0.004237
0.002446
0.000000
0.000000
0.004893
0.000000
0.000000
0.000000
0.009259
0.00000
0.00000
0.00000
Mondragon, A.
DiGate, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
236.000
236.000
108.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Structure Fold.Des.
FODEFH
1263
0969-2126
7
1373
1383
10.1016/S0969-2126(00)80027-1
10574789
The structure of Escherichia coli DNA topoisomerase III.
1999
10.2210/pdb1d6m/pdb
pdb_00001d6m
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1995-03-15
PRINCETON 2K
SINGLE WAVELENGTH
M
x-ray
1
0.92
1.0
A1
CHESS
0.92
SYNCHROTRON
CHESS BEAMLINE A1
73322.781
DNA TOPOISOMERASE III
5.99.1.2
1
man
polymer
no
no
MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPS
VTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW
QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLY
ETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEA
KVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV
VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHS
LPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKK
SPPADEVGSGAIA
MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPS
VTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW
QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLY
ETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEA
KVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV
VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHS
LPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKK
SPPADEVGSGAIA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
HMS-83
PET3
3
5.92
79.22
MICRODIALYSIS
6.3
1.65M Na, potassium phosphate, pH 6.3, MICRODIALYSIS, temperature 287K
287
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2000-10-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
1999-10-14
REL
MET
1
n
1
MET
1
A
ARG
2
n
2
ARG
2
A
LEU
3
n
3
LEU
3
A
PHE
4
n
4
PHE
4
A
ILE
5
n
5
ILE
5
A
ALA
6
n
6
ALA
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
PRO
9
n
9
PRO
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
ALA
12
n
12
ALA
12
A
ARG
13
n
13
ARG
13
A
ALA
14
n
14
ALA
14
A
ILE
15
n
15
ILE
15
A
ALA
16
n
16
ALA
16
A
ASP
17
n
17
ASP
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
PRO
20
n
20
PRO
20
A
LYS
21
n
21
LYS
21
A
PRO
22
n
22
PRO
22
A
HIS
23
n
23
HIS
23
A
ARG
24
n
24
ARG
24
A
LYS
25
n
25
LYS
25
A
GLY
26
n
26
GLY
26
A
ASP
27
n
27
ASP
27
A
GLY
28
n
28
GLY
28
A
PHE
29
n
29
PHE
29
A
ILE
30
n
30
ILE
30
A
GLU
31
n
31
GLU
31
A
CYS
32
n
32
CYS
32
A
GLY
33
n
33
GLY
33
A
ASN
34
n
34
ASN
34
A
GLY
35
n
35
GLY
35
A
GLN
36
n
36
GLN
36
A
VAL
37
n
37
VAL
37
A
VAL
38
n
38
VAL
38
A
THR
39
n
39
THR
39
A
TRP
40
n
40
TRP
40
A
CYS
41
n
41
CYS
41
A
ILE
42
n
42
ILE
42
A
GLY
43
n
43
GLY
43
A
HIS
44
n
44
HIS
44
A
LEU
45
n
45
LEU
45
A
LEU
46
n
46
LEU
46
A
GLU
47
n
47
GLU
47
A
GLN
48
n
48
GLN
48
A
ALA
49
n
49
ALA
49
A
GLN
50
n
50
GLN
