0.014000 0.000000 0.002721 0.000000 0.013953 0.000000 0.000000 0.000000 0.014061 0.00000 0.00000 0.00000 Mochalkin, I. Tulinsky, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.00 90.00 71.430 71.670 72.450 C24 H29 N7 O5 S 527.596 (5S)-N-[trans-4-(2-amino-1H-imidazol-5-yl)cyclohexyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 56 294 303 10.1107/S0907444900000068 10713516 Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at P1. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123.0 1 IMAGE PLATE 1999-01-05 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 33093.992 THROMBIN 3.4.21.5 1 nat polymer 1363.399 DECAPEPTIDE INHIBITOR 1 syn polymer 22.990 SODIUM ION 2 syn non-polymer 527.596 (5S)-N-[trans-4-(2-amino-1H-imidazol-5-yl)cyclohexyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide 1 syn non-polymer 18.015 water 133 nat water no no ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF A polypeptide(L) no yes DFEEIPEE(TYS)L DFEEIPEEYL I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 1 2.64 53.41 VAPOR DIFFUSION, HANGING DROP 7.3 24% PEG 8000, 0.1M Sodium Phosphate buffer, Protein concentration: 3.5 mg/ml, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Other Refinement description 1 0 2000-10-25 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-12-12 1 4 2013-03-13 1 5 2017-10-04 RCSB Y RCSB 1999-10-15 REL NA SODIUM ION 00R (5S)-N-[trans-4-(2-amino-1H-imidazol-5-yl)cyclohexyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide HOH water THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED 6421 Hirudo medicinalis sample NA 950 3 NA NA 950 A NA 951 3 NA NA 951 A 00R 380 4 00R 00R 380 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 426 5 HOH HOH 426 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 433 5 HOH HOH 433 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 437 5 HOH HOH 437 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 442 5 HOH HOH 442 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 454 5 HOH HOH 454 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 459 5 HOH HOH 459 A HOH 460 5 HOH HOH 460 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 463 5 HOH HOH 463 A HOH 465 5 HOH HOH 465 A HOH 466 5 HOH HOH 466 A HOH 467 5 HOH HOH 467 A HOH 468 5 HOH HOH 468 A HOH 471 5 HOH HOH 471 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 476 5 HOH HOH 476 A HOH 477 5 HOH HOH 477 A HOH 479 