21.43 15.381 2.129 9.921 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 17.39 14.197 1.574 10.541 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 16.30 14.349 1.865 12.025 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 15.87 15.492 1.201 12.519 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 13.82 14.558 3.330 12.378 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 15.74 13.310 4.025 12.464 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 15.19 15.261 3.254 13.728 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 17.48 16.120 2.019 13.532 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 14.03 17.477 2.319 13.029 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 17.80 18.002 1.874 11.836 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 15.61 19.246 2.246 11.656 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 14.57 19.532 3.016 12.778 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 17.74 20.715 3.705 13.171 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 18.17 21.786 3.739 12.558 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 14.63 20.604 4.330 14.379 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 15.03 19.474 4.327 15.133 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 13.64 19.496 4.988 16.295 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 13.88 18.350 3.680 14.827 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 13.37 18.453 3.075 13.634 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 17.80 13.200 5.621 12.182 A P DT 2 ATOM A P DT 1 2 1.00 1 P 19.94 11.697 5.915 12.331 A OP1 DT 2 ATOM A OP1 DT 1 2 1.00 1 O 15.73 13.719 5.786 10.824 A OP2 DT 2 ATOM A OP2 DT 1 2 1.00 1 O 17.84 13.895 6.411 13.335 A O5' DT 2 ATOM A O5' DT 1 2 1.00 1 O 16.14 13.479 6.386 14.725 A C5' DT 2 ATOM A C5' DT 1 2 1.00 1 C 15.65 14.479 7.276 15.423 A C4' DT 2 ATOM A C4' DT 1 2 1.00 1 C 16.91 15.722 6.607 15.463 A O4' DT 2 ATOM A O4' DT 1 2 1.00 1 O 20.48 14.818 8.609 14.772 A C3' DT 2 ATOM A C3' DT 1 2 1.00 1 C 26.76 13.829 9.612 15.023 A O3' DT 2 ATOM A O3' DT 1 2 1.00 1 O 16.55 16.164 8.945 15.400 A C2' DT 2 ATOM A C2' DT 1 2 1.00 1 C 16.33 16.796 7.576 15.502 A C1' DT 2 ATOM A C1' DT 1 2 1.00 1 C 13.58 17.695 7.324 14.356 A N1 DT 2 ATOM A N1 DT 1 2 1.00 1 N 15.20 18.992 7.817 14.489 A C2 DT 2 ATOM A C2 DT 1 2 1.00 1 C 16.01 19.312 8.405 15.517 A O2 DT 2 ATOM A O2 DT 1 2 1.00 1 O 13.24 19.836 7.554 13.453 A N3 DT 2 ATOM A N3 DT 1 2 1.00 1 N 14.97 19.452 6.884 12.339 A C4 DT 2 ATOM A C4 DT 1 2 1.00 1 C 16.54 20.305 6.685 11.428 A O4 DT 2 ATOM A O4 DT 1 2 1.00 1 O 13.32 18.107 6.414 12.205 A C5 DT 2 ATOM A C5 DT 1 2 1.00 1 C 16.00 17.690 5.685 10.957 A C7 DT 2 ATOM A C7 DT 1 2 1.00 1 C 12.41 17.292 