0.031073
0.017940
0.000000
0.000000
0.035880
0.000000
0.000000
0.000000
0.012737
0.00000
0.00000
0.00000
Thota, N.
Li, X.H.
Bingman, C.A.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
32.182
32.182
78.511
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
49
282
291
10.1107/S0907444992007522
15299533
High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.
1993
US
Biochemistry
BICHAW
0033
0006-2960
30
3567
3576
Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure: Correlated Variations in Helical Parameters
1991
10.2210/pdb1d78/pdb
pdb_00001d78
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
258.00
1
AREA DETECTOR
XENTRONICS
x-ray
1
1.0
2426.617
DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
1
syn
polymer
18.015
water
37
nat
water
no
no
(DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC)
GTGTACAC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.42
49.14
VAPOR DIFFUSION
VAPOR DIFFUSION, temperature 283.00K
283.00
WATER
1
MPD
1
MGCL2
1
SPERMINE
1
WATER
2
MPD
2
MGCL2
2
-14.499
1
19
A
1
A
8
-0.598
A_DG1:DC8_A
1
-18.103
-0.256
-0.202
-0.154
-18.817
1
20
A
2
A
7
-2.455
A_DT2:DA7_A
2
-8.337
-0.068
-0.005
-0.105
-8.749
1
19
A
3
A
6
0.367
A_DG3:DC6_A
3
-12.039
-0.145
0.099
-0.124
-1.210
1
20
A
4
A
5
-1.731
A_DT4:DA5_A
4
-13.329
-0.042
0.232
-0.146
1.210
1
20
A
5
A
4
-1.731
A_DA5:DT4_A
5
-13.329
0.042
0.232
-0.146
8.749
1
19
A
6
A
3
0.367
A_DC6:DG3_A
6
-12.039
0.145
0.099
-0.124
18.817
1
20
A
7
A
2
-2.455
A_DA7:DT2_A
7
-8.337
0.068
-0.005
-0.105
14.499
1
19
A
8
A
1
-0.598
A_DC8:DG1_A
8
-18.103
0.256
-0.202
-0.154
3.382
35.989
A
A
1
2
-0.553
A
A
8
7
3.396
-0.341
-0.587
-1.362
AA_DG1DT2:DA7DC8_AA
1
1.491
-2.413
35.958
-2.153
1.169
2.503
31.232
A
A
2
3
22.548
A
A
7
6
3.138
11.841
0.665
-0.972
AA_DT2DG3:DC6DA7_AA
2
-2.069
3.940
28.879
-3.824
-1.589
2.929
32.880
A
A
3
4
10.268
A
A
6
5
3.154
5.781
-0.530
-1.185
AA_DG3DT4:DA5DC6_AA
3
-1.803
3.203
32.333
-3.021
0.648
2.433
34.737
A
A
4
5
23.543
A
A
5
4
3.100
13.697
0.000
-1.118
AA_DT4DA5:DT4DA5_AA
4
0.000
0.000
32.000
-3.723
0.000
2.929
32.880
A
A
5
6
10.268
A
A
4
3
3.154
5.781
0.530
-1.185
AA_DA5DC6:DG3DT4_AA
5
1.803
-3.203
32.333
-3.021
-0.648
2.503
31.232
A
A
6
7
22.548
A
A
3
2
3.138
11.841
-0.666
-0.972
AA_DC6DA7:DT2DG3_AA
6
2.069
-3.940
28.879
-3.824
1.589
3.382
35.989
A
A
7
8
-0.553
A
A
2
1
3.396
-0.341
0.587
-1.362
AA_DA7DC8:DG1DT2_AA
7
-1.491
2.413
35.958
-2.153
-1.169
audit_author
citation_author
database_2
repository
Initial release
Version format compliance
Version format compliance
Database references
Structure summary
1
0
1993-04-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-03-22
_audit_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1992-06-12
REL
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
T
4
n
4
DT
4
A
A
5
n
5
DA
5
A
C
6
n
6
DC
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
13.0851666667
1
A
A
OP1
O
DT
HOH
2
34
1.46
1
A
A
C5'
O
DT
HOH
2
34
1.68
1
A
A
O5'
O
DT
HOH
2
34
1.76
1
A
A
P
O
DT
HOH
2
34
1.77
1
8.84
1.20
110.70
119.54
A
A
A
O5'
P
OP2
DT
DT
DT
2
2
2
N
1
-5.64
0.80
123.10
117.46
A
A
A
N1
C2
O2
DT
DT
DT
2
2
2
N
1
-4.33
0.70
124.90
120.57
A
A
A
C5
C4
O4
DT
DT
DT
2
2
2
N
1
8.82
1.10
110.50
119.32
A
A
A
O3'
P
OP2
DT
DG
DG
2
3
3
Y
1
-6.21
0.80
109.40
103.19
A
A
A
O5'
C5'
C4'
DG
DG
DG
3
3
3
N
1
-4.25
0.70
119.90
115.65
A
A
A
N3
C2
N2
DG
DG
DG
3
3
3
N
1
-6.65
0.80
109.40
102.75
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
3.61
0.60
114.60
118.21
A
A
A
N1
C2
N3
DT
DT
DT
4
4
4
N
1
-4.00
0.60
127.20
123.20
A
A
A
C2
N3
C4
DT
DT
DT
4
4
4
N
1
3.84
0.60
118.60
122.44
A
A
A
C6
N1
C2
DA
DA
DA
5
5
5
N
1
-4.95
0.50
129.30
124.35
A
A
A
N1
C2
N3
DA
DA
DA
5
5
5
N
1
4.98
0.60
118.60
123.58
A
A
A
C6
N1
C2
DA
DA
DA
7
7
7
N
1
-3.79
0.50
129.30
125.51
A
A
A
N1
C2
N3
DA
DA
DA
7
7
7
N
1
-3.77
0.50
117.70
113.93
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
1
-2.59
0.40
121.90
119.31
A
A
A
N3
C4
C5
DC
DC
DC
8
8
8
N
1
A
A
P
O5'
DG
DG
3
3
0.061
0.010
1.593
1.654
N
1
A
A
P
O5'
DC
DC
6
6
-0.064
0.010
1.593
1.529
N
1
A
A
P
O5'
DC
DC
8
8
0.067
0.010
1.593
1.660
N
0.1980000
1.400
5.000
4365
1
2.000
TR
isotropic
TR
isotropic
1.400
5.000
37
198
0
161
0
fix
fix
1.400
5.000
1D78
7730
4365
2.000
1
refinement
NUCLSQ
HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
12_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
12_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
12_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
A
DA
7
A
N1
DA
7
12_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
A
DA
7
A
N6
DA
7
12_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
A
DC
6
A
N3
DC
6
12_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
A
DC
6
A
O2
DC
6
12_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
A
DC
6
A
N4
DC
6
12_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
5
A
N1
DA
5
12_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
5
A
N6
DA
5
12_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
A
DT
4
A
N3
DT
4
12_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
A
DT
4
A
O4
DT
4
12_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
A
DG
3
A
N1
DG
3
12_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
A
DG
3
A
O6
DG
3
12_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
A
DG
3
A
N2
DG
3
12_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
A
DT
2
A
N3
DT
2
12_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
A
DT
2
A
O4
DT
2
12_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
12_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
12_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
12_555
DNA
A-DNA, DOUBLE HELIX, DNA
1D78
PDB
1
1D78
1
8
1D78
1
8
1D78
A
1
1
8
178
P 61 2 2