5 HOH HOH 479 A HOH 482 5 HOH HOH 482 A HOH 483 5 HOH HOH 483 A HOH 488 5 HOH HOH 488 A HOH 490 5 HOH HOH 490 A HOH 491 5 HOH HOH 491 A HOH 493 5 HOH HOH 493 A HOH 494 5 HOH HOH 494 A HOH 495 5 HOH HOH 495 A HOH 496 5 HOH HOH 496 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 509 5 HOH HOH 509 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A HOH 532 5 HOH HOH 532 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 536 5 HOH HOH 536 A HOH 537 5 HOH HOH 537 A HOH 540 5 HOH HOH 540 A HOH 541 5 HOH HOH 541 A HOH 543 5 HOH HOH 543 A HOH 545 5 HOH HOH 545 A HOH 546 5 HOH HOH 546 A HOH 547 5 HOH HOH 547 A HOH 548 5 HOH HOH 548 A HOH 549 5 HOH HOH 549 A HOH 551 5 HOH HOH 551 A HOH 552 5 HOH HOH 552 A HOH 554 5 HOH HOH 554 A HOH 555 5 HOH HOH 555 A HOH 556 5 HOH HOH 556 A HOH 557 5 HOH HOH 557 A HOH 558 5 HOH HOH 558 A HOH 559 5 HOH HOH 559 A HOH 562 5 HOH HOH 562 A HOH 563 5 HOH HOH 563 A HOH 564 5 HOH HOH 564 A HOH 566 5 HOH HOH 566 A HOH 567 5 HOH HOH 567 A HOH 570 5 HOH HOH 570 A HOH 571 5 HOH HOH 571 A HOH 574 5 HOH HOH 574 A HOH 575 5 HOH HOH 575 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 499 5 HOH HOH 499 I HOH 525 5 HOH HOH 525 I ALA 1 n 1 B ALA 1 A ASP 1 n 2 A ASP 1 A CYS 1 n 3 CYS 1 A GLY 2 n 4 GLY 2 A LEU 3 n 5 LEU 3 A ARG 4 n 6 ARG 4 A PRO 5 n 7 PRO 5 A LEU 6 n 8 LEU 6 A PHE 7 n 9 PHE 7 A GLU 8 n 10 GLU 8 A LYS 9 n 11 LYS 9 A LYS 10 n 12 LYS 10 A SER 11 n 13 SER 11 A LEU 12 n 14 LEU 12 A GLU 13 n 15 GLU 13 A ASP 14 n 16 ASP 14 A LYS 14 n 17 A LYS 14 A THR 14 n 18 B THR 14 A GLU 14 n 19 C GLU 14 A ARG 14 n 20 D ARG 14 A GLU 14 n 21 E GLU 14 A LEU 14 n 22 F LEU 14 A LEU 14 n 23 G LEU 14 A GLU 14 n 24 H GLU 14 A SER 14 n 25 I SER 14 A TYR 14 n 26 J TYR 14 A ILE 14 n 27 K ILE 14 A ASP 14 n 28 L ASP 14 A n 29 M 14 A n 30 N 14 A ILE 16 n 31 ILE 16 A VAL 17 n 32 VAL 17 A GLU 18 n 33 GLU 18 A GLY 19 n 34 GLY 19 A SER 20 n 35 SER 20 A ASP 21 n 36 ASP 21 A ALA 22 n 37 ALA 22 A GLU 23 n 38 GLU 23 A ILE 24 n 39 ILE 24 A GLY 25 n 40 GLY 25 A MET 26 n 41 MET 26 A SER 27 n 42 SER 27 A PRO 28 n 43 PRO 28 A TRP 29 n 44 TRP 29 A GLN 30 n 45 GLN 30 A VAL 31 n 46 VAL 31 A MET 32 n 47 MET 32 A LEU 33 n 48 LEU 33 A PHE 34 n 49 PHE 34 A ARG 35 n 50 ARG 35 A LYS 36 n 51 LYS 36 A SER 36 n 52 A SER 36 A PRO 37 n 53 PRO 37 A GLN 38 n 54 GLN 38 A GLU 39 n 55 GLU 39 A LEU 40 n 56 LEU 40 A LEU 41 n 57 LEU 41 A CYS 42 n 58 CYS 42 A GLY 43 n 59 GLY 43 A ALA 44 n 60 ALA 44 A