50
A
PRO
51
n
51
PRO
51
A
ASP
52
n
52
ASP
52
A
ALA
53
n
53
ALA
53
A
TYR
54
n
54
TYR
54
A
ASP
55
n
55
ASP
55
A
SER
56
n
56
SER
56
A
ARG
57
n
57
ARG
57
A
TYR
58
n
58
TYR
58
A
ALA
59
n
59
ALA
59
A
ARG
60
n
60
ARG
60
A
TRP
61
n
61
TRP
61
A
ASN
62
n
62
ASN
62
A
LEU
63
n
63
LEU
63
A
ALA
64
n
64
ALA
64
A
ASP
65
n
65
ASP
65
A
LEU
66
n
66
LEU
66
A
PRO
67
n
67
PRO
67
A
ILE
68
n
68
ILE
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
TRP
73
n
73
TRP
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
GLN
76
n
76
GLN
76
A
PRO
77
n
77
PRO
77
A
ARG
78
n
78
ARG
78
A
PRO
79
n
79
PRO
79
A
SER
80
n
80
SER
80
A
VAL
81
n
81
VAL
81
A
THR
82
n
82
THR
82
A
LYS
83
n
83
LYS
83
A
GLN
84
n
84
GLN
84
A
LEU
85
n
85
LEU
85
A
ASN
86
n
86
ASN
86
A
VAL
87
n
87
VAL
87
A
ILE
88
n
88
ILE
88
A
LYS
89
n
89
LYS
89
A
ARG
90
n
90
ARG
90
A
PHE
91
n
91
PHE
91
A
LEU
92
n
92
LEU
92
A
HIS
93
n
93
HIS
93
A
GLU
94
n
94
GLU
94
A
ALA
95
n
95
ALA
95
A
SER
96
n
96
SER
96
A
GLU
97
n
97
GLU
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
HIS
100
n
100
HIS
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
ASP
103
n
103
ASP
103
A
PRO
104
n
104
PRO
104
A
ASP
105
n
105
ASP
105
A
ARG
106
n
106
ARG
106
A
GLU
107
n
107
GLU
107
A
GLY
108
n
108
GLY
108
A
GLN
109
n
109
GLN
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
ASP
113
n
113
ASP
113
A
GLU
114
n
114
GLU
114
A
VAL
115
n
115
VAL
115
A
LEU
116
n
116
LEU
116
A
ASP
117
n
117
ASP
117
A
TYR
118
n
118
TYR
118
A
LEU
119
n
119
LEU
119
A
GLN
120
n
120
GLN
120
A
LEU
121
n
121
LEU
121
A
ALA
122
n
122
ALA
122
A
PRO
123
n
123
PRO
123
A
GLU
124
n
124
GLU
124
A
LYS
125
n
125
LYS
125
A
ARG
126
n
126
ARG
126
A
GLN
127
n
127
GLN
127
A
GLN
128
n
128
GLN
128
A
VAL
129
n
129
VAL
129
A
GLN
130
n
130
GLN
130
A
ARG
131
n
131
ARG
131
A
CYS
132
n
132
CYS
132
A
LEU
133
n
133
LEU
133
A
ILE
134
n
134
ILE
134
A
ASN
135
n
135
ASN
135
A
ASP
136
n
136
ASP
136
A
LEU
137
n
137
LEU
137
A
ASN
138
n
138
ASN
138
A
PRO
139
n
139
PRO
139
A
GLN
140
n
140
GLN
140
A
ALA
141
n
141
ALA
141
A
VAL
142
n
142
VAL
142
A
GLU
143
n
143
GLU
143
A
ARG
144
n
144
ARG
144
A
ALA
145
n
145
ALA
145
A
ILE
146
n
146
ILE
146
A
ASP
147
n
147
ASP
147
A
ARG
148
n
148
ARG
148
A
LEU
149
n
149
LEU
149
A
ARG
150
n
150
ARG
150
A
SER
151
n
151
SER
151
A
ASN
152
n
152
ASN
152
A
SER
153
n
153
SER
153
A
GLU
154
n
154
GLU
154
A
PHE
155
n
155
PHE
155
A
VAL
156
n
156
VAL
156
A
PRO
157
n
157
PRO
157
A
LEU
158
n
158
LEU
158
A
CYS
159
n
159
CYS
159
A
VAL
160
n
160
VAL
160
A
SER
161
n
161
SER
161
A
ALA
162
n
162
ALA
162
A
LEU
163
n
163
LEU
163
A
ALA
164
n
164
ALA
164
A
ARG
165
n
165
ARG
165
A
ALA
166
n
166
ALA
166
A
ARG
167
n
167
ARG
167
A
ALA
168
n
168
ALA
168
A
ASP
169
n
169
ASP
169
A
TRP
170
n
170
TRP
170
A
LEU
171
n
171
LEU
171
A
TYR
172
n
172
TYR
172
A
GLY
173
n
173
GLY
173
A
ILE
174
n
174
ILE
174
A
ASN
175
n
175
ASN
175
A
MET
176
n
176
MET
176
A
