1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cheng, J.-W.
Chou, S.-H.
Salazar, M.
Reid, B.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
228
118
137
10.1016/0022-2836(92)90496-7
1447776
Solution structure of [d(GCGTATACGC)]2.
1992
10.2210/pdb1d68/pdb
pdb_00001d68
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3045.005
DNA (5'-D(P*GP*CP*GP*TP*AP*TP*AP*CP*GP*C)-3')
2
syn
polymer
DEOXYRIBONUCLEIC ACID
no
no
(DG)(DC)(DG)(DT)(DA)(DT)(DA)(DC)(DG)(DC)
GCGTATACGC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
13.839
1
19
A
1
B
20
-0.714
A_DG1:DC20_B
1
24.076
-0.181
0.303
-0.189
8.631
1
19
A
2
B
19
-1.026
A_DC2:DG19_B
2
-6.988
0.220
-0.309
-0.161
10.162
1
19
A
3
B
18
-1.276
A_DG3:DC18_B
3
-2.141
-0.237
0.331
-0.162
7.071
1
20
A
4
B
17
-2.223
A_DT4:DA17_B
4
-16.130
-0.010
-0.127
-0.066
0.298
1
20
A
5
B
16
-1.437
A_DA5:DT16_B
5
-11.212
-0.015
0.183
-0.097
-0.259
1
20
A
6
B
15
-1.427
A_DT6:DA15_B
6
-11.209
0.014
0.180
-0.097
-7.096
1
20
A
7
B
14
-2.181
A_DA7:DT14_B
7
-16.140
0.009
-0.128
-0.067
-10.171
1
19
A
8
B
13
-1.243
A_DC8:DG13_B
8
-2.169
0.239
0.333
-0.162
-8.667
1
19
A
9
B
12
-1.009
A_DG9:DC12_B
9
-7.025
-0.220
-0.309
-0.160
-13.875
1
19
A
10
B
11
-0.724
A_DC10:DG11_B
10
24.086
0.182
0.302
-0.188
3.025
34.566
A
A
1
2
16.624
B
B
20
19
3.503
9.739
-0.186
-1.149
AA_DG1DC2:DG19DC20_BB
1
3.016
-5.148
33.072
-3.470
0.788
2.744
38.627
A
A
2
3
16.752
B
B
19
18
2.989
10.916
-0.591
-0.656
AA_DC2DG3:DC18DG19_BB
2
-4.614
7.082
36.830
-2.201
0.382
2.954
38.160
A
A
3
4
8.561
B
B
18
17
3.044
5.576
-0.206
-0.316
AA_DG3DT4:DA17DC18_BB
3
2.150
-3.301
37.707
-1.133
0.566
2.779
47.765
A
A
4
5
15.836
B
B
17
16
2.874
12.680
-0.072
-0.010
AA_DT4DA5:DT16DA17_BB
4
-2.699
3.370
46.072
-0.904
-0.101
2.805
36.384
A
A
5
6
0.669
B
B
16
15
2.811
0.417
0.000
-0.507
AA_DA5DT6:DA15DT16_BB
5
-0.001
0.002
36.382
-0.862
0.000
2.780
47.766
A
A
6
7
15.893
B
B
15
14
2.876
12.725
0.072
-0.010
AA_DT6DA7:DT14DA15_BB
6
2.667
-3.330
46.063
-0.907
0.099
2.951
38.172
A
A
7
8
8.671
B
B
14
13
3.043
5.649
0.208
-0.316
AA_DA7DC8:DG13DT14_BB
7
-2.163
3.321
37.707
-1.141
-0.569
2.740
38.628
A
A
8
9
16.892
B
B
13
12
2.988
11.004
0.591
-0.657
AA_DC8DG9:DC12DG13_BB
8
4.643
-7.127
36.802
-2.212
-0.380
3.025
34.569
A
A
9
10
16.626
B
B
12
11
3.503
9.741
0.185
-1.149
AA_DG9DC10:DG11DC12_BB
9
-3.014
5.145
33.075
-3.471
-0.786
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1993-04-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1992-04-15
REL
CHEMICALLY SYNTHESIZED
sample
1
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
T
4
n
4
DT
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
C
10
n
10
DC
10
A
G
11
n
1
DG
11
B
C
12
n
2
DC
12
B
G
13
n
3
DG
13
B
T
14
n
4
DT
14
B
A
15
n
5
DA
15
B
T
16
n
6
DT
16
B
A
17
n
7
DA
17
B
C
18
n
8
DC
18
B
G
19
n
9
DG
19
B
C
20
n
10
DC
20
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
5
0.061
SIDE CHAIN
1
A
DG
9
0.059
SIDE CHAIN
1
B
DA
15
0.062
SIDE CHAIN
1
B
DG
19
0.059
SIDE CHAIN
1
-10.28
1.50
119.60
109.32
A
A
A
OP1
P
OP2
DG
DG
DG
1
1
1
N
1
12.05
1.20
119.70
131.75
A
A
A
C3'
O3'
P
DG
DG
DC
1
1
2
Y
1
9.08
1.20
119.70
128.78
A
A
A
C3'
O3'
P
DG
DG
DT
3
3
4
Y
1
3.66
0.60
114.60
118.26
A
A
A
N1
C2
N3
DT
DT
DT
4
4
4
N
1
-4.53
0.60
127.20
122.67
A
A
A
C2
N3
C4
DT
DT
DT
4
4
4
N
1
-3.86
0.60
123.70
119.84
A
A
A
C5
C6
N1
DT
DT
DT
4
4
4
