0.039246
0.000000
0.000000
0.000000
0.023901
0.000000
0.000000
0.000000
0.015406
0.00000
0.00000
0.00000
Leonard, G.A.
Guy, A.
Brown, T.
Teoule, R.
Hunter, W.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.480
41.840
64.910
C10 H14 N5 O7 P
347.221
n
8-OXY DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
O
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
Y
50
N
N
Y
51
N
C
Y
52
N
N
Y
53
N
C
Y
54
N
C
N
55
N
N
Y
56
N
N
Y
57
N
C
Y
58
N
N
Y
59
N
C
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
N
86
N
N
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
N
Y
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
Y
30
N
doub
Y
31
N
sing
N
32
N
sing
Y
33
N
sing
N
34
N
sing
N
35
N
sing
Y
36
N
doub
Y
37
N
sing
N
38
N
sing
Y
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
doub
N
72
N
sing
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
sing
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
31
8415
8420
10.1021/bi00151a004
1390625
Conformation of guanine-8-oxoadenine base pairs in the crystal structure of d(CGCGAATT(O8A)GCG).
1992
10.2210/pdb1d75/pdb
pdb_00001d75
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
297.00
1
DIFFRACTOMETER
RIGAKU AFC-5
x-ray
1
1.0
ROTATING ANODE
3703.416
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(A38)P*GP*CP*G)-3')
2
syn
polymer
18.015
water
67
nat
water
no
yes
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(A38)(DG)(DC)(DG)
CGCGAATTAGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2.34
47.34
VAPOR DIFFUSION, SITTING DROP
7.40
pH 7.40, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
277.00
WATER
1
MPD
1
NA CACODYLATE
1
MG ACETATE
1
SPERMINE
1
1.747
1
19
A
1
B
24
-3.658
A_DC1:DG24_B
1
-12.489
0.121
0.578
-0.407
5.502
1
19
A
2
B
23
-1.270
A_DG2:DC23_B
2
-11.660
-0.281
0.828
-0.481
-12.730
1
19
A
3
B
22
-7.534
A_DC3:DG22_B
3
-8.864
-0.243
0.499
-0.356
-9.203
9
A
4
B
21
-101.283
A_DG4:A3821_B
4
-9.088
-2.176
0.117
5.126
5.333
1
20
A
5
B
20
-0.842
A_DA5:DT20_B
5
-20.897
-0.266
0.159
-0.498
-1.554
1
20
A
6
B
19
-1.882
A_DA6:DT19_B
6
-31.622
-0.399
0.195
-0.641
-5.433
1
20
A
7
B
18
-0.597
A_DT7:DA18_B
7
-18.067
-0.007
0.024
-0.405
-9.594
1
20
A
8
B
17
0.652
A_DT8:DA17_B
8
-23.171
0.146
0.398
-0.577
7.002
9
A
9
B
16
88.631
A_A389:DG16_B
9
10.150
1.720
-0.262
-5.619
13.804
1
19
A
10
B
15
-2.851
A_DG10:DC15_B
10
-6.588
0.410
0.118
-0.387
-0.030
1
19
A
11
B
14
-11.546
A_DC11:DG14_B
11
-22.516
0.405
0.966
-0.799
2.816
1
19
A
12
B
13
-3.450
A_DG12:DC13_B
12
-1.218
-0.683
0.386
-0.591
2.943
41.017
A
A
1
2
9.013
B
B
24
23
3.055
6.287
-0.056
-0.511
AA_DC1DG2:DC23DG24_BB
1
-3.162
4.533
40.435
-1.362
-0.239
3.783
36.749
A
A
2
3
-22.167
B
B
23
22
4.007
