0.041034 0.000000 0.000000 0.000000 0.025000 0.000000 0.000000 0.000000 0.015135 0.00000 0.00000 0.00000 Edwards, K.J. Jenkins, T.C. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.370 40.000 66.070 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C19 H24 N4 O2 340.419 1,5-BIS(4-AMIDINOPHENOXY)PENTANE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H Y 147 N C Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C N 153 N C N 154 N C N 155 N C N 156 N C Y 157 N C Y 158 N C Y 159 N C Y 160 N C Y 161 N C Y 162 N C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N O N 168 N N N 169 N N N 170 N N N 171 N N N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing Y 152 N doub Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing Y 176 N doub Y 177 N sing N 178 N sing Y 179 N sing N 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing US Biochemistry BICHAW 0033 0006-2960 31 7104 7109 10.1021/bi00146a011 1643044 Crystal structure of a pentamidine-oligonucleotide complex: implications for DNA-binding properties. 1992 10.2210/pdb1d64/pdb pdb_00001d64 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 292.00 1 AREA DETECTOR XENTRONICS x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 340.419 1,5-BIS(4-AMIDINOPHENOXY)PENTANE 1 syn non-polymer 18.015 water 77 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.20 44.03 VAPOR DIFFUSION, SITTING DROP 7.00 pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 289.00K 289.00 WATER 1 MPD 1 MGCL2 1 NA CACODYLATE 1 WATER 2 MPD 2 11.361 1 19 A 1 B 24 -3.564 A_DC1:DG24_B 1 -15.897 0.322 -0.192 -0.225 -4.109 1 19 A 2 B 23 -1.474 A_DG2:DC23_B 2 -9.160 -0.159 0.092 -0.181 0.720 1 19 A 3 B 22 -1.090 A_DC3:DG22_B 3 -2.888 0.072 -0.053 -0.092 7.685 1 19 A 4 B 21 0.332 A_DG4:DC21_B 4 -12.913 -0.177 -0.137 -0.147 7.356 1 20 A 5 B 20 2.244 A_DA5:DT20_B 5 -16.360 0.145 -0.168 -0.166 -0.335 1 20 A 6 B 19 -1.274 A_DA6:DT19_B 6 -18.435 0.017 0.019 -0.074 1.713 1 20 A 7 B 18 2.173 A_DT7:DA18_B 7 -18.207 0.514 0.134 -0.203 0.097 1 20 A 8 B 17 -1.789 A_DT8:DA17_B 8 -19.318 0.372 -0.149 -0.170 -9.048 1 19 A 9 B 16 -0.127 A_DC9:DG16_B 9 -11.477 0.208 -0.277 -0.197 11.417 1 19 A 10 B 15 -0.125 A_DG10:DC15_B 10 -0.556 0.032 0.453 -0.104 2.827 1 19 A 11 B 14 -6.000 A_DC11:DG14_B 11 -31.284 -0.120 0.663 -0.278 10.723 1 19 A 12 B 13 -2.084 A_DG12:DC13_B 12 20.551 -0.177 -0.266 -0.130 3.725 34.240 A A 1 2 11.333 B B 24 23 3.728 6.628 -0.062 0.357 AA_DC1DG2:DC23DG24_BB 1 -2.254 3.854 33.538 -0.595 -0.304 3.200 41.778 A A 2 3 -7.083 B B 23 22 3.237 -5.033 0.775 0.625 AA_DG2DC3:DG22DC23_BB 2 3.956 -5.568 41.307 1.399 -0.676 3.392 31.511 A A 3 4 16.541 B B 22 21 3.321 8.833 -0.137 0.939 AA_DC3DG4:DC21DG22_BB 3 4.808 -9.002 29.902 -0.007 1.198 3.229 35.546 A A 4 5 11.464 B B 21 20 3.288 6.956 0.071 0.009 AA_DG4DA5:DT20DC21_BB 4 -0.209 0.345 34.880 -1.006 -0.146 3.446 36.764 A A 5 6 3.095 B B 20 19 3.480 1.950 0.020 -0.427 AA_DA5DA6:DT19DT20_BB 5 -2.185 3.468 36.651 -0.959 -0.347 3.233 33.228 A A 6 7 2.030 B B 19 18 3.249 1.161 0.309 -0.682 AA_DA6DT7:DA18DT19_BB 6 1.167 -2.042 