THR
177
n
177
THR
177
A
ARG
178
n
178
ARG
178
A
ALA
179
n
179
ALA
179
A
TYR
180
n
180
TYR
180
A
THR
181
n
181
THR
181
A
ILE
182
n
182
ILE
182
A
LEU
183
n
183
LEU
183
A
GLY
184
n
184
GLY
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
GLY
191
n
191
GLY
191
A
VAL
192
n
192
VAL
192
A
LEU
193
n
193
LEU
193
A
SER
194
n
194
SER
194
A
VAL
195
n
195
VAL
195
A
GLY
196
n
196
GLY
196
A
ARG
197
n
197
ARG
197
A
VAL
198
n
198
VAL
198
A
GLN
199
n
199
GLN
199
A
THR
200
n
200
THR
200
A
PRO
201
n
201
PRO
201
A
VAL
202
n
202
VAL
202
A
LEU
203
n
203
LEU
203
A
GLY
204
n
204
GLY
204
A
LEU
205
n
205
LEU
205
A
VAL
206
n
206
VAL
206
A
VAL
207
n
207
VAL
207
A
ARG
208
n
208
ARG
208
A
ARG
209
n
209
ARG
209
A
ASP
210
n
210
ASP
210
A
GLU
211
n
211
GLU
211
A
GLU
212
n
212
GLU
212
A
ILE
213
n
213
ILE
213
A
GLU
214
n
214
GLU
214
A
ASN
215
n
215
ASN
215
A
PHE
216
n
216
PHE
216
A
VAL
217
n
217
VAL
217
A
ALA
218
n
218
ALA
218
A
LYS
219
n
219
LYS
219
A
ASP
220
n
220
ASP
220
A
PHE
221
n
221
PHE
221
A
PHE
222
n
222
PHE
222
A
GLU
223
n
223
GLU
223
A
VAL
224
n
224
VAL
224
A
LYS
225
n
225
LYS
225
A
ALA
226
n
226
ALA
226
A
HIS
227
n
227
HIS
227
A
ILE
228
n
228
ILE
228
A
VAL
229
n
229
VAL
229
A
THR
230
n
230
THR
230
A
PRO
231
n
231
PRO
231
A
ALA
232
n
232
ALA
232
A
ASP
233
n
233
ASP
233
A
GLU
234
n
234
GLU
234
A
ARG
235
n
235
ARG
235
A
PHE
236
n
236
PHE
236
A
THR
237
n
237
THR
237
A
ALA
238
n
238
ALA
238
A
ILE
239
n
239
ILE
239
A
TRP
240
n
240
TRP
240
A
GLN
241
n
241
GLN
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
GLU
244
n
244
GLU
244
A
ALA
245
n
245
ALA
245
A
CYS
246
n
246
CYS
246
A
GLU
247
n
247
GLU
247
A
PRO
248
n
248
PRO
248
A
TYR
249
n
249
TYR
249
A
GLN
250
n
250
GLN
250
A
ASP
251
n
251
ASP
251
A
GLU
252
n
252
GLU
252
A
GLU
253
n
253
GLU
253
A
GLY
254
n
254
GLY
254
A
ARG
255
n
255
ARG
255
A
LEU
256
n
256
LEU
256
A
LEU
257
n
257
LEU
257
A
HIS
258
n
258
HIS
258
A
ARG
259
n
259
ARG
259
A
PRO
260
n
260
PRO
260
A
LEU
261
n
261
LEU
261
A
ALA
262
n
262
ALA
262
A
GLU
263
n
263
GLU
263
A
HIS
264
n
264
HIS
264
A
VAL
265
n
265
VAL
265
A
VAL
266
n
266
VAL
266
A
ASN
267
n
267
ASN
267
A
ARG
268
n
268
ARG
268
A
ILE
269
n
269
ILE
269
A
SER
270
n
270
SER
270
A
GLY
271
n
271
GLY
271
A
GLN
272
n
272
GLN
272
A
PRO
273
n
273
PRO
273
A
ALA
274
n
274
ALA
274
A
ILE
275
n
275
ILE
275
A
VAL
276
n
276
VAL
276
A
THR
277
n
277
THR
277
A
SER
278
n
278
SER
278
A
TYR
279
n
279
TYR
279
A
ASN
280
n
280
ASN
280
A
ASP
281
n
281
ASP
281
A
LYS
282
n
282
LYS
282
A
ARG
283
n
283
ARG
283
A
GLU
284
n
284
GLU
284
A
SER
285
n
285
SER
285
A
GLU
286
n
286
GLU
286
A
SER
287
n
287
SER
287
A
ALA
288
n
288
ALA
288
A
PRO
289
n
289
PRO
289
A
LEU
290
n
290
LEU
290
A
PRO
291
n
291
PRO
291
A
PHE
292
n
292
PHE
292
A
SER
293
n
293
SER
293
A
LEU
294
n
294
LEU
294
A
SER
295
n
295
SER
295
A
ALA
296
n
296
ALA
296
A
LEU
297
n
297
LEU
297
A
GLN
298
n
298
GLN
298
A
ILE
299
