
20
B
author_defined_assembly
2
dimeric
B
HOH
58
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
59
E
O
HOH
1_555
175.1
B
HOH
58
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
60
E
O
HOH
1_555
86.9
B
HOH
59
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
60
E
O
HOH
1_555
89.0
B
HOH
58
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
61
E
O
HOH
1_555
87.3
B
HOH
59
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
61
E
O
HOH
1_555
96.8
B
HOH
60
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
61
E
O
HOH
1_555
174.2
B
HOH
58
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
62
E
O
HOH
1_555
85.6
B
HOH
59
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
62
E
O
HOH
1_555
91.8
B
HOH
60
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
62
E
O
HOH
1_555
91.4
B
HOH
61
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
62
E
O
HOH
1_555
88.3
B
HOH
58
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
90.9
B
HOH
59
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
91.9
B
HOH
60
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
91.6
B
HOH
61
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
88.3
B
HOH
62
E
O
HOH
1_555
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
175.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-3.81
0.40
104.50
100.69
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
7.68
0.30
108.30
115.98
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
17.09
1.20
119.70
136.79
A
A
A
C3'
O3'
P
DC
DC
DC
1
1
2
Y
1
-12.78
1.60
120.90
108.12
A
A
A
P
O5'
C5'
DC
DC
DC
2
2
2
N
1
4.69
0.30
108.30
112.99
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
35.07
1.20
119.70
154.77
A
A
A
C3'
O3'
P
DC
DC
DA
2
2
3
Y
1
17.04
1.60
120.90
137.94
A
A
A
P
O5'
C5'
DA
DA
DA
3
3
3
N
1
7.79
0.30
108.30
116.09
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
-5.75
0.50
129.30
123.55
A
A
A
N1
C2
N3
DA
DA
DA
3
3
3
N
1
3.12
0.50
110.60
113.72
A
A
A
C2
N3
C4
DA
DA
DA
3
3
3
N
1
-3.60
0.60
118.60
115.00
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
1
5.30
0.80
123.70
129.00
A
A
A
C5
C6
N6
DA
DA
DA
3
3
3
N
1
4.48
0.30
108.30
112.78
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
-4.51
0.50
129.30
124.79
A
A
A
N1
C2
N3
DA
DA
DA
4
4
4
N
1
12.87
1.20
119.70
132.57
A
A
A
C3'
O3'
P
DA
DA
DC
4
4
5
Y
1
-6.82
1.00
110.10
103.28
A
A
A
C1'
O4'
C4'
DC
DC
DC
5
5
5
N
1
11.27
1.40
114.30
125.57
A
A
A
N1
C1'
C2'
DC
DC
DC
5
5
5
N
1
7.07
1.10
110.50
117.57
A
A
A
O3'
P
OP1
DC
DI
DI
5
6
6
Y
1
19.13
1.20
119.70
138.83
A
A
A
C3'
O3'
P
DI
DI
DT
6
6
7
Y
1
-6.89
0.80
109.40
102.51
A
A
A
O5'
C5'
C4'
DT
DT
DT
7
7
7
N
1
5.16
0.60
114.60
119.76
A
A
A
N1
C2
N3
DT
DT
DT
7
7
7
N
1
-6.18
0.60
127.20
121.02
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
4.12
0.60
115.20
119.32
A
A
A
N3
C4
C5
DT
DT
DT
7
7
7
N
1
-7.04
0.60
122.30
115.26
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
