0.031073 0.017940 0.000000 0.000000 0.035880 0.000000 0.000000 0.000000 0.012737 0.00000 0.00000 0.00000 Thota, N. Li, X.H. Bingman, C.A. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 32.182 32.182 78.511 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 49 282 291 10.1107/S0907444992007522 15299533 High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A. 1993 US Biochemistry BICHAW 0033 0006-2960 30 3567 3576 Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure: Correlated Variations in Helical Parameters 1991 10.2210/pdb1d78/pdb pdb_00001d78 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 258.00 1 AREA DETECTOR XENTRONICS x-ray 1 1.0 2426.617 DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') 1 syn polymer 18.015 water 37 nat water no no (DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC) GTGTACAC A polydeoxyribonucleotide n n n n n n n n 2.42 49.14 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 283.00K 283.00 WATER 1 MPD 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 MGCL2 2 -14.499 1 19 A 1 A 8 -0.598 A_DG1:DC8_A 1 -18.103 -0.256 -0.202 -0.154 -18.817 1 20 A 2 A 7 -2.455 A_DT2:DA7_A 2 -8.337 -0.068 -0.005 -0.105 -8.749 1 19 A 3 A 6 0.367 A_DG3:DC6_A 3 -12.039 -0.145 0.099 -0.124 -1.210 1 20 A 4 A 5 -1.731 A_DT4:DA5_A 4 -13.329 -0.042 0.232 -0.146 1.210 1 20 A 5 A 4 -1.731 A_DA5:DT4_A 5 -13.329 0.042 0.232 -0.146 8.749 1 19 A 6 A 3 0.367 A_DC6:DG3_A 6 -12.039 0.145 0.099 -0.124 18.817 1 20 A 7 A 2 -2.455 A_DA7:DT2_A 7 -8.337 0.068 -0.005 -0.105 14.499 1 19 A 8 A 1 -0.598 A_DC8:DG1_A 8 -18.103 0.256 -0.202 -0.154 3.382 35.989 A A 1 2 -0.553 A A 8 7 3.396 -0.341 -0.587 -1.362 AA_DG1DT2:DA7DC8_AA 1 1.491 -2.413 35.958 -2.153 1.169 2.503 31.232 A A 2 3 22.548 A A 7 6 3.138 11.841 0.665 -0.972 AA_DT2DG3:DC6DA7_AA 2 -2.069 3.940 28.879 -3.824 -1.589 2.929 32.880 A A 3 4 10.268 A A 6 5 3.154 5.781 -0.530 -1.185 AA_DG3DT4:DA5DC6_AA 3 -1.803 3.203 32.333 -3.021 0.648 2.433 34.737 A A 4 5 23.543 A A 5 4 3.100 13.697 0.000 -1.118 AA_DT4DA5:DT4DA5_AA 4 0.000 0.000 32.000 -3.723 0.000 2.929 32.880 A A 5 6 10.268 A A 4 3 3.154 5.781 0.530 -1.185 AA_DA5DC6:DG3DT4_AA 5 1.803 -3.203 32.333 -3.021 -0.648 2.503 31.232 A A 6 7 22.548 A A 3 2 3.138 11.841 -0.666 -0.972 AA_DC6DA7:DT2DG3_AA 6 2.069 -3.940 28.879 -3.824 1.589 3.382 35.989 A A 7 8 -0.553 A A 2 1 3.396 -0.341 0.587 -1.362 AA_DA7DC8:DG1DT2_AA 7 -1.491 2.413 35.958 -2.153 -1.169 audit_author citation_author database_2 repository Initial release Version format compliance Version format compliance Database references Structure summary 1 0 1993-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-03-22 _audit_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-06-12 REL REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A G 1 n 1 DG 1 A T 2 n 2 DT 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_555 x,x-y,-z+1/6 crystal symmetry operation 0.0000000000 0.0000000000 13.0851666667 1 A A OP1 O DT HOH 2 34 1.46 1 A A C5' O DT HOH 2 34 1.68 1 A A O5' O DT HOH 2 34 1.76 1 A A P O DT HOH 2 34 1.77 1 8.84 1.20 110.70 119.54 A A A O5' P OP2 DT DT DT 2 2 2 N 1 -5.64 0.80 123.10 117.46 A A A N1 C2 O2 DT DT DT 2 2 2 N 1 -4.33 0.70 124.90 120.57 A A A C5 C4 O4 DT DT DT 2 2 2 N 1 8.82 1.10 110.50 119.32 A A A O3' P OP2 DT DG DG 2 3 3 Y 1 -6.21 0.80 109.40 103.19 A A A O5' C5' C4' DG DG DG 3 3 3 N 1 -4.25 0.70 119.90 115.65 A A A N3 C2 N2 DG DG DG 3 3 3 N 1 -6.65 0.80 109.40 102.75 A A A O5' C5' C4' DT DT DT 4 4 4 N 1 2.45 0.30 108.30 110.75 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 3.61 0.60 114.60 118.21 A A A N1 C2 N3 DT DT DT 4 4 4 N 1 -4.00 0.60 127.20 123.20 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 3.84 0.60 118.60 122.44 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -4.95 0.50 129.30 124.35 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 4.98 0.60 118.60 123.58 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -3.79 0.50 129.30 125.51 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 -3.77 0.50 117.70 113.93 A A A C5 C6 N1 DA DA DA 7 7 7 N 1 -2.59 0.40 121.90 119.31 A A A N3 C4 C5 DC DC DC 8 8 8 N 1 A A P O5' DG DG 3 3 0.061 0.010 1.593 1.654 N 1 A A P O5' DC DC 6 6 -0.064 0.010 1.593 1.529 N 1 A A P O5' DC DC 8 8 0.067 0.010 1.593 1.660 N 0.1980000 1.400 5.000 4365 1 2.000 TR isotropic TR isotropic 1.400 5.000 37 198 0 161 0 fix fix 1.400 5.000 1D78 7730 4365 2.000 1 refinement NUCLSQ HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 12_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 12_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 12_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 12_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 12_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 6 A N3 DC 6 12_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 6 A O2 DC 6 12_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 6 A N4 DC 6 12_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 5 A N1 DA 5 12_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 5 A N6 DA 5 12_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 4 A N3 DT 4 12_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 4 A O4 DT 4 12_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 3 A N1 DG 3 12_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 3 A O6 DG 3 12_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 3 A N2 DG 3 12_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 12_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 12_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 12_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 12_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 12_555 DNA A-DNA, DOUBLE HELIX, DNA 1D78 PDB 1 1D78 1 8 1D78 1 8 1D78 A 1 1 8 178 P 61 2 2