n
299
ILE
299
A
GLU
300
n
300
GLU
300
A
ALA
301
n
301
ALA
301
A
ALA
302
n
302
ALA
302
A
LYS
303
n
303
LYS
303
A
ARG
304
n
304
ARG
304
A
PHE
305
n
305
PHE
305
A
GLY
306
n
306
GLY
306
A
LEU
307
n
307
LEU
307
A
SER
308
n
308
SER
308
A
ALA
309
n
309
ALA
309
A
GLN
310
n
310
GLN
310
A
ASN
311
n
311
ASN
311
A
VAL
312
n
312
VAL
312
A
LEU
313
n
313
LEU
313
A
ASP
314
n
314
ASP
314
A
ILE
315
n
315
ILE
315
A
CYS
316
n
316
CYS
316
A
GLN
317
n
317
GLN
317
A
LYS
318
n
318
LYS
318
A
LEU
319
n
319
LEU
319
A
TYR
320
n
320
TYR
320
A
GLU
321
n
321
GLU
321
A
THR
322
n
322
THR
322
A
HIS
323
n
323
HIS
323
A
LYS
324
n
324
LYS
324
A
LEU
325
n
325
LEU
325
A
ILE
326
n
326
ILE
326
A
THR
327
n
327
THR
327
A
TYR
328
n
328
TYR
328
A
PRO
329
n
329
PRO
329
A
ARG
330
n
330
ARG
330
A
SER
331
n
331
SER
331
A
ASP
332
n
332
ASP
332
A
CYS
333
n
333
CYS
333
A
ARG
334
n
334
ARG
334
A
TYR
335
n
335
TYR
335
A
LEU
336
n
336
LEU
336
A
PRO
337
n
337
PRO
337
A
GLU
338
n
338
GLU
338
A
GLU
339
n
339
GLU
339
A
HIS
340
n
340
HIS
340
A
PHE
341
n
341
PHE
341
A
ALA
342
n
342
ALA
342
A
GLY
343
n
343
GLY
343
A
ARG
344
n
344
ARG
344
A
HIS
345
n
345
HIS
345
A
ALA
346
n
346
ALA
346
A
VAL
347
n
347
VAL
347
A
MET
348
n
348
MET
348
A
ASN
349
n
349
ASN
349
A
ALA
350
n
350
ALA
350
A
ILE
351
n
351
ILE
351
A
SER
352
n
352
SER
352
A
VAL
353
n
353
VAL
353
A
HIS
354
n
354
HIS
354
A
ALA
355
n
355
ALA
355
A
PRO
356
n
356
PRO
356
A
ASP
357
n
357
ASP
357
A
LEU
358
n
358
LEU
358
A
LEU
359
n
359
LEU
359
A
PRO
360
n
360
PRO
360
A
GLN
361
n
361
GLN
361
A
PRO
362
n
362
PRO
362
A
VAL
363
n
363
VAL
363
A
VAL
364
n
364
VAL
364
A
ASP
365
n
365
ASP
365
A
PRO
366
n
366
PRO
366
A
ASP
367
n
367
ASP
367
A
ILE
368
n
368
ILE
368
A
ARG
369
n
369
ARG
369
A
ASN
370
n
370
ASN
370
A
ARG
371
n
371
ARG
371
A
CYS
372
n
372
CYS
372
A
TRP
373
n
373
TRP
373
A
ASP
374
n
374
ASP
374
A
ASP
375
n
375
ASP
375
A
LYS
376
n
376
LYS
376
A
LYS
377
n
377
LYS
377
A
VAL
378
n
378
VAL
378
A
ASP
379
n
379
ASP
379
A
ALA
380
n
380
ALA
380
A
HIS
381
n
381
HIS
381
A
HIS
382
n
382
HIS
382
A
ALA
383
n
383
ALA
383
A
ILE
384
n
384
ILE
384
A
ILE
385
n
385
ILE
385
A
PRO
386
n
386
PRO
386
A
THR
387
n
387
THR
387
A
ALA
388
n
388
ALA
388
A
ARG
389
n
389
ARG
389
A
SER
390
n
390
SER
390
A
SER
391
n
391
SER
391
A
ALA
392
n
392
ALA
392
A
ILE
393
n
393
ILE
393
A
ASN
394
n
394
ASN
394
A
LEU
395
n
395
LEU
395
A
THR
396
n
396
THR
396
A
GLU
397
n
397
GLU
397
A
ASN
398
n
398
ASN
398
A
GLU
399
n
399
GLU
399
A
ALA
400
n
400
ALA
400
A
LYS
401
n
401
LYS
401
A
VAL
402
n
402
VAL
402
A
TYR
403
n
403
TYR
403
A
ASN
404
n
404
ASN
404
A
LEU
405
n
405
LEU
405
A
ILE
406
n
406
ILE
406
A
ALA
407
n
407
ALA
407
A
ARG
408
n
408
ARG
408
A
GLN
409
n
409
GLN
409
A
TYR
410
n
410
TYR
410
A
LEU
411
n
411
LEU
411
A
MET
412
n
412
MET
412
A
GLN
413
n
413
GLN
413
A
PHE
414
n
414
PHE
414
A
CYS
415
n
415
CYS
415
A
PRO
416
n
416
PRO
416
A
ASP
417
n
417
