0.006541
0.003776
0.000000
0.000000
0.007553
0.000000
0.000000
0.000000
0.011579
0.00000
0.00000
0.00000
Malashkevich, V.N.
Toney, M.D.
Strop, P.
Keller, J.
Jansonius, J.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
152.880
152.880
86.360
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C11 H16 N3 O7 P
333.234
D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
Y
88
N
N
Y
89
N
C
N
90
N
C
Y
91
N
C
N
92
N
O
Y
93
N
C
N
94
N
C
Y
95
N
C
Y
96
N
C
N
97
N
C
N
98
N
O
N
99
N
P
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
N
N
104
R
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
Y
180
N
C
Y
181
N
N
Y
182
N
C
Y
183
N
C
Y
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
S
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
K
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
S
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
NA
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
R
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
N
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
Y
83
N
doub
Y
84
N
sing
N
85
N
sing
Y
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
Y
91
N
doub
N
92
N
sing
N
93
N
sing
Y
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
Y
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
294
193
200
10.1006/jmbi.1999.3254
10556038
Crystal structures of dialkylglycine decarboxylase inhibitor complexes.
1999
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
222
873
875
Crystallization and Preliminary X-Ray Diffraction Studies of Dialkylglycine Decarboxylase, a Decarboxylating Transaminase
1991
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
265
5531
5539
Pseudomonas cepacia 2,2-Dialkylglycine Decarboxylase. Sequence and Expression in Escherichia Coli of Structural and Repressor Genes
1990
10.2210/pdb1d7s/pdb
pdb_00001d7s
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1996-06-26
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
BW6
MPG/DESY, HAMBURG
1.1
SYNCHROTRON
MPG/DESY, HAMBURG BEAMLINE BW6
46495.320
PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE))
4.1.1.64
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
333.234
D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
1
syn
non-polymer
18.015
water
143
nat
water
DGD
no
no
MSLNDDATFWRNARQHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS
GMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA
AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL
ILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV
VQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG
MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
MSLNDDATFWRNARQHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS
GMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA
AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL
ILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV
VQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG
MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Burkholderia
Escherichia
sample
292
Burkholderia cepacia
562
Escherichia coli
TY103
PKDHE19
1
3.13
61
VAPOR DIFFUSION, HANGING DROP
7.50
15% PEG 4000, 0.15 M SODIUM PYRUVATE, 0.03 M MES-KOH , pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-11-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
1999-10-19
REL
NA
SODIUM ION
K
POTASSIUM ION
DCS
D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
HOH
water
2DKB
PDB
experimental model
NA+
435
2
NA
NA
435
A
K+
436
3
K
K
436
A
DCS
500
4
DCS
DCS
500
A
WAT
501
5
HOH
HOH
501
A
WAT
502
5
HOH
HOH
502
A
WAT
503
5
HOH
HOH
503
A
WAT
504
5
HOH
HOH
504
A
WAT
505
5
HOH
HOH
505
A
WAT
506
5
HOH
HOH
506
A
WAT
507
5
HOH
HOH
507
A
WAT
508
5
HOH
HOH
508
A
WAT
509
5
HOH
HOH
509
A
WAT
510
5
HOH
HOH
510
A
WAT
511
5
HOH
HOH
511
A
WAT
512
5
HOH
HOH
512
A
WAT
513
5
HOH
HOH
513
A
WAT
514
5
HOH
HOH
514
A
WAT
515
5
HOH
HOH
515
A
WAT
516
5
HOH
HOH
516
A
WAT
517
5
HOH
HOH
517
A
WAT
518
5
HOH
HOH
518
A
WAT
519
5
HOH
HOH
519
A
WAT
520
5
HOH
HOH
520
A
WAT
521
5
HOH
HOH
521
A
WAT
522
5
HOH
HOH
522
A
WAT
523
5
HOH
HOH
523
A
WAT
524
5
HOH
HOH
524
A
WAT
525
5
HOH
HOH
525
A
WAT
526
5
HOH
HOH
526
A
WAT
527
5
HOH
HOH
527
A
WAT
528
5
HOH
HOH
528
A
WAT
529
5
HOH
HOH
529
A
WAT
530
5
HOH
HOH
530
A
WAT
531
5
HOH
HOH
531
A
WAT
532
5
HOH
HOH
532
A
WAT
533
5
HOH
HOH
533
A
WAT
534
5
HOH
HOH
534
A
WAT
535
5
HOH
HOH
535
A
WAT
536
5
HOH
HOH
536
A
WAT
537
5
HOH
HOH
537
A
WAT
538
5
HOH
HOH
538
A
WAT
540
5
HOH
HOH
540
A
WAT
541
5
HOH
HOH
541
A
WAT
542
5
HOH
HOH
542
A
WAT
543
5
HOH
HOH
543
A
WAT
544
5
HOH
HOH
544
A
WAT
545
5
HOH
HOH
545
A
WAT
546
5
HOH
HOH
546
A
WAT
547
5
HOH
HOH
547
A
WAT
548
5
HOH
HOH
548
A
WAT
549
5
HOH
HOH
549
A
WAT
550
5
HOH
HOH
550
A
WAT
551
5
HOH
HOH
551
A
WAT
552
5
HOH
HOH
552
A
WAT
553
5
HOH
HOH
553
A
WAT
554
5
HOH
HOH
554
A
WAT
555
5
HOH
HOH
555
A
WAT
556
5
HOH
HOH
556
A
WAT
557
5
HOH
HOH
557
A
WAT
558
5
HOH
HOH
558
A
WAT
559
5
HOH
HOH
559
A
WAT
560
5
HOH
HOH
560
A
WAT
561
5
HOH
HOH
561
A
WAT
562
5
HOH
HOH
562
A
WAT
563
5
HOH
HOH
563
A
WAT
564
5
HOH
HOH
564
A
WAT
565
5
HOH
HOH
565
A
WAT
566
5
HOH
HOH
566
A
WAT
568
5
HOH
HOH
568
A
WAT
569
5
HOH
HOH
569
A
WAT
570
5
HOH
HOH
570
A
WAT
571
5
HOH
HOH
571
A
WAT
572
5
HOH
HOH
572
A
WAT
573
5
HOH
HOH
573
A
WAT
574
5
HOH
HOH
574
A
WAT
575
5
HOH
HOH
575
A
WAT
576
5
HOH
HOH
576
A
WAT
577
5
HOH
HOH
577
A
WAT
578
5
HOH
HOH
578
A
WAT
580
5
HOH
HOH
580
A
WAT
581
5
HOH
HOH
581
A
WAT
582
5
HOH
HOH
582
A
WAT
583
5
HOH
HOH
583
A
WAT
584
5
HOH
HOH
584
A
WAT
585
5
HOH
HOH
585