SER 45 n 61 SER 45 A LEU 46 n 62 LEU 46 A ILE 47 n 63 ILE 47 A SER 48 n 64 SER 48 A ASP 49 n 65 ASP 49 A ARG 50 n 66 ARG 50 A TRP 51 n 67 TRP 51 A VAL 52 n 68 VAL 52 A LEU 53 n 69 LEU 53 A THR 54 n 70 THR 54 A ALA 55 n 71 ALA 55 A ALA 56 n 72 ALA 56 A HIS 57 n 73 HIS 57 A CYS 58 n 74 CYS 58 A LEU 59 n 75 LEU 59 A LEU 60 n 76 LEU 60 A TYR 60 n 77 A TYR 60 A PRO 60 n 78 B PRO 60 A PRO 60 n 79 C PRO 60 A TRP 60 n 80 D TRP 60 A ASP 60 n 81 E ASP 60 A LYS 60 n 82 F LYS 60 A ASN 60 n 83 G ASN 60 A PHE 60 n 84 H PHE 60 A THR 60 n 85 I THR 60 A GLU 61 n 86 GLU 61 A ASN 62 n 87 ASN 62 A ASP 63 n 88 ASP 63 A LEU 64 n 89 LEU 64 A LEU 65 n 90 LEU 65 A VAL 66 n 91 VAL 66 A ARG 67 n 92 ARG 67 A ILE 68 n 93 ILE 68 A GLY 69 n 94 GLY 69 A LYS 70 n 95 LYS 70 A HIS 71 n 96 HIS 71 A SER 72 n 97 SER 72 A ARG 73 n 98 ARG 73 A THR 74 n 99 THR 74 A ARG 75 n 100 ARG 75 A TYR 76 n 101 TYR 76 A GLU 77 n 102 GLU 77 A ARG 77 n 103 A ARG 77 A ASN 78 n 104 ASN 78 A ILE 79 n 105 ILE 79 A GLU 80 n 106 GLU 80 A LYS 81 n 107 LYS 81 A ILE 82 n 108 ILE 82 A SER 83 n 109 SER 83 A MET 84 n 110 MET 84 A LEU 85 n 111 LEU 85 A GLU 86 n 112 GLU 86 A LYS 87 n 113 LYS 87 A ILE 88 n 114 ILE 88 A TYR 89 n 115 TYR 89 A ILE 90 n 116 ILE 90 A HIS 91 n 117 HIS 91 A PRO 92 n 118 PRO 92 A ARG 93 n 119 ARG 93 A TYR 94 n 120 TYR 94 A ASN 95 n 121 ASN 95 A TRP 96 n 122 TRP 96 A ARG 97 n 123 ARG 97 A GLU 97 n 124 A GLU 97 A ASN 98 n 125 ASN 98 A LEU 99 n 126 LEU 99 A ASP 100 n 127 ASP 100 A ARG 101 n 128 ARG 101 A ASP 102 n 129 ASP 102 A ILE 103 n 130 ILE 103 A ALA 104 n 131 ALA 104 A LEU 105 n 132 LEU 105 A MET 106 n 133 MET 106 A LYS 107 n 134 LYS 107 A LEU 108 n 135 LEU 108 A LYS 109 n 136 LYS 109 A LYS 110 n 137 LYS 110 A PRO 111 n 138 PRO 111 A VAL 112 n 139 VAL 112 A ALA 113 n 140 ALA 113 A PHE 114 n 141 PHE 114 A SER 115 n 142 SER 115 A ASP 116 n 143 ASP 116 A TYR 117 n 144 TYR 117 A ILE 118 n 145 ILE 118 A HIS 119 n 146 HIS 119 A PRO 120 n 147 PRO 120 A VAL 121 n 148 VAL 121 A CYS 122 n 149 CYS 122 A LEU 123 n 150 LEU 123 A PRO 124 n 151 PRO 124 A ASP 125 n 152 ASP 125 A ARG 126 n 153 ARG 126 A GLU 127 n 154 GLU 127 A THR 128 n 155 THR 128 A ALA 129 n 156 ALA 129 A ALA 129 n 157 A ALA 129 A SER 129 n 158 B SER 129 A LEU 129 n 159 C LEU 129 A LEU 130 n 160 LEU 130 A GLN 131 n 161 GLN 131 A ALA 132 n 162 ALA 132 A GLY 133 n 163 GLY 133 A TYR 134 n 164 TYR 134 A LYS 135 n 165 LYS 135 A GLY 136 n 166 GLY 136 A ARG 137 n 167 