ASP
417
A
ALA
418
n
418
ALA
418
A
VAL
419
n
419
VAL
419
A
PHE
420
n
420
PHE
420
A
ARG
421
n
421
ARG
421
A
LYS
422
n
422
LYS
422
A
CYS
423
n
423
CYS
423
A
VAL
424
n
424
VAL
424
A
ILE
425
n
425
ILE
425
A
GLU
426
n
426
GLU
426
A
LEU
427
n
427
LEU
427
A
ASP
428
n
428
ASP
428
A
ILE
429
n
429
ILE
429
A
ALA
430
n
430
ALA
430
A
LYS
431
n
431
LYS
431
A
GLY
432
n
432
GLY
432
A
LYS
433
n
433
LYS
433
A
PHE
434
n
434
PHE
434
A
VAL
435
n
435
VAL
435
A
ALA
436
n
436
ALA
436
A
LYS
437
n
437
LYS
437
A
ALA
438
n
438
ALA
438
A
ARG
439
n
439
ARG
439
A
PHE
440
n
440
PHE
440
A
LEU
441
n
441
LEU
441
A
ALA
442
n
442
ALA
442
A
GLU
443
n
443
GLU
443
A
ALA
444
n
444
ALA
444
A
GLY
445
n
445
GLY
445
A
TRP
446
n
446
TRP
446
A
ARG
447
n
447
ARG
447
A
THR
448
n
448
THR
448
A
LEU
449
n
449
LEU
449
A
LEU
450
n
450
LEU
450
A
GLY
451
n
451
GLY
451
A
SER
452
n
452
SER
452
A
LYS
453
n
453
LYS
453
A
GLU
454
n
454
GLU
454
A
ARG
455
n
455
ARG
455
A
ASP
456
n
456
ASP
456
A
GLU
457
n
457
GLU
457
A
GLU
458
n
458
GLU
458
A
ASN
459
n
459
ASN
459
A
ASP
460
n
460
ASP
460
A
GLY
461
n
461
GLY
461
A
THR
462
n
462
THR
462
A
PRO
463
n
463
PRO
463
A
LEU
464
n
464
LEU
464
A
PRO
465
n
465
PRO
465
A
VAL
466
n
466
VAL
466
A
VAL
467
n
467
VAL
467
A
ALA
468
n
468
ALA
468
A
LYS
469
n
469
LYS
469
A
GLY
470
n
470
GLY
470
A
ASP
471
n
471
ASP
471
A
GLU
472
n
472
GLU
472
A
LEU
473
n
473
LEU
473
A
LEU
474
n
474
LEU
474
A
CYS
475
n
475
CYS
475
A
GLU
476
n
476
GLU
476
A
LYS
477
n
477
LYS
477
A
GLY
478
n
478
GLY
478
A
GLU
479
n
479
GLU
479
A
VAL
480
n
480
VAL
480
A
VAL
481
n
481
VAL
481
A
GLU
482
n
482
GLU
482
A
ARG
483
n
483
ARG
483
A
GLN
484
n
484
GLN
484
A
THR
485
n
485
THR
485
A
GLN
486
n
486
GLN
486
A
PRO
487
n
487
PRO
487
A
PRO
488
n
488
PRO
488
A
ARG
489
n
489
ARG
489
A
HIS
490
n
490
HIS
490
A
PHE
491
n
491
PHE
491
A
THR
492
n
492
THR
492
A
ASP
493
n
493
ASP
493
A
ALA
494
n
494
ALA
494
A
THR
495
n
495
THR
495
A
LEU
496
n
496
LEU
496
A
LEU
497
n
497
LEU
497
A
SER
498
n
498
SER
498
A
ALA
499
n
499
ALA
499
A
MET
500
n
500
MET
500
A
THR
501
n
501
THR
501
A
GLY
502
n
502
GLY
502
A
ILE
503
n
503
ILE
503
A
ALA
504
n
504
ALA
504
A
ARG
505
n
505
ARG
505
A
PHE
506
n
506
PHE
506
A
VAL
507
n
507
VAL
507
A
GLN
508
n
508
GLN
508
A
ASP
509
n
509
ASP
509
A
LYS
510
n
510
LYS
510
A
ASP
511
n
511
ASP
511
A
LEU
512
n
512
LEU
512
A
LYS
513
n
513
LYS
513
A
LYS
514
n
514
LYS
514
A
ILE
515
n
515
ILE
515
A
LEU
516
n
516
LEU
516
A
ARG
517
n
517
ARG
517
A
ALA
518
n
518
ALA
518
A
THR
519
n
519
THR
519
A
ASP
520
n
520
ASP
520
A
GLY
521
n
521
GLY
521
A
LEU
522
n
522
LEU
522
A
GLY
523
n
523
GLY
523
A
THR
524
n
524
THR
524
A
GLU
525
n
525
GLU
525
A
ALA
526
n
526
ALA
526
A
THR
527
n
527
THR
527
A
ARG
528
n
528
ARG
528
A
ALA
529
n
529
ALA
529
A
GLY
530
n
530
GLY
530
A
ILE
531
n
531
ILE
531
A
ILE
532
n
532
ILE
532
A
GLU
533
n
533
GLU
533
A
LEU
534
n
534
LEU
534
A
LEU
535
n
535
LEU
535