1
-4.50
0.60
119.90
115.40
A
A
A
N3
C4
O4
DT
DT
DT
7
7
7
N
1
10.94
1.20
119.70
130.64
A
A
A
C3'
O3'
P
DT
DT
DT
7
7
8
Y
1
-13.69
1.50
119.60
105.91
A
A
A
OP1
P
OP2
DT
DT
DT
8
8
8
N
1
11.99
1.20
110.70
122.69
A
A
A
O5'
P
OP1
DT
DT
DT
8
8
8
N
1
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
4.15
0.60
114.60
118.75
A
A
A
N1
C2
N3
DT
DT
DT
8
8
8
N
1
-6.63
0.60
127.20
120.57
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
5.10
0.60
115.20
120.30
A
A
A
N3
C4
C5
DT
DT
DT
8
8
8
N
1
-4.28
0.60
122.90
118.62
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
-8.79
0.80
109.40
100.61
A
A
A
O5'
C5'
C4'
DG
DG
DG
9
9
9
N
1
4.82
0.30
108.30
113.12
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-3.76
0.60
125.10
121.34
A
A
A
C6
N1
C2
DG
DG
DG
9
9
9
N
1
3.54
0.50
111.50
115.04
A
A
A
C5
C6
N1
DG
DG
DG
9
9
9
N
1
-4.43
0.60
119.90
115.47
A
A
A
N1
C6
O6
DG
DG
DG
9
9
9
N
1
23.13
1.20
119.70
142.83
A
A
A
C3'
O3'
P
DG
DG
DG
9
9
10
Y
1
-6.62
0.80
105.90
99.28
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
1
-6.21
0.70
108.00
101.79
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-4.83
0.70
119.90
115.07
A
A
A
N3
C2
N2
DG
DG
DG
10
10
10
N
1
4.11
0.60
119.90
124.01
A
A
A
N1
C6
O6
DG
DG
DG
10
10
10
N
1
-6.01
0.60
128.60
122.59
A
A
A
C5
C6
O6
DG
DG
DG
10
10
10
N
1
-3.09
0.40
121.90
118.81
B
B
B
N3
C4
C5
DC
DC
DC
11
11
11
N
1
4.60
0.60
118.90
123.50
B
B
B
N1
C2
O2
DC
DC
DC
11
11
11
N
1
13.65
1.20
119.70
133.35
B
B
B
C3'
O3'
P
DC
DC
DC
11
11
12
Y
1
8.68
1.10
110.50
119.18
B
B
B
O3'
P
OP2
DC
DC
DC
11
12
12
Y
1
-7.98
0.80
109.40
101.42
B
B
B
O5'
C5'
C4'
DC
DC
DC
12
12
12
N
1
4.01
0.60
118.90
122.91
B
B
B
N1
C2
O2
DC
DC
DC
12
12
12
N
1
8.39
1.20
110.70
119.09
B
B
B
O5'
P
OP2
DA
DA
DA
13
13
13
N
1
6.61
1.10
109.80
116.41
B
B
B
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
1
4.24
0.70
110.30
114.54
B
B
B
C1'
O4'
C4'
DA
DA
DA
13
13
13
N
1
6.40
0.30
108.30
114.70
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
-3.52
0.50
129.30
125.78
B
B
B
N1
C2
N3
DA
DA
DA
13
13
13
N
1
8.25
1.20
119.70
127.95
B
B
B
C3'
O3'
P
DA
DA
DA
13
13
14
Y
1
-7.08
0.80
109.40
102.32
B
B
B
O5'
C5'
C4'
DA
DA
DA
14
14
14
N
1
-4.57
0.50
129.30
124.73
B
B
B
N1
C2
N3
DA
DA
DA
14
14
14
N
1
3.24
0.50
110.60
113.84
B
B
B
C2
N3
C4
DA
DA
DA
14
14
14
N
1
3.45
0.50
119.90
123.35
B
B
B
C2
N3
C4
DC
DC
DC
15
15
15
N
1
3.69
0.60
118.90
122.59
B
B
B
N1
C2
O2
DC
DC
DC
15
15
15
N
1
26.36
1.20
119.70
146.06
B
B
B
C3'
O3'
P
DC
DC
DI
15
15
16
Y
1
8.08
1.20
119.70
127.78
B
B
B
C3'
O3'
P
DI
DI
DT
16
16
17
Y
1
11.23
1.20
110.70
121.93
B
B
B
O5'
P
OP2
DT
DT
DT
17
17
17
N
1
-6.10
0.80
109.40
103.30
B
B
B
O5'
C5'
C4'
DT
DT
DT
17
17
17
N
1
12.81
1.60
120.90
133.71
B
B
B
P
O5'
C5'
DT
DT
DT
17
17
17
N
1
-4.23
0.40
104.50
100.27
B
B
B
O4'
C4'
C3'
DT
DT
DT
17
17
17
N
1
-6.80
1.00
110.10
103.30
B
B
B
C1'
O4'
C4'
DT
DT
DT
17
17
17
N
1
-4.95
0.80
105.90
100.95
B
B
B
O4'
C1'
C2'
DT
DT