33.188 -1.385 -0.347 3.128 37.206 A A 7 8 9.554 B B 18 17 3.198 6.068 -0.393 -0.043 AA_DT7DT8:DA17DA18_BB 7 1.912 -3.010 36.677 -0.853 0.864 3.502 35.375 A A 8 9 -4.743 B B 17 16 3.540 -2.879 -0.168 0.258 AA_DT8DC9:DG16DA17_BB 8 1.121 -1.848 35.244 0.882 0.454 2.953 33.245 A A 9 10 5.262 B B 16 15 3.065 2.975 0.400 1.103 AA_DC9DG10:DC15DG16_BB 9 -8.495 15.026 32.036 1.461 -2.032 3.464 41.900 A A 10 11 -20.296 B B 15 14 3.866 -14.247 -1.000 0.655 AA_DG10DC11:DG14DC15_BB 10 -1.107 1.577 39.491 2.636 1.265 3.298 38.689 A A 11 12 -12.089 B B 14 13 3.357 -7.926 1.096 0.597 AA_DC11DG12:DC13DG14_BB 11 5.994 -9.142 37.439 1.910 -0.892 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1993-01-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1992-03-02 REL REL PNT 1,5-BIS(4-AMIDINOPHENOXY)PENTANE HOH water PNT 25 2 PNT PNT 25 B HOH 27 3 HOH HOH 27 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 44 3 HOH HOH 44 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 55 3 HOH HOH 55 A HOH 57 3 HOH HOH 57 A HOH 59 3 HOH HOH 59 A HOH 61 3 HOH HOH 61 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 66 3 HOH HOH 66 A HOH 73 3 HOH HOH 73 A HOH 76 3 HOH HOH 76 A HOH 79 3 HOH HOH 79 A HOH 83 3 HOH HOH 83 A HOH 85 3 HOH HOH 85 A HOH 86 3 HOH HOH 86 A HOH 88 3 HOH HOH 88 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 96 3 HOH HOH 96 A HOH 97 3 HOH HOH 97 A HOH 98 3 HOH HOH 98 A HOH 100 3 HOH HOH 100 A HOH 102 3 HOH HOH 102 A HOH 26 3 HOH HOH 26 B HOH 28 3 HOH HOH 28 B HOH 32 3 HOH HOH 32 B HOH 33 3 HOH HOH 33 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 43 3 HOH HOH 43 B HOH 45 3 HOH HOH 45 B HOH 46 3 HOH HOH 46 B HOH 50 3 HOH HOH 50 B HOH 51 3 HOH HOH 51 B HOH 54 3 HOH HOH 54 B HOH 56 3 HOH HOH 56 B HOH 58 3 HOH HOH 58 B HOH 60 3 HOH HOH 60 B HOH 62 3 HOH HOH 62 B HOH 65 3 HOH HOH 65 B HOH 67 3 HOH HOH 67 B HOH 68 3 HOH HOH 68 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 71 3 HOH HOH 71 B HOH 72 3 HOH HOH 72 B HOH 74 3 HOH HOH 74 B HOH 75 3 HOH HOH 75 B HOH 77 3 HOH HOH 77 B HOH 78 3 HOH HOH 78 B HOH 80 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 82 3 HOH HOH 82 B HOH 84 3 HOH HOH 84 B HOH 87 3 HOH HOH 87 B HOH 89 3 HOH HOH 89 B HOH 90 3 HOH HOH 90 B HOH 91 3 HOH HOH 91 B HOH 95 3 HOH HOH 95 B HOH 99 3 HOH HOH 99 B HOH 101 3 HOH HOH 101 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O O HOH HOH 33 50 1.76 1 B B N7 O DG HOH 22 99 2.16 1 -9.49 0.80 109.40 99.91 A A A O5' C5' C4' DC DC DC 1 1 1 N 1 3.08 0.50 119.90 122.98 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -3.49 0.40 121.90 118.41 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 4.58 0.60 118.90 123.48 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 6.08 0.70 118.00 124.08 A A A N3 C4 N4 DC DC DC 1 1 1 N 1 21.56 1.20 119.70 141.26 A A A C3' O3' P DC DC DG 1 1 2 Y 1 -11.65 1.50 119.60 107.95 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 2.45 0.30 108.30 110.75 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 8.72 1.20 110.70 119.42 A A A O5' P OP2 DG DG DG 4 4 4 N 1 -3.85 0.60 125.10 121.25 