-13.640
-0.081
-0.200
AA_DG2DC3:DG22DC23_BB
2
3.565
-5.794
34.023
1.992
0.731
2.734
65.622
A
A
3
4
5.664
B
B
22
21
2.751
6.123
1.370
-1.445
AA_DC3DG4:A3821DG22_BB
3
6.698
-6.196
65.062
-1.545
-1.034
3.949
7.496
A
A
4
5
44.758
B
B
21
20
3.414
5.173
-0.309
2.324
AA_DG4DA5:DT20A3821_BB
4
-2.228
19.279
4.948
-5.618
-7.712
3.275
33.100
A
A
5
6
6.977
B
B
20
19
3.382
3.961
0.236
-0.440
AA_DA5DA6:DT19DT20_BB
5
-2.872
5.059
32.747
-1.456
-0.911
3.432
33.286
A
A
6
7
-15.065
B
B
19
18
3.420
-8.536
0.014
-0.497
AA_DA6DT7:DA18DT19_BB
6
-1.366
2.412
32.175
0.650
-0.268
3.402
42.889
A
A
7
8
1.630
B
B
18
17
3.411
1.192
-0.198
-0.035
AA_DT7DT8:DA17DA18_BB
7
1.234
-1.688
42.857
-0.171
0.399
0.002
176.428
A
A
8
9
-2.742
B
B
17
16
2.550
-5.378
0.163
-3.200
AA_DT8A389:DG16DA17_BB
8
-176.344
89.911
3.048
-1.563
-1.324
-1.384
178.039
A
A
9
10
-45.962
B
B
16
15
-2.600
-91.502
-1.012
-2.901
AA_A389DG10:DC15DG16_BB
9
151.790
-76.244
89.583
-1.879
-0.204
3.248
38.898
A
A
10
11
-20.542
B
B
15
14
3.762
-13.356
-0.164
0.827
AA_DG10DC11:DG14DC15_BB
10
-6.554
10.080
36.043
3.053
-0.643
3.475
37.148
A
A
11
12
2.181
B
B
14
13
3.523
1.385
-0.151
0.150
AA_DC11DG12:DC13DG14_BB
11
5.135
-8.087
36.779
0.037
0.973
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1993-01-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
BNL
Y
NDB
1992-05-07
REL
HOH
water
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
28
2
HOH
HOH
28
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
46
2
HOH
HOH
46
A
HOH
48
2
HOH
HOH
48
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
56
2
HOH
HOH
56
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
61
2
HOH
HOH
61
A
HOH
62
2
HOH
HOH
62
A
HOH
63
2
HOH
HOH
63
A
HOH
64
2
HOH
HOH
64
A
HOH
65
2
HOH
HOH
65
A
HOH
72
2
HOH
HOH
72
A
HOH
74
2
HOH
HOH
74
A
HOH
77
2
HOH
HOH
77
A
HOH
78
2
HOH
HOH
78
A
HOH
79
2
HOH
HOH
79
A
HOH
80
2
HOH
HOH
80
A
HOH
84
2
HOH
HOH
84
A
HOH
86
2
HOH
HOH
86
A
HOH
87
2
HOH
HOH
87
A
HOH
88
2
HOH
HOH
88
A
HOH
89
2
HOH
HOH
89
A
HOH
90
2
HOH
HOH
90
A
HOH
91
2
HOH
HOH
91
A
HOH
27
2
HOH
HOH
27
B
HOH
29
2
HOH
HOH
29
B
HOH
30
2
HOH
HOH
30
B
HOH
34
2
HOH
HOH
34
B
HOH
39
2
HOH
HOH
39
B
HOH
45
2
HOH
HOH
45
B
HOH
47
2
HOH
HOH
47
B
HOH
49
2
HOH
HOH
49
B
HOH
53
2
HOH
HOH
53
B
HOH
57
2
HOH
HOH
57
B
HOH
58
2
HOH
HOH
58
B
HOH
66
2
HOH
HOH
66
B
HOH
67
2
HOH
HOH
67
B
HOH
68
2
HOH
HOH
68
B
HOH
69
2
HOH
HOH
69
B
HOH
70
2
HOH
HOH
70
B
HOH
71
2
HOH
HOH
71
B
HOH
73
2
HOH
HOH
73
B
HOH
75
2
HOH
HOH
75
B
HOH
76
2
HOH
HOH
76
B
HOH
81
2
HOH
HOH
81
B
HOH
82
2
HOH
HOH
82
B
HOH
83
2
HOH
HOH
83
B
HOH
85
2
HOH
HOH
85
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
+A
9
n
9
A38
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
+A
21
n