DT
17
17
17
N
1
-4.26
0.60
127.20
122.94
B
B
B
C2
N3
C4
DT
DT
DT
17
17
17
N
1
4.09
0.60
119.00
123.09
B
B
B
C4
C5
C7
DT
DT
DT
17
17
17
N
1
-5.33
0.60
122.90
117.57
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
1
16.33
1.20
119.70
136.03
B
B
B
C3'
O3'
P
DT
DT
DT
17
17
18
Y
1
-5.82
0.80
109.40
103.58
B
B
B
O5'
C5'
C4'
DT
DT
DT
18
18
18
N
1
23.52
1.60
120.90
144.42
B
B
B
P
O5'
C5'
DT
DT
DT
18
18
18
N
1
-4.84
0.80
105.90
101.06
B
B
B
O4'
C1'
C2'
DT
DT
DT
18
18
18
N
1
-9.28
0.70
108.00
98.72
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
1
-4.49
0.60
127.20
122.71
B
B
B
C2
N3
C4
DT
DT
DT
18
18
18
N
1
-5.47
0.80
123.10
117.63
B
B
B
N1
C2
O2
DT
DT
DT
18
18
18
N
1
4.14
0.60
119.00
123.14
B
B
B
C4
C5
C7
DT
DT
DT
18
18
18
N
1
-4.20
0.60
122.90
118.70
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
1
9.02
1.20
119.70
128.72
B
B
B
C3'
O3'
P
DT
DT
DG
18
18
19
Y
1
9.97
1.60
120.90
130.87
B
B
B
P
O5'
C5'
DG
DG
DG
19
19
19
N
1
21.25
1.20
119.70
140.95
B
B
B
C3'
O3'
P
DG
DG
DG
19
19
20
Y
1
-10.10
1.50
119.60
109.50
B
B
B
OP1
P
OP2
DG
DG
DG
20
20
20
N
1
25.14
1.60
120.90
146.04
B
B
B
P
O5'
C5'
DG
DG
DG
20
20
20
N
1
13.12
0.30
108.30
121.42
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
-3.85
0.60
125.10
121.25
B
B
B
C6
N1
C2
DG
DG
DG
20
20
20
N
1
3.19
0.50
111.50
114.69
B
B
B
C5
C6
N1
DG
DG
DG
20
20
20
N
1
A
A
N3
C4
DC
DC
1
1
0.045
0.007
1.335
1.380
N
1
B
B
O3'
P
DC
DI
15
16
-0.079
0.012
1.607
1.528
Y
0.1620000
2.200
8.000
1725
1
2.000
TR
isotropic
TR
isotropic
2.200
8.000
36
445
7
402
0
fix
fix
2.200
8.000
1D60
3202
1725
2.000
1
refinement
NUCLSQ
THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
metalc
2.063
B
MG
21
C
MG
MG
1_555
B
HOH
58
E
O
HOH
1_555
metalc
1.945
B
MG
21
C
MG
MG
1_555
B
HOH
59
E
O
HOH
1_555
metalc
1.985
B
MG
21
C
MG
MG
1_555
B
HOH
60
E
O
HOH
1_555
metalc
1.974
B
MG
21
C
MG
MG
1_555
B
HOH
61
E
O
HOH
1_555
metalc
2.037
B
MG
21
C
MG
MG
1_555
B
HOH
62
E
O
HOH
1_555
metalc
1.965
B
MG
21
C
MG
MG
1_555
B
HOH
63
E
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
18
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
18
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
17
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
17
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
14
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
14
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
13
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
13
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
11
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, MODIFIED, DNA
1D60
PDB
1
1D60
1
10
1D60
1
10
1D60
A
1
1
10
11
20
1D60
11
20
1D60
B
1
1
10
BINDING SITE FOR RESIDUE MG B 21
B
MG
21
Software
6
B
HOH
58
E
HOH
6
1_555
B
HOH
59
E
HOH
6
1_555
B
HOH
60
E
HOH
6
1_555
B
HOH
61
E
HOH
6
1_555
B
HOH
62
E
HOH
6
1_555
B
HOH
63
E
HOH
6
1_555
154
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