A
PHE
536
n
536
PHE
536
A
LYS
537
n
537
LYS
537
A
ARG
538
n
538
ARG
538
A
GLY
539
n
539
GLY
539
A
PHE
540
n
540
PHE
540
A
LEU
541
n
541
LEU
541
A
THR
542
n
542
THR
542
A
LYS
543
n
543
LYS
543
A
LYS
544
n
544
LYS
544
A
GLY
545
n
545
GLY
545
A
ARG
546
n
546
ARG
546
A
TYR
547
n
547
TYR
547
A
ILE
548
n
548
ILE
548
A
HIS
549
n
549
HIS
549
A
SER
550
n
550
SER
550
A
THR
551
n
551
THR
551
A
ASP
552
n
552
ASP
552
A
ALA
553
n
553
ALA
553
A
GLY
554
n
554
GLY
554
A
LYS
555
n
555
LYS
555
A
ALA
556
n
556
ALA
556
A
LEU
557
n
557
LEU
557
A
PHE
558
n
558
PHE
558
A
HIS
559
n
559
HIS
559
A
SER
560
n
560
SER
560
A
LEU
561
n
561
LEU
561
A
PRO
562
n
562
PRO
562
A
GLU
563
n
563
GLU
563
A
MET
564
n
564
MET
564
A
ALA
565
n
565
ALA
565
A
THR
566
n
566
THR
566
A
ARG
567
n
567
ARG
567
A
PRO
568
n
568
PRO
568
A
ASP
569
n
569
ASP
569
A
MET
570
n
570
MET
570
A
THR
571
n
571
THR
571
A
ALA
572
n
572
ALA
572
A
HIS
573
n
573
HIS
573
A
TRP
574
n
574
TRP
574
A
GLU
575
n
575
GLU
575
A
SER
576
n
576
SER
576
A
VAL
577
n
577
VAL
577
A
LEU
578
n
578
LEU
578
A
THR
579
n
579
THR
579
A
GLN
580
n
580
GLN
580
A
ILE
581
n
581
ILE
581
A
SER
582
n
582
SER
582
A
GLU
583
n
583
GLU
583
A
LYS
584
n
584
LYS
584
A
GLN
585
n
585
GLN
585
A
CYS
586
n
586
CYS
586
A
ARG
587
n
587
ARG
587
A
TYR
588
n
588
TYR
588
A
GLN
589
n
589
GLN
589
A
ASP
590
n
590
ASP
590
A
PHE
591
n
591
PHE
591
A
MET
592
n
592
MET
592
A
GLN
593
n
593
GLN
593
A
PRO
594
n
594
PRO
594
A
LEU
595
n
595
LEU
595
A
VAL
596
n
596
VAL
596
A
GLY
597
n
597
GLY
597
A
THR
598
n
598
THR
598
A
LEU
599
n
599
LEU
599
A
TYR
600
n
600
TYR
600
A
GLN
601
n
601
GLN
601
A
LEU
602
n
602
LEU
602
A
ILE
603
n
603
ILE
603
A
ASP
604
n
604
ASP
604
A
GLN
605
n
605
GLN
605
A
ALA
606
n
606
ALA
606
A
LYS
607
n
607
LYS
607
A
ARG
608
n
608
ARG
608
A
THR
609
n
609
THR
609
A
n
610
610
A
n
611
611
A
n
612
612
A
n
613
613
A
n
614
614
A
n
615
615
A
n
616
616
A
n
617
617
A
n
618
618
A
n
619
619
A
n
620
620
A
n
621
621
A
n
622
622
A
n
623
623
A
n
624
624
A
n
625
625
A
n
626
626
A
n
627
627
A
n
628
628
A
n
629
629
A
n
630
630
A
n
631
631
A
n
632
632
A
n
633
633
A
n
634
634
A
n
635
635
A
n
636
636
A
n
637
637
A
n
638
638
A
n
639
639
A
n
640
640
A
n
641
641
A
n
642
642
A
n
643
643
A
n
644
644
A
n
645
645
A
n
646
646
A
n
647
647
A
n
648
648
A
n
649
649
A
n
650
650
A
n
651
651
A
n
652
652
A
n
653
653
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
24
A
N
ARG
24
A
O
GLU
31
A
O
GLU
31
A
N
CYS
32
A
N
CYS
32
A
O
GLN
36
A
O
GLN
36
A
N
VAL
37
A
N
VAL
37
A
O
ARG
2
A
O
ARG
2
A
N
LEU
3
A
N
LEU
3
A
O
GLU
97
A
O
GLU
97
A
N
HIS
100
A
N
HIS
100
A
O
GLN
130
A
O
GLN
130
A
N
ARG
131
A
N
ARG
131
A
O
ARG
150
A
O
ARG
150
A
O
GLU
47
A
O
GLU
47
A
N
GLN
76
A
N
GLN
76
A
N
ILE
228
A
N
ILE
228
A
O
PHE
236
A
O
PHE
236
A
N
TRP
240
A
N
TRP
240
A
O
VAL
224
A
O
VAL
224
A
O
VAL
229
A
O
VAL
229
A
N
LEU
474
A
N
LEU
474
A
N
LEU
473
A
N
LEU
473
A
O
ALA