A A A C6 N1 C2 DG DG DG 4 4 4 N 1 -5.52 0.80 109.40 103.88 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 7.95 0.60 118.60 126.55 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -6.87 0.50 129.30 122.43 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 -4.88 0.50 117.70 112.82 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 9.42 1.20 119.70 129.12 A A A C3' O3' P DA DA DA 5 5 6 Y 1 1.94 0.30 108.30 110.24 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 5.50 0.60 118.60 124.10 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 -4.96 0.50 129.30 124.34 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 -3.59 0.50 117.70 114.11 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 -3.68 0.60 127.20 123.52 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 -7.88 0.60 119.90 112.02 A A A N3 C4 O4 DT DT DT 7 7 7 N 1 4.49 0.70 124.90 129.39 A A A C5 C4 O4 DT DT DT 7 7 7 N 1 -3.73 0.60 122.90 119.17 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 19.72 1.20 119.70 139.42 A A A C3' O3' P DT DT DT 7 7 8 Y 1 -7.25 0.80 109.40 102.15 A A A O5' C5' C4' DT DT DT 8 8 8 N 1 -5.49 0.80 105.90 100.41 A A A O4' C1' C2' DT DT DT 8 8 8 N 1 3.95 0.60 114.60 118.55 A A A N1 C2 N3 DT DT DT 8 8 8 N 1 -5.30 0.60 127.20 121.90 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 4.15 0.60 115.20 119.35 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -4.71 0.60 119.90 115.19 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 15.12 1.20 110.70 125.82 A A A O5' P OP1 DC DC DC 9 9 9 N 1 3.05 0.30 108.30 111.35 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 4.24 0.60 118.90 123.14 A A A N1 C2 O2 DC DC DC 9 9 9 N 1 11.28 1.20 119.70 130.98 A A A C3' O3' P DC DC DG 9 9 10 Y 1 -8.40 0.80 102.40 94.00 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 -4.96 0.70 119.90 114.94 A A A N3 C2 N2 DG DG DG 10 10 10 N 1 3.90 0.30 108.30 112.20 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 7.23 1.20 119.70 126.93 A A A C3' O3' P DC DC DG 11 11 12 Y 1 9.89 1.60 120.90 130.79 A A A P O5' C5' DG DG DG 12 12 12 N 1 -5.66 0.80 109.40 103.74 B B B O5' C5' C4' DC DC DC 13 13 13 N 1 7.65 1.20 110.70 118.35 B B B O5' P OP1 DG DG DG 14 14 14 N 1 -5.22 0.80 109.40 104.18 B B B O5' C5' C4' DG DG DG 14 14 14 N 1 4.14 0.50 106.80 110.94 B B B O4' C1' C2' DG DG DG 14 14 14 N 1 9.58 1.20 119.70 129.28 B B B C3' O3' P DG DG DC 14 14 15 Y 1 -9.33 0.80 109.40 100.07 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 11.00 1.20 119.70 130.70 B B B C3' O3' P DC DC DG 15 15 16 Y 1 3.19 0.50 111.50 114.69 B B B C5 C6 N1 DG DG DG 16 16 16 N 1 -2.73 0.40 104.50 101.77 B B B O4' C4' C3' DA DA DA 17 17 17 N 1 -6.77 0.70 102.20 95.43 B B B C4' C3' C2' DA DA DA 17 17 17 N 1 -10.22 0.80 102.40 92.18 B B B C3' C2' C1' DA DA DA 17 17 17 N 1 11.68 0.30 108.30 119.98 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 3.76 0.60 118.60 122.36 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -3.34 0.50 129.30 125.96 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 3.67 0.60 118.60 122.27 B B B N1 C6 N6 DA DA