6.660 13.233 A C6 DT 2 ATOM A C6 DT 1 2 1.00 1 C 26.00 13.743 10.797 13.987 A P DG 3 ATOM A P DG 1 3 1.00 1 P 30.70 12.559 11.497 14.568 A OP1 DG 3 ATOM A OP1 DG 1 3 1.00 1 O 19.08 13.851 10.553 12.535 A OP2 DG 3 ATOM A OP2 DG 1 3 1.00 1 O 25.70 15.077 11.769 14.167 A O5' DG 3 ATOM A O5' DG 1 3 1.00 1 O 20.70 15.232 12.502 15.400 A C5' DG 3 ATOM A C5' DG 1 3 1.00 1 C 18.52 16.692 12.897 15.423 A C4' DG 3 ATOM A C4' DG 1 3 1.00 1 C 16.50 17.496 11.746 15.227 A O4' DG 3 ATOM A O4' DG 1 3 1.00 1 O 16.29 17.160 13.852 14.332 A C3' DG 3 ATOM A C3' DG 1 3 1.00 1 C 20.59 16.742 15.191 14.607 A O3' DG 3 ATOM A O3' DG 1 3 1.00 1 O 15.56 18.676 13.673 14.395 A C2' DG 3 ATOM A C2' DG 1 3 1.00 1 C 16.17 18.759 12.180 14.670 A C1' DG 3 ATOM A C1' DG 1 3 1.00 1 C 14.76 18.998 11.430 13.430 A N9 DG 3 ATOM A N9 DG 1 3 1.00 1 N 12.87 18.130 10.688 12.668 A C8 DG 3 ATOM A C8 DG 1 3 1.00 1 C 14.00 18.681 10.130 11.624 A N7 DG 3 ATOM A N7 DG 1 3 1.00 1 N 11.53 20.018 10.525 11.711 A C5 DG 3 ATOM A C5 DG 1 3 1.00 1 C 12.94 21.144 10.189 10.918 A C6 DG 3 ATOM A C6 DG 1 3 1.00 1 C 13.86 21.155 9.508 9.890 A O6 DG 3 ATOM A O6 DG 1 3 1.00 1 O 11.64 22.300 10.819 11.326 A N1 DG 3 ATOM A N1 DG 1 3 1.00 1 N 13.71 22.386 11.567 12.456 A C2 DG 3 ATOM A C2 DG 1 3 1.00 1 C 12.35 23.582 12.099 12.762 A N2 DG 3 ATOM A N2 DG 1 3 1.00 1 N 13.66 21.367 11.892 13.257 A N3 DG 3 ATOM A N3 DG 1 3 1.00 1 N 13.41 20.224 11.323 12.810 A C4 DG 3 ATOM A C4 DG 1 3 1.00 1 C 18.80 16.715 16.348 13.626 A P DT 4 ATOM A P DT 1 4 1.00 1 P 25.95 16.092 17.589 14.317 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 16.25 16.240 16.079 12.284 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 16.95 18.300 16.768 13.359 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 18.55 19.152 17.381 14.356 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 17.74 20.521 17.479 13.720 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 18.08 21.078 16.191 13.540 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 16.96 20.529 18.104 12.331 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 21.88 20.428 19.535 12.346 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 16.20 21.868 17.611 11.789 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 17.88 21.915 16.202 12.362 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 16.56 21.437 15.222 11.373 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 17.06 22.376 14.681 10.510 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 17.07 23.548 15.059 10.533 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 15.25 21.931 13.771 9.591 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 14.73 20.626 13.359 9.529 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 14.77 