274
A
O
ALA
274
A
O
GLU
286
A
O
GLU
286
A
N
ALA
418
A
N
ALA
418
A
O
ILE
429
A
O
ILE
429
A
N
GLY
432
A
N
GLY
432
A
O
LYS
544
A
O
LYS
544
A
N
TYR
547
A
N
TYR
547
1
A
ARG
185
A
ARG
185
1
Y
1
A
ASN
186
A
ASN
186
1
Y
1
A
ALA
187
A
ALA
187
1
Y
1
A
GLY
188
A
GLY
188
1
Y
1
A
TYR
189
A
TYR
189
1
Y
1
A
GLN
190
A
GLN
190
1
Y
1
A
PRO
610
A
PRO
610
1
Y
1
A
VAL
611
A
VAL
611
1
Y
1
A
ARG
612
A
ARG
612
1
Y
1
A
GLN
613
A
GLN
613
1
Y
1
A
PHE
614
A
PHE
614
1
Y
1
A
ARG
615
A
ARG
615
1
Y
1
A
GLY
616
A
GLY
616
1
Y
1
A
ILE
617
A
ILE
617
1
Y
1
A
VAL
618
A
VAL
618
1
Y
1
A
ALA
619
A
ALA
619
1
Y
1
A
PRO
620
A
PRO
620
1
Y
1
A
GLY
621
A
GLY
621
1
Y
1
A
SER
622
A
SER
622
1
Y
1
A
GLY
623
A
GLY
623
1
Y
1
A
GLY
624
A
GLY
624
1
Y
1
A
SER
625
A
SER
625
1
Y
1
A
ALA
626
A
ALA
626
1
Y
1
A
ASP
627
A
ASP
627
1
Y
1
A
LYS
628
A
LYS
628
1
Y
1
A
LYS
629
A
LYS
629
1
Y
1
A
LYS
630
A
LYS
630
1
Y
1
A
ALA
631
A
ALA
631
1
Y
1
A
ALA
632
A
ALA
632
1
Y
1
A
PRO
633
A
PRO
633
1
Y
1
A
ARG
634
A
ARG
634
1
Y
1
A
LYS
635
A
LYS
635
1
Y
1
A
ARG
636
A
ARG
636
1
Y
1
A
SER
637
A
SER
637
1
Y
1
A
ALA
638
A
ALA
638
1
Y
1
A
LYS
639
A
LYS
639
1
Y
1
A
LYS
640
A
LYS
640
1
Y
1
A
SER
641
A
SER
641
1
Y
1
A
PRO
642
A
PRO
642
1
Y
1
A
PRO
643
A
PRO
643
1
Y
1
A
ALA
644
A
ALA
644
1
Y
1
A
ASP
645
A
ASP
645
1
Y
1
A
GLU
646
A
GLU
646
1
Y
1
A
VAL
647
A
VAL
647
1
Y
1
A
GLY
648
A
GLY
648
1
Y
1
A
SER
649
A
SER
649
1
Y
1
A
GLY
650
A
GLY
650
1
Y
1
A
ALA
651
A
ALA
651
1
Y
1
A
ILE
652
A
ILE
652
1
Y
1
A
ALA
653
A
ALA
653
1
Y
1
A
PHE
221
14.37
1
A
GLU
338
-10.55
1
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
2
2
2
N
1
-3.51
0.50
120.30
116.79
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
2
2
2
N
1
-3.32
0.50
120.30
116.98
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
165
165
165
N
1
8.42
1.40
123.60
132.02
A
A
A
CD
NE
CZ
ARG
ARG
ARG
259
259
259
N
1
-3.06
0.50
120.30
117.24
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
369
369
369
N
1
10.39
1.40
123.60
133.99
A
A
A
CD
NE
CZ
ARG
ARG
ARG
546
546
546
N
1
A
PRO
20
-49.01
152.49
1
A
LYS
21
-28.46
-66.33
1
A
PRO
67
-57.24
101.19
1
A
PRO
104
-87.62
39.91
1
A
ARG
148
-109.97
79.66
1
A
ASP
233
89.61
6.83
1
A
PRO
242
-47.06
150.07
1
A
SER
243
-59.46
-179.65
1
A
SER
308
-53.29
171.59
1
A
THR
322
-71.20
-79.31
1
A
ILE
326
-174.61
148.31
1
A
TYR
328
-35.74
111.60
1
A
GLN
361
10.01
109.83
1
A
ASN
370
-60.72
-163.90
1
A
ASP
374
-164.96
97.60
1
A
ASP
379
-128.22
-83.53
1
A
HIS
382
-121.42
-167.75
1
A
GLN
413
-49.92
-15.78
1
A
LYS
431
81.28
-5.81
1
A
LYS
477
168.05
152.24
1
A
GLU
525
-27.37
-71.28
1
A
CYS
586
177.32
140.48
PROTEIN_REP.PA
PROTEIN.TOP
51.9
1.92
8.16
0.00
1.92
0.00
-3.84
Refinement done with REFMAC. The solvent correction was calculated with XPLOR
and applied in REFMAC. Final parameters obtained with CNS 0.4
0.2680000
0.007
0.2370000
0.2390000
0.2390000
3.00
10.00
1643
32569
32569
5.0
93.6
RANDOM