ARG 137 A VAL 138 n 168 VAL 138 A THR 139 n 169 THR 139 A GLY 140 n 170 GLY 140 A TRP 141 n 171 TRP 141 A GLY 142 n 172 GLY 142 A ASN 143 n 173 ASN 143 A LEU 144 n 174 LEU 144 A LYS 145 n 175 LYS 145 A GLU 146 n 176 GLU 146 A THR 147 n 177 THR 147 A n 178 A 147 A n 179 B 147 A n 180 C 147 A n 181 D 147 A n 182 E 147 A n 183 F 147 A n 184 G 147 A GLY 150 n 185 GLY 150 A GLN 151 n 186 GLN 151 A PRO 152 n 187 PRO 152 A SER 153 n 188 SER 153 A VAL 154 n 189 VAL 154 A LEU 155 n 190 LEU 155 A GLN 156 n 191 GLN 156 A VAL 157 n 192 VAL 157 A VAL 158 n 193 VAL 158 A ASN 159 n 194 ASN 159 A LEU 160 n 195 LEU 160 A PRO 161 n 196 PRO 161 A ILE 162 n 197 ILE 162 A VAL 163 n 198 VAL 163 A GLU 164 n 199 GLU 164 A ARG 165 n 200 ARG 165 A PRO 166 n 201 PRO 166 A VAL 167 n 202 VAL 167 A CYS 168 n 203 CYS 168 A LYS 169 n 204 LYS 169 A ASP 170 n 205 ASP 170 A SER 171 n 206 SER 171 A THR 172 n 207 THR 172 A ARG 173 n 208 ARG 173 A ILE 174 n 209 ILE 174 A ARG 175 n 210 ARG 175 A ILE 176 n 211 ILE 176 A THR 177 n 212 THR 177 A ASP 178 n 213 ASP 178 A ASN 179 n 214 ASN 179 A MET 180 n 215 MET 180 A PHE 181 n 216 PHE 181 A CYS 182 n 217 CYS 182 A ALA 183 n 218 ALA 183 A GLY 184 n 219 GLY 184 A TYR 184 n 220 A TYR 184 A LYS 185 n 221 LYS 185 A PRO 186 n 222 PRO 186 A ASP 186 n 223 A ASP 186 A GLU 186 n 224 B GLU 186 A GLY 186 n 225 C GLY 186 A LYS 186 n 226 D LYS 186 A ARG 187 n 227 ARG 187 A GLY 188 n 228 GLY 188 A ASP 189 n 229 ASP 189 A ALA 190 n 230 ALA 190 A CYS 191 n 231 CYS 191 A GLU 192 n 232 GLU 192 A GLY 193 n 233 GLY 193 A ASP 194 n 234 ASP 194 A SER 195 n 235 SER 195 A GLY 196 n 236 GLY 196 A GLY 197 n 237 GLY 197 A PRO 198 n 238 PRO 198 A PHE 199 n 239 PHE 199 A VAL 200 n 240 VAL 200 A MET 201 n 241 MET 201 A LYS 202 n 242 LYS 202 A SER 203 n 243 SER 203 A PRO 204 n 244 PRO 204 A PHE 204 n 245 A PHE 204 A ASN 204 n 246 B ASN 204 A ASN 205 n 247 ASN 205 A ARG 206 n 248 ARG 206 A TRP 207 n 249 TRP 207 A TYR 208 n 250 TYR 208 A GLN 209 n 251 GLN 209 A MET 210 n 252 MET 210 A GLY 211 n 253 GLY 211 A ILE 212 n 254 ILE 212 A VAL 213 n 255 VAL 213 A SER 214 n 256 SER 214 A TRP 215 n 257 TRP 215 A GLY 216 n 258 GLY 216 A GLU 217 n 259 GLU 217 A GLY 219 n 260 GLY 219 A CYS 220 n 261 CYS 220 A ASP 221 n 262 ASP 221 A ARG 221 n 263 A ARG 221 A ASP 222 n 264 ASP 222 A GLY 223 n 265 GLY 223 A LYS 224 n 266 LYS 224 A TYR 225 n 267 TYR 225 A GLY 226 n 268 GLY 226 A PHE 227 n 269 PHE 227 A TYR 228 n 