DA 17 17 17 N 1 4.51 0.60 118.60 123.11 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -3.87 0.50 117.70 113.83 B B B C5 C6 N1 DA DA DA 18 18 18 N 1 -14.95 1.60 120.90 105.95 B B B P O5' C5' DT DT DT 19 19 19 N 1 -5.40 0.80 105.90 100.50 B B B O4' C1' C2' DT DT DT 19 19 19 N 1 4.18 0.30 108.30 112.48 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -5.08 0.60 127.20 122.12 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 3.68 0.60 115.20 118.88 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 18.01 1.20 119.70 137.71 B B B C3' O3' P DT DT DT 19 19 20 Y 1 -9.67 0.80 109.40 99.73 B B B O5' C5' C4' DT DT DT 20 20 20 N 1 -4.08 0.60 127.20 123.12 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 4.23 0.60 119.00 123.23 B B B C4 C5 C7 DT DT DT 20 20 20 N 1 -4.37 0.60 122.90 118.53 B B B C6 C5 C7 DT DT DT 20 20 20 N 1 23.67 1.20 119.70 143.37 B B B C3' O3' P DT DT DC 20 20 21 Y 1 -12.30 1.50 119.60 107.30 B B B OP1 P OP2 DC DC DC 21 21 21 N 1 8.47 1.20 110.70 119.17 B B B O5' P OP2 DC DC DC 21 21 21 N 1 -8.94 0.80 109.40 100.46 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 -5.21 0.70 108.00 102.79 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 -4.93 0.80 109.40 104.47 B B B O5' C5' C4' DG DG DG 22 22 22 N 1 -6.37 0.80 102.40 96.03 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 3.81 0.30 108.30 112.11 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -4.62 0.60 125.10 120.48 B B B C6 N1 C2 DG DG DG 22 22 22 N 1 3.62 0.60 123.90 127.52 B B B N1 C2 N3 DG DG DG 22 22 22 N 1 3.28 0.50 111.50 114.78 B B B C5 C6 N1 DG DG DG 22 22 22 N 1 8.22 1.20 119.70 127.92 B B B C3' O3' P DG DG DC 22 22 23 Y 1 -14.94 1.60 120.90 105.96 B B B P O5' C5' DC DC DC 23 23 23 N 1 4.30 0.60 106.00 110.30 B B B O4' C4' C3' DC DC DC 23 23 23 N 1 A A O3' P DC DG 1 2 -0.076 0.012 1.607 1.531 Y 1 A A P OP1 DG DG 2 2 0.104 0.017 1.485 1.589 N 1 A A O4' C4' DA DA 5 5 -0.068 0.010 1.446 1.378 N 1 A A C5 C7 DT DT 7 7 0.044 0.006 1.496 1.540 N 1 A A O4' C4' DT DT 8 8 -0.061 0.010 1.446 1.385 N 1 A A P O5' DG DG 10 10 0.074 0.010 1.593 1.667 N 1 B B C6 N1 DG DG 14 14 -0.050 0.007 1.391 1.341 N 1 A B O O HOH HOH 85 84 1.28 1_555 1_655 1 A B O O HOH HOH 27 32 1.28 1_555 4_465 1 B A OP2 O DT HOH 19 83 2.04 1_555 4_565 1 B A O4' O DC HOH 13 85 2.05 1_555 2_664 1 A B O O HOH HOH 93 32 2.19 1_555 4_465 0.1940000 2.100 7.000 3113 1 2.000 TR isotropic TR isotropic TR isotropic 2.100 7.000 77 588 25 486 0 0.017 0.030 0.032 0.041 fix fix fix 2.100 1D64 10630 3824 0.0699000 1 refinement NUCLSQ CRYSTAL STRUCTURE OF A PENTAMIDINE-OLIGONUCLEOTIDE COMPLEX: IMPLICATIONS FOR DNA-BINDING PROPERTIES 1 N N 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D64 PDB 1 1D64 1 12 1D64 1 12 1D64 A 1 1 12 13 24 1D64 13 24 1D64 B 1 1 12 BINDING SITE FOR RESIDUE PNT B 25 B PNT 25 Software 10 A DA 5 A DA 5 10 1_555 A DA 6 A DA 6 10 1_555 A DT 7 A DT 7 10 1_555 A DT 8 A DT 8 10 1_555 A DC 9 A DC 9 10 1_555 B DA 17 B DA 5 10 1_555 B DA 18 B DA 6 10 1_555 B DT 19 B DT 7 10 1_555 B DT 20 B DT 8 10 1_555 B DC 21 B DC 9 10 1_555 19 P 21 21 21