N
1
7.42
1.20
119.70
127.12
A
A
A
C3'
O3'
P
DT
DT
DA
4
4
5
Y
1
-6.24
0.70
108.00
101.76
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
12.51
1.20
119.70
132.21
A
A
A
C3'
O3'
P
DA
DA
DT
5
5
6
Y
1
3.70
0.60
114.60
118.30
A
A
A
N1
C2
N3
DT
DT
DT
6
6
6
N
1
-4.35
0.60
127.20
122.84
A
A
A
C2
N3
C4
DT
DT
DT
6
6
6
N
1
-3.75
0.60
123.70
119.95
A
A
A
C5
C6
N1
DT
DT
DT
6
6
6
N
1
9.88
1.20
119.70
129.58
A
A
A
C3'
O3'
P
DT
DT
DA
6
6
7
Y
1
12.82
1.20
119.70
132.52
A
A
A
C3'
O3'
P
DA
DA
DC
7
7
8
Y
1
7.48
1.20
119.70
127.18
A
A
A
C3'
O3'
P
DC
DC
DG
8
8
9
Y
1
-10.25
1.50
119.60
109.35
B
B
B
OP1
P
OP2
DG
DG
DG
11
11
11
N
1
12.06
1.20
119.70
131.76
B
B
B
C3'
O3'
P
DG
DG
DC
11
11
12
Y
1
9.03
1.20
119.70
128.73
B
B
B
C3'
O3'
P
DG
DG
DT
13
13
14
Y
1
3.72
0.60
114.60
118.32
B
B
B
N1
C2
N3
DT
DT
DT
14
14
14
N
1
-4.56
0.60
127.20
122.64
B
B
B
C2
N3
C4
DT
DT
DT
14
14
14
N
1
-3.88
0.60
123.70
119.82
B
B
B
C5
C6
N1
DT
DT
DT
14
14
14
N
1
7.38
1.20
119.70
127.08
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
1
-6.13
0.70
108.00
101.87
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
12.47
1.20
119.70
132.17
B
B
B
C3'
O3'
P
DA
DA
DT
15
15
16
Y
1
3.76
0.60
114.60
118.36
B
B
B
N1
C2
N3
DT
DT
DT
16
16
16
N
1
-4.38
0.60
127.20
122.82
B
B
B
C2
N3
C4
DT
DT
DT
16
16
16
N
1
-3.74
0.60
123.70
119.96
B
B
B
C5
C6
N1
DT
DT
DT
16
16
16
N
1
9.87
1.20
119.70
129.57
B
B
B
C3'
O3'
P
DT
DT
DA
16
16
17
Y
1
12.80
1.20
119.70
132.50
B
B
B
C3'
O3'
P
DA
DA
DC
17
17
18
Y
1
7.42
1.20
119.70
127.12
B
B
B
C3'
O3'
P
DC
DC
DG
18
18
19
Y
1
A
A
P
OP2
DG
DG
1
1
0.115
0.017
1.485
1.600
N
1
A
A
P
OP3
DG
DG
1
1
-0.127
0.012
1.607
1.480
N
1
A
A
O3'
C3'
DG
DG
1
1
-0.039
0.006
1.419
1.380
N
1
A
A
C5
C6
DT
DT
4
4
0.055
0.007
1.339
1.394
N
1
A
A
C5
C6
DT
DT
6
6
0.053
0.007
1.339
1.392
N
1
A
A
O3'
C3'
DA
DA
7
7
-0.043
0.006
1.419
1.376
N
1
B
B
P
OP2
DG
DG
11
11
0.115
0.017
1.485
1.600
N
1
B
B
P
OP3
DG
DG
11
11
-0.126
0.012
1.607
1.481
N
1
B
B
O3'
C3'
DG
DG
11
11
-0.036
0.006
1.419
1.383
N
1
B
B
C5
C6
DT
DT
14
14
0.055
0.007
1.339
1.394
N
1
B
B
O3'
C3'
DA
DA
15
15
-0.036
0.006
1.419
1.383
N
1
B
B
C5
C6
DT
DT
16
16
0.054
0.007
1.339
1.393
N
1
B
B
O3'
C3'
DA
DA
17
17
-0.043
0.006
1.419
1.376
N
SOLUTION STRUCTURE OF [D(GCGTATACGC)]2
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
20
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
20
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
20
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
18
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
18
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
18
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
17
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
17
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
16
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
16
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
15
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
15
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
14
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
14
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
11
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
11
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
11
B
N2
DG
1
1_555
DNA
DNA, DOUBLE HELIX
1D68
PDB
1
1D68
1
10
1D68
1
10
1D68
A
1
1
10
11
20
1D68
11
20
1D68
B
1
1
10
1
P 1