270 TYR 228 A THR 229 n 271 THR 229 A HIS 230 n 272 HIS 230 A VAL 231 n 273 VAL 231 A PHE 232 n 274 PHE 232 A ARG 233 n 275 ARG 233 A LEU 234 n 276 LEU 234 A LYS 235 n 277 LYS 235 A LYS 236 n 278 LYS 236 A TRP 237 n 279 TRP 237 A ILE 238 n 280 ILE 238 A GLN 239 n 281 GLN 239 A LYS 240 n 282 LYS 240 A VAL 241 n 283 VAL 241 A ILE 242 n 284 ILE 242 A ASP 243 n 285 ASP 243 A GLN 244 n 286 GLN 244 A PHE 245 n 287 PHE 245 A ASP 355 n 1 ASP 355 I PHE 356 n 2 PHE 356 I GLU 357 n 3 GLU 357 I GLU 358 n 4 GLU 358 I ILE 359 n 5 ILE 359 I PRO 360 n 6 PRO 360 I GLU 361 n 7 GLU 361 I GLU 362 n 8 GLU 362 I TYS 363 n 9 TYS 363 I LEU 364 n 10 LEU 364 I author_defined_assembly 2 dimeric A THR 172 A O THR 207 1_555 A NA 950 C NA NA 1_555 A HOH 494 F O HOH 1_555 95.9 A THR 172 A O THR 207 1_555 A NA 950 C NA NA 1_555 A LYS 169 A O LYS 204 1_555 74.0 A HOH 494 F O HOH 1_555 A NA 950 C NA NA 1_555 A LYS 169 A O LYS 204 1_555 165.2 A THR 172 A O THR 207 1_555 A NA 950 C NA NA 1_555 A A PHE 204 A O PHE 245 4_546 96.7 A HOH 494 F O HOH 1_555 A NA 950 C NA NA 1_555 A A PHE 204 A O PHE 245 4_546 95.3 A LYS 169 A O LYS 204 1_555 A NA 950 C NA NA 1_555 A A PHE 204 A O PHE 245 4_546 96.6 A THR 172 A O THR 207 1_555 A NA 950 C NA NA 1_555 A HOH 497 F O HOH 1_555 67.7 A HOH 494 F O HOH 1_555 A NA 950 C NA NA 1_555 A HOH 497 F O HOH 1_555 93.0 A LYS 169 A O LYS 204 1_555 A NA 950 C NA NA 1_555 A HOH 497 F O HOH 1_555 73.3 A A PHE 204 A O PHE 245 4_546 A NA 950 C NA NA 1_555 A HOH 497 F O HOH 1_555 163.0 A HOH 459 F O HOH 1_555 A NA 951 D NA NA 1_555 A LYS 224 A O LYS 266 1_555 78.4 A HOH 459 F O HOH 1_555 A NA 951 D NA NA 1_555 A A ARG 221 A O ARG 263 1_555 98.5 A LYS 224 A O LYS 266 1_555 A NA 951 D NA NA 1_555 A A ARG 221 A O ARG 263 1_555 87.9 A HOH 459 F O HOH 1_555 A NA 951 D NA NA 1_555 A HOH 530 F O HOH 1_555 120.6 A LYS 224 A O LYS 266 1_555 A NA 951 D NA NA 1_555 A HOH 530 F O HOH 1_555 152.7 A A ARG 221 A O ARG 263 1_555 A NA 951 D NA NA 1_555 A HOH 530 F O HOH 1_555 106.5 A HOH 459 F O HOH 1_555 A NA 951 D NA NA 1_555 A HOH 460 F O HOH 1_555 103.4 A LYS 224 A O LYS 266 1_555 A NA 951 D NA NA 1_555 A HOH 460 F O HOH 1_555 68.9 A A ARG 221 A O ARG 263 1_555 A NA 951 D NA NA 1_555 A HOH 460 F O HOH 1_555 143.6 A HOH 530 F O HOH 1_555 A NA 951 D NA NA 1_555 A HOH 460 F O HOH 1_555 86.7 I TYS 363 O-SULFO-L-TYROSINE B TYS 9 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 20 A O SER 35 A N VAL 157 