1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Cheng, J.-W. Chou, S.-H. Salazar, M. Reid, B.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 228 118 137 10.1016/0022-2836(92)90496-7 1447776 Solution structure of [d(GCGTATACGC)]2. 1992 10.2210/pdb1d68/pdb pdb_00001d68 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3045.005 DNA (5'-D(P*GP*CP*GP*TP*AP*TP*AP*CP*GP*C)-3') 2 syn polymer DEOXYRIBONUCLEIC ACID no no (DG)(DC)(DG)(DT)(DA)(DT)(DA)(DC)(DG)(DC) GCGTATACGC A,B polydeoxyribonucleotide n n n n n n n n n n 13.839 1 19 A 1 B 20 -0.714 A_DG1:DC20_B 1 24.076 -0.181 0.303 -0.189 8.631 1 19 A 2 B 19 -1.026 A_DC2:DG19_B 2 -6.988 0.220 -0.309 -0.161 10.162 1 19 A 3 B 18 -1.276 A_DG3:DC18_B 3 -2.141 -0.237 0.331 -0.162 7.071 1 20 A 4 B 17 -2.223 A_DT4:DA17_B 4 -16.130 -0.010 -0.127 -0.066 0.298 1 20 A 5 B 16 -1.437 A_DA5:DT16_B 5 -11.212 -0.015 0.183 -0.097 -0.259 1 20 A 6 B 15 -1.427 A_DT6:DA15_B 6 -11.209 0.014 0.180 -0.097 -7.096 1 20 A 7 B 14 -2.181 A_DA7:DT14_B 7 -16.140 0.009 -0.128 -0.067 -10.171 1 19 A 8 B 13 -1.243 A_DC8:DG13_B 8 -2.169 0.239 0.333 -0.162 -8.667 1 19 A 9 B 12 -1.009 A_DG9:DC12_B 9 -7.025 -0.220 -0.309 -0.160 -13.875 1 19 A 10 B 11 -0.724 A_DC10:DG11_B 10 24.086 0.182 0.302 -0.188 3.025 34.566 A A 1 2 16.624 B B 20 19 3.503 9.739 -0.186 -1.149 AA_DG1DC2:DG19DC20_BB 1 3.016 -5.148 33.072 -3.470 0.788 2.744 38.627 A A 2 3 16.752 B B 19 18 2.989 10.916 -0.591 -0.656 AA_DC2DG3:DC18DG19_BB 2 -4.614 7.082 36.830 -2.201 0.382 2.954 38.160 A A 3 4 8.561 B B 18 17 3.044 5.576 -0.206 -0.316 AA_DG3DT4:DA17DC18_BB 3 2.150 -3.301 37.707 -1.133 0.566 2.779 47.765 A A 4 5 15.836 B B 17 16 2.874 12.680 -0.072 -0.010 AA_DT4DA5:DT16DA17_BB 4 -2.699 3.370 46.072 -0.904 -0.101 2.805 36.384 A A 5 6 0.669 B B 16 15 2.811 0.417 0.000 -0.507 AA_DA5DT6:DA15DT16_BB 5 -0.001 0.002 36.382 -0.862 0.000 2.780 47.766 A A 6 7 15.893 B B 15 14 2.876 12.725 0.072 -0.010 AA_DT6DA7:DT14DA15_BB 6 2.667 -3.330 46.063 -0.907 0.099 2.951 38.172 A A 7 8 8.671 B B 14 13 3.043 5.649 0.208 -0.316 AA_DA7DC8:DG13DT14_BB 7 -2.163 3.321 37.707 -1.141 -0.569 2.740 38.628 A A 8 9 16.892 B B 13 12 2.988 11.004 0.591 -0.657 AA_DC8DG9:DC12DG13_BB 8 4.643 -7.127 36.802 -2.212 -0.380 3.025 34.569 A A 9 10 16.626 B B 12 11 3.503 9.741 0.185 -1.149 AA_DG9DC10:DG11DC12_BB 9 -3.014 5.145 33.075 -3.471 -0.786 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1993-04-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1992-04-15 REL CHEMICALLY SYNTHESIZED sample 1 G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 DG 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B T 14 n 4 DT 14 B A 15 n 5 DA 15 B T 16 n 6 DT 16 B A 17 n 7 DA 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 5 0.061 SIDE CHAIN 1 A DG 9 0.059 SIDE CHAIN 1 B DA 