20.324 12.516 8.642 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 13.62 19.680 13.945 10.416 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 13.81 18.225 13.536 10.353 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 17.14 20.122 14.833 11.310 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 20.89 20.014 20.308 11.004 A P DA 5 ATOM A P DA 1 5 1.00 1 P 29.41 19.782 21.717 11.530 A OP1 DA 5 ATOM A OP1 DA 1 5 1.00 1 O 22.53 18.720 19.742 10.431 A OP2 DA 5 ATOM A OP2 DA 1 5 1.00 1 O 18.58 21.110 20.258 9.905 A O5' DA 5 ATOM A O5' DA 1 5 1.00 1 O 15.60 22.391 20.863 10.243 A C5' DA 5 ATOM A C5' DA 1 5 1.00 1 C 17.24 23.388 20.412 9.207 A C4' DA 5 ATOM A C4' DA 1 5 1.00 1 C 15.39 23.602 19.017 9.317 A O4' DA 5 ATOM A O4' DA 1 5 1.00 1 O 16.98 22.974 20.641 7.763 A C3' DA 5 ATOM A C3' DA 1 5 1.00 1 C 19.51 23.201 21.980 7.323 A O3' DA 5 ATOM A O3' DA 1 5 1.00 1 O 17.64 23.852 19.653 7.001 A C2' DA 5 ATOM A C2' DA 1 5 1.00 1 C 15.14 23.878 18.504 7.990 A C1' DA 5 ATOM A C1' DA 1 5 1.00 1 C 14.54 22.856 17.502 7.629 A N9 DA 5 ATOM A N9 DA 1 5 1.00 1 N 18.11 21.593 17.359 8.147 A C8 DA 5 ATOM A C8 DA 1 5 1.00 1 C 16.98 20.939 16.337 7.645 A N7 DA 5 ATOM A N7 DA 1 5 1.00 1 N 15.07 21.851 15.771 6.758 A C5 DA 5 ATOM A C5 DA 1 5 1.00 1 C 14.05 21.768 14.642 5.902 A C6 DA 5 ATOM A C6 DA 1 5 1.00 1 C 16.71 20.678 13.875 5.808 A N6 DA 5 ATOM A N6 DA 1 5 1.00 1 N 16.32 22.876 14.382 5.149 A N1 DA 5 ATOM A N1 DA 1 5 1.00 1 N 19.43 24.004 15.138 5.212 A C2 DA 5 ATOM A C2 DA 1 5 1.00 1 C 16.26 24.127 16.208 5.997 A N3 DA 5 ATOM A N3 DA 1 5 1.00 1 N 15.63 23.044 16.465 6.742 A C4 DA 5 ATOM A C4 DA 1 5 1.00 1 C 17.96 22.263 22.585 6.201 A P DC 6 ATOM A P DC 1 6 1.00 1 P 22.92 22.656 24.117 6.264 A OP1 DC 6 ATOM A OP1 DC 1 6 1.00 1 O 16.85 20.880 22.319 6.593 A OP2 DC 6 ATOM A OP2 DC 1 6 1.00 1 O 15.12 22.703 22.036 4.811 A O5' DC 6 ATOM A O5' DC 1 6 1.00 1 O 16.33 24.071 22.176 4.356 A C5' DC 6 ATOM A C5' DC 1 6 1.00 1 C 18.47 24.350 21.137 3.297 A C4' DC 6 ATOM A C4' DC 1 6 1.00 1 C 15.70 24.213 19.846 3.862 A O4' DC 6 ATOM A O4' DC 1 6 1.00 1 O 20.26 23.413 21.115 2.096 A C3' DC 6 ATOM A C3' DC 1 6 1.00 1 C 20.92 23.665 22.157 1.154 A O3' DC 6 ATOM A O3' DC 1 6 1.00 1 O 15.76 23.694 19.714 1.538 A C2' DC 6 ATOM A C2' DC 1 6 1.00 1 C 15.37 23.799 18.927 2.826 A C1' DC 6 ATOM A C1' DC 1 6 1.00 1 C 14.68 22.520 18.303 3.249 A N1 DC 6 ATOM A N1 DC 1 6 1.00 1 N 15.84 22.269 17.040 2.716 A C2 DC 6 ATOM A C2 DC 1 6 1.00 1 C 14.63 23.037 16.544 1.892 A O2 DC 6 ATOM A O2 DC 1 6 1.00 1 O 14.09 21.087 16.437 3.053 A N3 DC 6 ATOM A N3 DC 1 6 1.00 1 N 15.41 20.225 16.984 3.956 A C4 DC 6 ATOM A C4 DC 1 6 1.00 1 C 13.25 19.111 16.309 4.262 A N4 DC 6 ATOM A N4 DC 1 6 1.00 1 N 13.07 20.513 18.266 