9
A38
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
A38
9
8-OXY DEOXYADENOSINE-5'-MONOPHOSPHATE
A
A38
9
DA
B
A38
21
8-OXY DEOXYADENOSINE-5'-MONOPHOSPHATE
B
A38
9
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-2.90
0.40
104.50
101.60
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
-6.20
1.00
110.10
103.90
A
A
A
C1'
O4'
C4'
DG
DG
DG
2
2
2
N
1
2.30
0.30
108.30
110.60
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-3.61
0.60
125.10
121.49
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
3.56
0.50
111.50
115.06
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
5.18
0.30
108.30
113.48
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
7.81
1.20
119.70
127.51
A
A
A
C3'
O3'
P
DC
DC
DG
3
3
4
Y
1
-8.41
1.00
110.10
101.69
A
A
A
C1'
O4'
C4'
DG
DG
DG
4
4
4
N
1
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.18
0.50
111.50
114.68
A
A
A
C5
C6
N1
DG
DG
DG
4
4
4
N
1
-5.44
0.80
109.40
103.96
A
A
A
O5'
C5'
C4'
DA
DA
DA
5
5
5
N
1
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
3.73
0.60
118.60
122.33
A
A
A
C6
N1
C2
DA
DA
DA
5
5
5
N
1
-3.79
0.50
129.30
125.51
A
A
A
N1
C2
N3
DA
DA
DA
5
5
5
N
1
-6.98
1.00
110.10
103.12
A
A
A
C1'
O4'
C4'
DA
DA
DA
6
6
6
N
1
3.73
0.60
118.60
122.33
A
A
A
C6
N1
C2
DA
DA
DA
6
6
6
N
1
-3.46
0.50
129.30
125.84
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
1
-3.23
0.50
117.70
114.47
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
1
-5.02
0.80
109.40
104.38
A
A
A
O5'
C5'
C4'
DT
DT
DT
7
7
7
N
1
-6.66
1.00
110.10
103.44
A
A
A
C1'
O4'
C4'
DT
DT
DT
7
7
7
N
1
4.71
0.30
108.30
113.01
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
-4.86
0.60
127.20
122.34
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
3.63
0.60
115.20
118.83
A
A
A
N3
C4
C5
DT
DT
DT
7
7
7
N
1
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-3.94
0.60
127.20
123.26
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
-3.70
0.60
119.90
116.20
A
A
A
N3
C4
O4
DT
DT
DT
8
8
8
N
1
-3.59
0.40
104.50
100.91
A
A
A
O4'
C4'
C3'
DG
DG
DG
10
10
10
N
1
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-3.65
0.60
125.10
121.45
A
A
A
C6
N1
C2
DG
DG
DG
10
10
10
N
1
3.17
0.50
111.50
114.67
A
A
A
C5
C6
N1
DG
DG
DG
10
10
10
N
1
-6.88
1.00
110.10
103.22
A
A
A
C1'
O4'
C4'
DC
DC
DC
11
11
11
N
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
4.36
0.30
108.30
112.66
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-3.87
0.60
125.10
121.23
A
A
A
C6
N1
C2
DG
DG
DG
12
12
12
N
1
3.95
0.50
111.50
115.45
A
A
A
C5
C6
N1
DG
DG
DG
12
12
12
N
1
6.21
0.30
108.30
114.51
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
4.22
0.70
118.00
122.22
B
B
B
N3
C4
N4
DC
DC
DC
13
13
13
N
1
4.34
0.30
108.30
112.64