A N VAL 192 A N LEU 160 A N LEU 195 A O GLY 136 A O GLY 166 A N THR 139 A N THR 169 A O PRO 198 A O PRO 238 A O MET 201 A O MET 241 A N TYR 208 A N TYR 250 A O TRP 215 A O TRP 257 A N PHE 227 A N PHE 269 A N TYR 228 A N TYR 270 A O PHE 181 A O PHE 216 A N ARG 35 A N ARG 50 A O GLU 39 A O GLU 55 A O SER 45 A O SER 61 A N LEU 53 A N LEU 69 A N THR 54 A N THR 70 A O ALA 104 A O ALA 131 A O LYS 107 A O LYS 134 A N GLU 86 A N GLU 112 A N LEU 85 A N LEU 111 A O LEU 64 A O LEU 89 A O ARG 67 A O ARG 92 A N MET 32 A N MET 47 A A N TYR 60 A N TYR 77 F A O LYS 60 A O LYS 82 1 A HOH 526 F HOH 1 I HOH 525 G HOH 1 I CB GLU 358 B CB GLU 4 1 Y 1 I CG GLU 358 B CG GLU 4 1 Y 1 I CD GLU 358 B CD GLU 4 1 Y 1 I OE1 GLU 358 B OE1 GLU 4 1 Y 1 I OE2 GLU 358 B OE2 GLU 4 1 Y M 1 A GLY 14 A GLY 29 1 Y N 1 A ARG 14 A ARG 30 1 Y A 1 A TRP 147 A TRP 178 1 Y B 1 A THR 147 A THR 179 1 Y C 1 A ALA 147 A ALA 180 1 Y D 1 A ASN 147 A ASN 181 1 Y E 1 A VAL 147 A VAL 182 1 Y F 1 A GLY 147 A GLY 183 1 Y G 1 A LYS 147 A LYS 184 1 Y 1 A A CE NE2 LYS GLN 240 244 2.18 1 A ARG 73 0.105 SIDE CHAIN 1 A ARG 165 0.180 SIDE CHAIN A A A 1 -6.04 0.90 118.30 112.26 A A A CB CG OD2 ASP ASP ASP 1 1 1 N C C C 1 -12.75 2.00 118.30 105.55 A A A CG CD OE2 GLU GLU GLU 14 14 14 N D D D 1 8.77 1.40 123.60 132.37 A A A CD NE CZ ARG ARG ARG 14 14 14 N D D D 1 10.16 0.50 120.30 130.46 A A A NE CZ NH1 ARG ARG ARG 14 14 14 N D D D 1 -4.65 0.50 120.30 115.65 A A A NE CZ NH2 ARG ARG ARG 14 14 14 N K K K 1 13.40 2.00 111.60 125.00 A A A CB CA C ILE ILE ILE 14 14 14 N K L L 1 15.36 2.50 121.70 137.06 A A A C N CA ILE ASP ASP 14 14 14 Y L L L 1 6.14 0.90 118.30 124.44 A A A CB CG OD1 ASP ASP ASP 14 14 14 N 1 9.98 1.60 100.20 110.18 A A A CG SD CE MET MET MET 26 26 26 N 1 -4.92 0.50 120.30 115.38 A A A NE CZ NH2 ARG ARG ARG 35 35 35 N 1 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 50 50 50 N 1 3.54 0.50 120.30 123.84 A A A NE CZ NH2 ARG ARG ARG 67 67 67 N 1 4.00 0.50 120.30 124.30 A A A NE CZ NH2 ARG ARG ARG 75 75 75 N A A A 1 3.26 0.50 120.30 123.56 A A A NE CZ NH2 ARG ARG ARG 77 77 77 N 1 9.76 1.60 100.20 109.96 A A A CG SD CE MET MET MET 84 84 84 N 1 3.16 0.50 120.30 123.46 A A A NE CZ NH2 ARG ARG ARG 97 97 97 N 1 3.09 0.50 120.30 123.39 A A A NE CZ NH2 ARG ARG ARG 101 101 101 N 1 3.26 0.50 120.30 123.56 A A A NE CZ NH2 ARG ARG ARG 126 126 126 N 1 3.41 0.50 120.30 123.71 A A A NE CZ NH2 ARG ARG ARG 137 137 137 N 1 3.36 0.50 120.30 