4.505 A C5 DC 6 ATOM A C5 DC 1 6 1.00 1 C 13.31 21.658 18.866 4.144 A C6 DC 6 ATOM A C6 DC 1 6 1.00 1 C 19.10 22.636 22.722 0.078 A P DA 7 ATOM A P DA 1 7 1.00 1 P 22.74 23.230 24.086 -0.283 A OP1 DA 7 ATOM A OP1 DA 1 7 1.00 1 O 18.69 21.254 22.843 0.644 A OP2 DA 7 ATOM A OP2 DA 1 7 1.00 1 O 17.74 22.746 21.753 -1.154 A O5' DA 7 ATOM A O5' DA 1 7 1.00 1 O 18.64 24.008 21.272 -1.680 A C5' DA 7 ATOM A C5' DA 1 7 1.00 1 C 21.69 23.655 20.207 -2.700 A C4' DA 7 ATOM A C4' DA 1 7 1.00 1 C 18.36 23.037 19.132 -2.017 A O4' DA 7 ATOM A O4' DA 1 7 1.00 1 O 19.83 22.690 20.636 -3.791 A C3' DA 7 ATOM A C3' DA 1 7 1.00 1 C 25.87 23.073 20.129 -5.070 A O3' DA 7 ATOM A O3' DA 1 7 1.00 1 O 23.75 21.333 20.090 -3.344 A C2' DA 7 ATOM A C2' DA 1 7 1.00 1 C 18.94 21.749 18.838 -2.598 A C1' DA 7 ATOM A C1' DA 1 7 1.00 1 C 14.44 20.795 18.507 -1.523 A N9 DA 7 ATOM A N9 DA 1 7 1.00 1 N 15.91 20.432 19.291 -0.463 A C8 DA 7 ATOM A C8 DA 1 7 1.00 1 C 16.13 19.571 18.728 0.345 A N7 DA 7 ATOM A N7 DA 1 7 1.00 1 N 15.47 19.388 17.465 -0.212 A C5 DA 7 ATOM A C5 DA 1 7 1.00 1 C 13.92 18.532 16.404 0.173 A C6 DA 7 ATOM A C6 DA 1 7 1.00 1 C 14.09 17.774 16.423 1.264 A N6 DA 7 ATOM A N6 DA 1 7 1.00 1 N 14.26 18.615 15.303 -0.628 A N1 DA 7 ATOM A N1 DA 1 7 1.00 1 N 13.17 19.386 15.267 -1.750 A C2 DA 7 ATOM A C2 DA 1 7 1.00 1 C 14.85 20.191 16.241 -2.166 A N3 DA 7 ATOM A N3 DA 1 7 1.00 1 N 12.99 20.114 17.322 -1.366 A C4 DA 7 ATOM A C4 DA 1 7 1.00 1 C 34.17 22.319 20.521 -6.413 A P DC 8 ATOM A P DC 1 8 1.00 1 P 35.50 23.151 20.213 -7.559 A OP1 DC 8 ATOM A OP1 DC 1 8 1.00 1 O 34.30 21.736 21.885 -6.209 A OP2 DC 8 ATOM A OP2 DC 1 8 1.00 1 O 29.57 21.024 19.471 -6.413 A O5' DC 8 ATOM A O5' DC 1 8 1.00 1 O 24.94 21.375 18.123 -6.829 A C5' DC 8 ATOM A C5' DC 1 8 1.00 1 C 23.39 20.080 17.365 -6.695 A C4' DC 8 ATOM A C4' DC 1 8 1.00 1 C 21.26 19.752 17.328 -5.322 A O4' DC 8 ATOM A O4' DC 1 8 1.00 1 O 23.45 18.851 18.003 -7.331 A C3' DC 8 ATOM A C3' DC 1 8 1.00 1 C 34.13 18.697 17.726 -8.720 A O3' DC 8 ATOM A O3' DC 1 8 1.00 1 O 22.19 17.693 17.398 -6.538 A C2' DC 8 ATOM A C2' DC 1 8 1.00 1 C 17.92 18.355 16.947 -5.259 A C1' DC 8 ATOM A C1' DC 1 8 1.00 1 C 17.70 17.726 17.561 -4.074 A N1 DC 8 ATOM A N1 DC 1 8 1.00 1 N 15.10 16.841 16.746 -3.391 A C2 DC 8 ATOM A C2 DC 1 8 1.00 1 C 18.62 16.607 15.606 -3.783 A O2 DC 8 ATOM A O2 DC 1 8 1.00 1 O 15.64 16.257 17.230 -2.253 A N3 DC 8 ATOM A N3 DC 1 8 1.00 1 N 14.98 16.484 18.502 -1.821 A C4 DC 8 ATOM A C4 DC 1 8 1.00 1 C 14.59 15.895 18.933 -0.706 A N4 DC 8 ATOM A N4 DC 1 8 1.00 1 N 17.38 17.399 19.331 -2.535 A C5 DC 8 ATOM A C5 DC 1 8 1.00 1 C 14.89 17.963 18.829 -3.642 A C6 DC 8 ATOM A C6 DC 1 8 1.00 1 C 34.85 18.316 20.140 2.174 A O HOH 9 HETATM B O HOH 2 0.96 1 O 44.32 19.171 