24861467.80
0.00
1
GROUP
THROUGHOUT
0.0
0.0
Engh & Huber
0.43
0.37
5.00
0.61
0.44
3.00
10.00
0
4798
0
0
4798
2.3
0.007
0.3670000
0.024
0.3040000
3.18
227
4207
6
5.1
77.5
47.4
3.0
50.0
1D6M
33563
136735
0
0
0.0800000
1
0.072
4.1
95.9
0.0260000
3.0
3.08
2169
2.6
85.5
phasing
MLPHARE
refinement
REFMAC
refinement
X-PLOR
data reduction
DENZO
data scaling
CCP4
(SCALA)
CRYSTAL STRUCTURE OF E. COLI DNA TOPOISOMERASE III
1
N
N
A
LYS
8
A
LYS
8
HELX_P
A
VAL
18
A
VAL
18
1
1
11
A
GLN
50
A
GLN
50
HELX_P
A
ASP
55
A
ASP
55
1
2
6
A
SER
56
A
SER
56
HELX_P
A
ARG
60
A
ARG
60
5
3
5
A
ASN
62
A
ASN
62
HELX_P
A
LEU
66
A
LEU
66
5
4
5
A
VAL
81
A
VAL
81
HELX_P
A
ALA
95
A
ALA
95
1
5
15
A
ASP
105
A
ASP
105
HELX_P
A
LEU
119
A
LEU
119
1
6
15
A
ALA
122
A
ALA
122
HELX_P
A
GLN
127
A
GLN
127
1
7
6
A
ASN
138
A
ASN
138
HELX_P
A
ARG
148
A
ARG
148
1
8
11
A
PHE
155
A
PHE
155
HELX_P
A
GLY
184
A
GLY
184
1
9
30
A
VAL
198
A
VAL
198
HELX_P
A
ASN
215
A
ASN
215
1
10
18
A
SER
243
A
SER
243
HELX_P
A
TYR
249
A
TYR
249
5
11
7
A
HIS
258
A
HIS
258
HELX_P
A
SER
270
A
SER
270
1
12
13
A
SER
293
A
SER
293
HELX_P
A
GLY
306
A
GLY
306
1
13
14
A
SER
308
A
SER
308
HELX_P
A
THR
322
A
THR
322
1
14
15
A
PRO
337
A
PRO
337
HELX_P
A
ALA
342
A
ALA
342
5
15
6
A
GLY
343
A
GLY
343
HELX_P
A
ALA
355
A
ALA
355
1
16
13
A
ASP
374
A
ASP
374
HELX_P
A
VAL
378
A
VAL
378
5
17
5
A
THR
396
A
THR
396
HELX_P
A
GLN
413
A
GLN
413
1
18
18
A
ALA
444
A
ALA
444
HELX_P
A
LEU
449
A
LEU
449
5
19
6
A
GLY
451
A
GLY
451
HELX_P
A
ASP
456
A
ASP
456
1
20
6
A
THR
492
A
THR
492
HELX_P
A
GLY
502
A
GLY
502
1
21
11
A
ILE
503
A
ILE
503
HELX_P
A
VAL
507
A
VAL
507
5
22
5
A
ASP
509
A
ASP
509
HELX_P
A
LEU
516
A
LEU
516
1
23
8
A
ALA
526
A
ALA
526
HELX_P
A
ARG
538
A
ARG
538
1
24
13
A
THR
551
A
THR
551
HELX_P
A
LEU
561
A
LEU
561
1
25
11
A
PRO
562
A
PRO
562
HELX_P
A
ARG
567
A
ARG
567
1
26
6
A
PRO
568
A
PRO
568
HELX_P
A
GLU
583
A
GLU
583
1
27
16
A
ARG
587
A
ARG
587
HELX_P
A
THR
609
A
THR
609
1
28
23
ISOMERASE
DNA TOPOISOMERASE, DECATENATING ENZYME, ISOMERASE
TOP3_ECOLI
UNP
1
P14294
1
653
1D6M
1
653
P14294
A
1
1
653
7
2
7
2
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
24
A
ARG
24
A
LYS
25
A
LYS
25
A
ILE
30
A
ILE
30
A
CYS
32
A
CYS
32
A
GLN
36
A
GLN
36
A
TRP
40
A
TRP
40
A
ARG
2
A
ARG
2
A
ALA
6
A
ALA
6
A
GLU
97
A
GLU
97
A
ALA
101
A
ALA
101
A
GLN
130
A
GLN
130
A
ARG
131
A
ARG
131
A
ARG
150
A
ARG
150
A
SER
151
A
SER
151
A
LEU
46
A
LEU
46
A
GLN
48
A
GLN
48
A
LEU
75
A
LEU
75
A
PRO
77
A
PRO
77
A
ASP
220
A
ASP
220
A
VAL
229
A
VAL
229
A
ARG
235
A
ARG
235
A
TRP
240
A
TRP
240
A
ASP
220
A
ASP
220
A
VAL
229
A
VAL
229
A
GLU
472
A
GLU
472
A
GLN
484
A
GLN
484
A
PRO
273
A
PRO
273
A
GLU
286
A
GLU
286
A
ALA
418
A
ALA
418
A
ILE
429
A
ILE
429
A
GLY
432
A
GLY
432
A
GLU
443
A
GLU
443
A
LEU
541
A
LEU
541
A
LYS
544
A
LYS
544
A
TYR
547
A
TYR
547
A
SER
550
A
SER
550
178
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