123.66 A A A NE CZ NH2 ARG ARG ARG 165 165 165 N 1 -6.41 0.50 120.30 113.89 A A A NE CZ NH2 ARG ARG ARG 173 173 173 N 1 3.35 0.50 120.30 123.65 A A A NE CZ NH2 ARG ARG ARG 175 175 175 N A A A 1 -4.90 0.60 121.00 116.10 A A A CB CG CD2 TYR TYR TYR 184 184 184 N 1 3.66 0.50 120.30 123.96 A A A NE CZ NH2 ARG ARG ARG 187 187 187 N 1 10.55 1.40 123.60 134.15 A A A CD NE CZ ARG ARG ARG 233 233 233 N 1 11.06 0.50 120.30 131.36 A A A NE CZ NH1 ARG ARG ARG 233 233 233 N 1 -8.07 0.50 120.30 112.23 A A A NE CZ NH2 ARG ARG ARG 233 233 233 N 1 12.99 2.10 120.10 133.09 I I I CA C O LEU LEU LEU 364 364 364 N 1 A PHE 7 -123.98 -83.94 A 1 A TYR 60 -156.87 81.25 G 1 A ASN 60 -163.47 79.68 1 A HIS 71 -128.85 -55.85 1 A ASN 78 71.71 -2.76 A 1 A GLU 97 -134.49 -68.00 1 A SER 195 -39.54 142.11 1 A SER 214 -109.85 -75.36 1 A ASP 243 -109.86 40.63 0.174 0.174 2.0 9.0 17152 1 1.0 2.0 9.0 133 2516 39 0 2344 0.015 0.040 2.0 60.0 1D6W 33066 17371 0.057 1 1.9 72 0.158 2.0 2.2 1 42 model building X-PLOR refinement PROLSQ phasing X-PLOR THROMBIN (E.C.3.4.21.5), PEPTIDE INHIBITOR STRUCTURE OF THROMBIN COMPLEXED WITH SELECTIVE NON-ELECTROPHILIC INHIBITORS HAVING CYCLOHEXYL MOIETIES AT P1 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N A PHE 7 A PHE 9 HELX_P A SER 11 A SER 13 5 1 5 A THR 14 A THR 18 HELX_P A TYR 14 A TYR 26 1 2 9 B J A ALA 55 A ALA 71 HELX_P A CYS 58 A CYS 74 5 3 4 A PRO 60 A PRO 78 HELX_P A ASP 60 A ASP 81 5 4 4 B E A ASP 125 A ASP 152 HELX_P A LEU 130 A LEU 160 1 5 9 A GLU 164 A GLU 199 HELX_P A ASP 170 A ASP 205 1 6 7 A LEU 234 A LEU 276 HELX_P A ASP 243 A ASP 285 1 7 10 disulf 1.929 A CYS 1 A SG CYS 3 1_555 A CYS 122 A SG CYS 149 1_555 disulf 2.029 A CYS 42 A SG CYS 58 1_555 A CYS 58 A SG CYS 74 1_555 disulf 2.008 A CYS 168 A SG CYS 203 1_555 A CYS 182 A SG CYS 217 1_555 disulf 2.088 A CYS 191 A SG CYS 231 1_555 A CYS 220 A SG CYS 261 1_555 metalc 2.388 A NA 950 C NA NA 1_555 A THR 172 A O THR 207 1_555 metalc 2.238 A NA 950 C NA NA 1_555 A HOH 494 F O HOH 1_555 metalc 2.520 A NA 950 C NA NA 1_555 A LYS 169 A O LYS 204 1_555 metalc 2.161 A NA 951 D NA NA 1_555 A HOH 459 F O HOH 1_555 metalc 2.378 A NA 951 D NA NA 1_555 A LYS 224 A O LYS 266 1_555 metalc 2.391 A A NA 951 D NA NA 1_555 A ARG 221 A O ARG 263 1_555 covale 1.326 I GLU 362 B C GLU 8 1_555 I TYS 363 B N TYS 9 1_555 covale 1.311 I TYS 363 B C TYS 9 1_555 I LEU 364 B N LEU 10 1_555 metalc 2.174 A A NA 950 C NA NA 1_555 