22.708 -1.078 A O HOH 10 HETATM B O HOH 2 1.00 1 O 32.75 14.773 4.532 8.909 A O HOH 11 HETATM B O HOH 2 0.99 1 O 55.36 15.103 12.105 10.500 A O HOH 12 HETATM B O HOH 2 0.82 1 O 27.44 14.764 8.536 10.547 A O HOH 13 HETATM B O HOH 2 0.95 1 O 27.97 17.248 17.448 10.154 A O HOH 14 HETATM B O HOH 2 0.96 1 O 26.62 17.225 9.213 9.723 A O HOH 15 HETATM B O HOH 2 1.00 1 O 26.38 22.295 13.387 15.423 A O HOH 16 HETATM B O HOH 2 0.97 1 O 50.61 20.457 24.475 10.139 A O HOH 17 HETATM B O HOH 2 0.94 1 O 41.91 20.247 24.340 2.376 A O HOH 18 HETATM B O HOH 2 0.92 1 O 51.76 23.264 26.570 7.438 A O HOH 19 HETATM B O HOH 2 1.00 1 O 49.38 24.106 10.940 -3.611 A O HOH 20 HETATM B O HOH 2 0.94 1 O 26.58 21.661 14.861 -4.081 A O HOH 21 HETATM B O HOH 2 1.00 1 O 36.56 17.470 18.322 6.216 A O HOH 22 HETATM B O HOH 2 0.85 1 O 53.87 19.603 8.988 8.077 A O HOH 23 HETATM B O HOH 2 0.96 1 O 30.26 18.175 11.321 7.912 A O HOH 24 HETATM B O HOH 2 0.96 1 O 32.42 19.087 21.886 4.040 A O HOH 25 HETATM B O HOH 2 1.00 1 O 37.96 16.906 2.535 17.040 A O HOH 26 HETATM B O HOH 2 1.00 1 O 26.14 18.224 16.378 7.690 A O HOH 27 HETATM B O HOH 2 0.94 1 O 38.73 17.166 14.194 6.758 A O HOH 28 HETATM B O HOH 2 0.85 1 O 46.79 16.713 18.748 3.493 A O HOH 29 HETATM B O HOH 2 0.91 1 O 29.11 26.503 17.745 4.825 A O HOH 30 HETATM B O HOH 2 0.89 1 O 51.07 10.690 7.385 15.806 A O HOH 31 HETATM B O HOH 2 0.68 1 O 36.98 9.723 6.886 13.537 A O HOH 32 HETATM B O HOH 2 0.87 1 O 52.65 10.295 9.408 12.590 A O HOH 33 HETATM B O HOH 2 1.00 1 O 28.23 27.398 20.462 4.743 A O HOH 34 HETATM B O HOH 2 0.97 1 O 34.91 16.775 21.683 0.133 A O HOH 35 HETATM B O HOH 2 0.93 1 O 49.21 17.674 14.972 -9.154 A O HOH 36 HETATM B O HOH 2 0.73 1 O 32.32 18.781 20.291 7.551 A O HOH 37 HETATM B O HOH 2 0.86 1 O 40.70 20.979 5.657 9.220 A O HOH 38 HETATM B O HOH 2 0.93 1 O 57.93 22.845 28.105 5.348 A O HOH 39 HETATM B O HOH 2 0.90 1 O 52.46 20.576 20.000 6.036 A O HOH 40 HETATM B O HOH 2 0.59 1 O 54.44 10.999 17.874 3.297 A O HOH 41 HETATM B O HOH 2 0.74 1 O 35.29 22.641 25.823 4.340 A O HOH 42 HETATM B O HOH 2 0.96 1 O 62.70 15.935 20.193 13.349 A O HOH 43 HETATM B O HOH 2 0.95 1 O 0.030921 0.017852 0.000000 0.000000 0.035605 0.000000 0.000000 0.000000 0.012740 0.00000 0.00000 0.00000 Thota, N. Li, X.H. Bingman, C.A. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 32.341 32.341 78.490 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 49 282 291 10.1107/S0907444992007522 15299533 High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A. 1993 US Biochemistry BICHAW 0033 0006-2960 30 3567 3576 Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure: Correlated Variations in Helical Parameters 1991 10.2210/pdb1d79/pdb pdb_00001d79 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 