15 0.062 SIDE CHAIN 1 B DG 19 0.059 SIDE CHAIN 1 -10.28 1.50 119.60 109.32 A A A OP1 P OP2 DG DG DG 1 1 1 N 1 12.05 1.20 119.70 131.75 A A A C3' O3' P DG DG DC 1 1 2 Y 1 9.08 1.20 119.70 128.78 A A A C3' O3' P DG DG DT 3 3 4 Y 1 3.66 0.60 114.60 118.26 A A A N1 C2 N3 DT DT DT 4 4 4 N 1 -4.53 0.60 127.20 122.67 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 -3.86 0.60 123.70 119.84 A A A C5 C6 N1 DT DT DT 4 4 4 N 1 7.42 1.20 119.70 127.12 A A A C3' O3' P DT DT DA 4 4 5 Y 1 -6.24 0.70 108.00 101.76 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 12.51 1.20 119.70 132.21 A A A C3' O3' P DA DA DT 5 5 6 Y 1 3.70 0.60 114.60 118.30 A A A N1 C2 N3 DT DT DT 6 6 6 N 1 -4.35 0.60 127.20 122.84 A A A C2 N3 C4 DT DT DT 6 6 6 N 1 -3.75 0.60 123.70 119.95 A A A C5 C6 N1 DT DT DT 6 6 6 N 1 9.88 1.20 119.70 129.58 A A A C3' O3' P DT DT DA 6 6 7 Y 1 12.82 1.20 119.70 132.52 A A A C3' O3' P DA DA DC 7 7 8 Y 1 7.48 1.20 119.70 127.18 A A A C3' O3' P DC DC DG 8 8 9 Y 1 -10.25 1.50 119.60 109.35 B B B OP1 P OP2 DG DG DG 11 11 11 N 1 12.06 1.20 119.70 131.76 B B B C3' O3' P DG DG DC 11 11 12 Y 1 9.03 1.20 119.70 128.73 B B B C3' O3' P DG DG DT 13 13 14 Y 1 3.72 0.60 114.60 118.32 B B B N1 C2 N3 DT DT DT 14 14 14 N 1 -4.56 0.60 127.20 122.64 B B B C2 N3 C4 DT DT DT 14 14 14 N 1 -3.88 0.60 123.70 119.82 B B B C5 C6 N1 DT DT DT 14 14 14 N 1 7.38 1.20 119.70 127.08 B B B C3' O3' P DT DT DA 14 14 15 Y 1 -6.13 0.70 108.00 101.87 B B B O4' C1' N9 DA DA DA 15 15 15 N 1 12.47 1.20 119.70 132.17 B B B C3' O3' P DA DA DT 15 15 16 Y 1 3.76 0.60 114.60 118.36 B B B N1 C2 N3 DT DT DT 16 16 16 N 1 -4.38 0.60 127.20 122.82 B B B C2 N3 C4 DT DT DT 16 16 16 N 1 -3.74 0.60 123.70 119.96 B B B C5 C6 N1 DT DT DT 16 16 16 N 1 9.87 1.20 119.70 129.57 B B B C3' O3' P DT DT DA 16 16 17 Y 1 12.80 1.20 119.70 132.50 B B B C3' O3' P DA DA DC 17 17 18 Y 1 7.42 1.20 119.70 127.12 B B B C3' O3' P DC DC DG 18 18 19 Y 1 A A P OP2 DG DG 1 1 0.115 0.017 1.485 1.600 N 1 A A P OP3 DG DG 1 1 -0.127 0.012 1.607 1.480 N 1 A A O3' C3' DG DG 1 1 -0.039 0.006 1.419 1.380 N 1 A A C5 C6 DT DT 4 4 0.055 0.007 1.339 1.394 N 1 A A C5 C6 DT DT 6 6 0.053 0.007 1.339 1.392 N 1 A A O3' C3' DA DA 7 7 -0.043 0.006 1.419 1.376 N 1 B B P OP2 DG DG 11 11 0.115 0.017 1.485 1.600 N 1 B B P OP3 DG DG 11 11 -0.126 0.012 1.607 1.481 N 1 B B O3' C3' DG DG 11 11 -0.036 0.006 1.419 1.383 N 1 B B C5 C6 DT DT 14 14 0.055 0.007 1.339 1.394 N 1 B B O3' C3' DA DA 15 15 -0.036 0.006 1.419 1.383 N 1 B B C5 C6 DT DT 16 16 0.054 0.007 1.339 1.393 N 1 B B O3' C3' DA DA 17 17 -0.043 0.006 1.419 1.376 N SOLUTION STRUCTURE OF [D(GCGTATACGC)]2 1 N N 1 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 DNA DNA, DOUBLE HELIX 1D68 PDB 1 1D68 1 10 1D68 1 10 1D68 A 1 1 10 11 20 1D68 11 20 1D68 B 1 1 10 1 P 1