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
-2.68
0.40
104.50
101.82
B
B
B
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
1
4.56
0.30
108.30
112.86
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
6.13
0.30
108.30
114.43
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
3.11
0.50
111.50
114.61
B
B
B
C5
C6
N1
DG
DG
DG
16
16
16
N
1
3.68
0.60
118.60
122.28
B
B
B
C6
N1
C2
DA
DA
DA
17
17
17
N
1
-3.37
0.50
129.30
125.93
B
B
B
N1
C2
N3
DA
DA
DA
17
17
17
N
1
-3.13
0.50
117.70
114.57
B
B
B
C5
C6
N1
DA
DA
DA
17
17
17
N
1
2.80
0.30
108.30
111.10
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
1
-3.19
0.50
129.30
126.11
B
B
B
N1
C2
N3
DA
DA
DA
18
18
18
N
1
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
-4.15
0.60
127.20
123.05
B
B
B
C2
N3
C4
DT
DT
DT
19
19
19
N
1
3.85
0.60
115.20
119.05
B
B
B
N3
C4
C5
DT
DT
DT
19
19
19
N
1
4.77
0.30
108.30
113.07
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
1
-4.33
0.60
127.20
122.87
B
B
B
C2
N3
C4
DT
DT
DT
20
20
20
N
1
11.49
1.20
119.70
131.19
B
B
B
C3'
O3'
P
A38
A38
DG
21
21
22
Y
1
-5.10
0.80
102.40
97.30
B
B
B
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
8.33
0.30
108.30
116.63
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
-3.73
0.60
125.10
121.37
B
B
B
C6
N1
C2
DG
DG
DG
22
22
22
N
1
3.59
0.50
111.50
115.09
B
B
B
C5
C6
N1
DG
DG
DG
22
22
22
N
1
7.07
0.30
108.30
115.37
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
1
3.45
0.30
108.30
111.75
B
B
B
O4'
C1'
N9
DG
DG
DG
24
24
24
N
1
-3.81
0.60
125.10
121.29
B
B
B
C6
N1
C2
DG
DG
DG
24
24
24
N
1
3.67
0.50
111.50
115.17
B
B
B
C5
C6
N1
DG
DG
DG
24
24
24
N
0.151
2.800
7.000
1119
1
2.000
TR
isotropic
TR
isotropic
2.800
7.000
67
559
2
490
0
0.009
0.022
0.006
0.016
fix
fix
2.200
1D75
5624
3485
5.000
1
refinement
NUCLSQ
CONFORMATION OF THE GUANINE.8-OXOADENINE BASE PAIRS IN THE CRYSTAL STRUCTURE OF D(CGCGAATT(O8A)GCG)
1
N
N
1
N
N
2
N
N
2
N
N
covale
1.607
both
A
DT
8
A
O3'
DT
8
1_555
A
A38
9
A
P
A38
9
1_555
covale
1.600
one
A
A38
9
A
O3'
A38
9
1_555
A
DG
10
A
P
DG
10
1_555
covale
1.606
both
B
DT
20
B
O3'
DT
8
1_555
B
A38
21
B
P
A38
9
1_555
covale
1.597
one
B
A38
21
B
O3'
A38
9
1_555
B
DG
22
B
P
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
TYPE_9_PAIR
A
DG
4
A
N1
DG
4
1_555
B
A38
21
B
N7
A38
9
1_555
hydrog
TYPE_9_PAIR
A
DG
4
A
O6
DG
4
1_555
B
A38
21
B
N6
A38
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
TYPE_9_PAIR
A
A38
9
A
N6
A38
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
TYPE_9_PAIR
A
A38
9
A
N7
A38
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, MODIFIED, MISMATCHED, DNA
1D75
PDB
1
1D75
1
12
1D75
1
12
1D75
A
1
1
12
13
24
1D75
13
24
1D75
B
1
1
12
19
P 21 21 21