258.00 1 AREA DETECTOR XENTRONICS x-ray 1 1.0 2426.617 DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') 1 syn polymer 18.015 water 35 nat water no no (DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC) GTGTACAC A polydeoxyribonucleotide n n n n n n n n 2.44 49.62 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 283.00K 283.00 WATER 1 MPD 1 MGCL2 1 SPERMIDINE 1 WATER 2 MPD 2 MGCL2 2 -14.935 1 19 A 1 A 8 -0.365 A_DG1:DC8_A 1 -19.194 -0.303 -0.233 -0.179 -18.067 1 20 A 2 A 7 -3.144 A_DT2:DA7_A 2 -8.707 -0.004 -0.071 -0.125 -8.232 1 19 A 3 A 6 0.751 A_DG3:DC6_A 3 -13.305 -0.163 0.032 -0.166 -1.880 1 20 A 4 A 5 -2.352 A_DT4:DA5_A 4 -12.140 0.005 0.167 -0.223 1.888 1 20 A 5 A 4 -2.319 A_DA5:DT4_A 5 -12.144 -0.010 0.167 -0.219 8.219 1 19 A 6 A 3 0.779 A_DC6:DG3_A 6 -13.310 0.161 0.032 -0.157 18.026 1 20 A 7 A 2 -3.126 A_DA7:DT2_A 7 -8.691 0.008 -0.070 -0.120 14.908 1 19 A 8 A 1 -0.345 A_DC8:DG1_A 8 -19.151 0.308 -0.232 -0.179 3.407 36.196 A A 1 2 -2.191 A A 8 7 3.394 -1.361 -0.644 -1.347 AA_DG1DT2:DA7DC8_AA 1 1.737 -2.797 36.131 -1.969 1.291 2.442 31.517 A A 2 3 24.426 A A 7 6 3.150 12.887 0.690 -0.986 AA_DT2DG3:DC6DA7_AA 2 -2.030 3.847 28.752 -3.968 -1.610 2.954 33.406 A A 3 4 10.402 A A 6 5 3.177 5.947 -0.583 -1.150 AA_DG3DT4:DA5DC6_AA 3 -1.660 2.904 32.847 -2.930 0.754 2.445 33.485 A A 4 5 23.250 A A 5 4 3.112 13.059 -0.002 -1.138 AA_DT4DA5:DT4DA5_AA 4 -0.005 0.009 30.901 -3.882 0.002 2.953 33.387 A A 5 6 10.411 A A 4 3 3.176 5.949 0.575 -1.147 AA_DA5DC6:DG3DT4_AA 5 1.655 -2.897 32.827 -2.929 -0.742 2.441 31.514 A A 6 7 24.430 A A 3 2 3.148 12.888 -0.695 -0.982 AA_DC6DA7:DT2DG3_AA 6 2.027 -3.842 28.749 -3.961 1.619 3.404 36.194 A A 7 8 -2.190 A A 2 1 3.391 -1.360 0.643 -1.339 AA_DA7DC8:DG1DT2_AA 7 -1.737 2.798 36.129 -1.957 -1.288 audit_author citation_author database_2 repository Initial release Version format compliance Version format compliance Database references Structure summary 1 0 1993-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-03-22 _audit_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-06-12 REL REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A G 1 n 1 DG 1 A T 2 n 2 DT 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.4986097458 0.8652107365 0.0000000000 0.8684454431 -0.4986097458 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_555 x,x-y,-z+1/6 crystal symmetry operation 0.0000000000 0.0000000000 13.0821559393 1 7.37 1.20 110.70 118.07 A A A O5' P OP2 DT DT DT 2 2 2 N 1 -5.35 0.80 109.40 104.05 A A A O5' C5' C4' DT DT DT 2 2 2 N 1 -4.17 0.60 127.20 123.03 A A A C2 N3 C4 DT DT DT 2 2 2 N 1 5.17 0.60 115.20 120.37 A A A N3 C4 C5 DT DT DT 2 2 2 N 1 10.71 1.10 110.50 121.21 A A A O3' P OP2 DT DG DG 2 