A PHE 204 A O PHE 245 4_546 metalc 2.881 A NA 950 C NA NA 1_555 A HOH 497 F O HOH 1_555 metalc 2.716 A NA 951 D NA NA 1_555 A HOH 530 F O HOH 1_555 metalc 2.656 A NA 951 D NA NA 1_555 A HOH 460 F O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE, THROMBIN, THROMBIN INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX A SER 36 A SER 52 A 1 A PRO 37 A PRO 53 -3.37 THRB_HUMAN UNP 1 P00734 ITHK_HIRME UNP 2 55 P28511 334 620 1D6W 1 245 P00734 B A 1 1 287 55 64 1D6W 355 364 P28511 I 2 1 10 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 20 A SER 35 A ASP 21 A ASP 36 A GLN 156 A GLN 191 A PRO 161 A PRO 196 A LYS 135 A LYS 165 A GLY 140 A GLY 170 A PRO 198 A PRO 238 A LYS 202 A LYS 242 A TRP 207 A TRP 249 A TRP 215 A TRP 257 A GLY 226 A GLY 268 A HIS 230 A HIS 272 A MET 180 A MET 215 A ALA 183 A ALA 218 A GLN 30 A GLN 45 A ARG 35 A ARG 50 A GLU 39 A GLU 55 A LEU 46 A LEU 62 A TRP 51 A TRP 67 A THR 54 A THR 70 A ALA 104 A ALA 131 A LEU 108 A LEU 135 A LYS 81 A LYS 107 A ILE 90 A ILE 116 A LEU 64 A LEU 89 A ILE 68 A ILE 93 A GLN 30 A GLN 45 A ARG 35 A ARG 50 A LEU 60 A LEU 76 A TYR 60 A TYR 77 A A LYS 60 A LYS 82 A ASN 60 A ASN 83 F G BINDING SITE FOR RESIDUE NA A 950 Software 5 BINDING SITE FOR RESIDUE NA A 951 Software 5 BINDING SITE FOR RESIDUE 00R A 380 Software 16 BINDING SITE FOR CHAIN I OF DECAPEPTIDE INHIBITOR Software 12 A LYS 169 A LYS 204 5 1_555 A THR 172 A THR 207 5 1_555 A PHE 204 A PHE 245 A 5 4_546 A HOH 494 F HOH 5 1_555 A HOH 497 F HOH 5 1_555 A ARG 221 A ARG 263 A 5 1_555 A LYS 224 A LYS 266 5 1_555 A HOH 459 F HOH 5 1_555 A HOH 460 F HOH 5 1_555 A HOH 530 F HOH 5 1_555 A HIS 57 A HIS 73 16 1_555 A TYR 60 A TYR 77 A 16 1_555 A TRP 60 A TRP 80 D 16 1_555 A GLU 97 A GLU 124 A 16 1_555 A LEU 99 A LEU 126 16 1_555 A ILE 174 A ILE 209 16 1_555 A ASP 189 A ASP 229 16 1_555 A SER 195 A SER 235 16 1_555 A SER 214 A SER 256 16 1_555 A TRP 215 A TRP 257 16 1_555 A GLY 216 A GLY 258 16 1_555 A GLU 217 A GLU 259 16 1_555 A GLY 219 A GLY 260 16 1_555 A TYR 225 A TYR 267 16 1_555 A GLY 226 A GLY 268 16 1_555 A HOH 426 F HOH 16 1_555 A PHE 34 A PHE 49 12 1_555 A GLN 38 A GLN 54 12 1_555 A LEU 65 A LEU 90 12 1_555 A ARG 73 A ARG 98 12 1_555 A THR 74 A THR 99 12 1_555 A ARG 75 A ARG 100 12 2_555 A ARG 75 A ARG 100 12 1_555 A TYR 76 A TYR 101 12 1_555 A ILE 82 A ILE 108 12 1_555 A GLN 151 A GLN 186 12 1_555 A HOH 473 F HOH 12 1_555 I HOH 499 G HOH 12 1_555 5 C 1 2 1