3 3 Y 1 -7.39 0.90 105.70 98.31 A A A O5' P OP2 DG DG DG 3 3 3 N 1 -4.96 0.80 109.40 104.44 A A A O5' C5' C4' DG DG DG 3 3 3 N 1 7.09 1.10 110.50 117.59 A A A O3' P OP2 DG DT DT 3 4 4 Y 1 2.46 0.30 108.30 110.76 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 -4.49 0.60 127.20 122.71 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 -9.46 1.50 119.60 110.14 A A A OP1 P OP2 DA DA DA 5 5 5 N 1 4.23 0.60 118.60 122.83 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -5.91 0.50 129.30 123.39 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 3.42 0.50 110.60 114.02 A A A C2 N3 C4 DA DA DA 5 5 5 N 1 -2.64 0.40 121.90 119.26 A A A N3 C4 C5 DC DC DC 6 6 6 N 1 4.05 0.60 118.60 122.65 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -3.79 0.50 129.30 125.51 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 -3.61 0.50 117.70 114.09 A A A C5 C6 N1 DA DA DA 7 7 7 N 1 -5.89 0.80 109.40 103.51 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 -2.51 0.40 121.90 119.39 A A A N3 C4 C5 DC DC DC 8 8 8 N 1 A A P O5' DG DG 3 3 0.067 0.010 1.593 1.660 N 1 A A O3' P DG DT 3 4 -0.090 0.012 1.607 1.517 Y 1 A A P O5' DT DT 4 4 0.068 0.010 1.593 1.661 N 1 A A P O5' DC DC 8 8 0.074 0.010 1.593 1.667 N 0.1910000 1.450 5.000 3292 1 2.000 TR isotropic TR isotropic 1.450 5.000 35 196 0 161 0 0.004 0.043 fix fix 1.450 5.000 1D79 6017 3292 2.000 1 refinement NUCLSQ HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 12_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 12_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 12_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 12_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 12_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 6 A N3 DC 6 12_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 6 A O2 DC 6 12_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 6 A N4 DC 6 12_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 5 A N1 DA 5 12_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 5 A N6 DA 5 12_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 4 A N3 DT 4 12_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 4 A O4 DT 4 12_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 3 A N1 DG 3 12_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 3 A O6 DG 3 12_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 3 A N2 DG 3 12_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 12_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 12_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 12_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 12_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 12_555 DNA A-DNA, DOUBLE HELIX, DNA 1D79 PDB 1 1D79 1 8 1D79 1 8 1D79 A 1 1 8 178 P 61 2 2