A
WAT
586
5
HOH
HOH
586
A
WAT
587
5
HOH
HOH
587
A
WAT
588
5
HOH
HOH
588
A
WAT
589
5
HOH
HOH
589
A
WAT
590
5
HOH
HOH
590
A
WAT
591
5
HOH
HOH
591
A
WAT
601
5
HOH
HOH
601
A
WAT
602
5
HOH
HOH
602
A
WAT
603
5
HOH
HOH
603
A
WAT
604
5
HOH
HOH
604
A
WAT
605
5
HOH
HOH
605
A
WAT
606
5
HOH
HOH
606
A
WAT
607
5
HOH
HOH
607
A
WAT
608
5
HOH
HOH
608
A
WAT
609
5
HOH
HOH
609
A
WAT
610
5
HOH
HOH
610
A
WAT
611
5
HOH
HOH
611
A
WAT
612
5
HOH
HOH
612
A
WAT
613
5
HOH
HOH
613
A
WAT
614
5
HOH
HOH
614
A
WAT
615
5
HOH
HOH
615
A
WAT
616
5
HOH
HOH
616
A
WAT
617
5
HOH
HOH
617
A
WAT
618
5
HOH
HOH
618
A
WAT
619
5
HOH
HOH
619
A
WAT
622
5
HOH
HOH
622
A
WAT
627
5
HOH
HOH
627
A
WAT
628
5
HOH
HOH
628
A
WAT
629
5
HOH
HOH
629
A
WAT
630
5
HOH
HOH
630
A
WAT
631
5
HOH
HOH
631
A
WAT
632
5
HOH
HOH
632
A
WAT
633
5
HOH
HOH
633
A
WAT
635
5
HOH
HOH
635
A
WAT
636
5
HOH
HOH
636
A
WAT
638
5
HOH
HOH
638
A
WAT
639
5
HOH
HOH
639
A
WAT
641
5
HOH
HOH
641
A
WAT
642
5
HOH
HOH
642
A
WAT
643
5
HOH
HOH
643
A
WAT
644
5
HOH
HOH
644
A
WAT
645
5
HOH
HOH
645
A
WAT
646
5
HOH
HOH
646
A
WAT
648
5
HOH
HOH
648
A
WAT
650
5
HOH
HOH
650
A
WAT
652
5
HOH
HOH
652
A
WAT
661
5
HOH
HOH
661
A
WAT
662
5
HOH
HOH
662
A
WAT
663
5
HOH
HOH
663
A
WAT
664
5
HOH
HOH
664
A
WAT
665
5
HOH
HOH
665
A
WAT
666
5
HOH
HOH
666
A
WAT
667
5
HOH
HOH
667
A
WAT
670
5
HOH
HOH
670
A
WAT
671
5
HOH
HOH
671
A
WAT
674
5
HOH
HOH
674
A
WAT
675
5
HOH
HOH
675
A
WAT
676
5
HOH
HOH
676
A
WAT
677
5
HOH
HOH
677
A
WAT
679
5
HOH
HOH
679
A
WAT
680
5
HOH
HOH
680
A
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
ASN
4
n
4
ASN
4
A
ASP
5
n
5
ASP
5
A
ASP
6
n
6
ASP
6
A
ALA
7
n
7
ALA
7
A
THR
8
n
8
THR
8
A
PHE
9
n
9
PHE
9
A
TRP
10
n
10
TRP
10
A
ARG
11
n
11
ARG
11
A
ASN
12
n
12
ASN
12
A
ALA
13
n
13
ALA
13
A
ARG
14
n
14
ARG
14
A
GLN
15
n
15
GLN
15
A
HIS
16
n
16
HIS
16
A
LEU
17
n
17
LEU
17
A
VAL
18
n
18
VAL
18
A
ARG
19
n
19
ARG
19
A
TYR
20
n
20
TYR
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
PHE
24
n
24
PHE
24
A
GLU
25
n
25
GLU
25
A
PRO
26
n
26
PRO
26
A
MET
27
n
27
MET
27
A
ILE
28
n
28
ILE
28
A
ILE
29
n
29
ILE
29
A
GLU
30
n
30
GLU
30
A
ARG
31
n
31
ARG
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
PHE
36
n
36
PHE
36
A
VAL
37
n
37
VAL
37
A
TYR
38
n
38
TYR
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
ASP
41
n
41
ASP
41
A
GLY
42
n
42
GLY
42
A
ARG
43
n
43
ARG
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
PHE
48
n
48
PHE
48
A
THR
49
n
49
THR
49
A
SER
50
n
50
SER
50
A
GLY
51
n
51
GLY
51
A
GLN
52
n
52
GLN
52
A
MET
53
n
53
MET
53
A
SER
54
n
54
SER
54
A
ALA
55
n
55
ALA
55
A
VAL
56
n
56
VAL
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
HIS
59
n
59
HIS
59
A
CYS
60
n
60
CYS
60
A
HIS
61
n
61
HIS
61
A
PRO
62
n
62
PRO
62
A
GLU
63
n
63
GLU
63
A
ILE
64
n
64
ILE
64
A
VAL
65
n
65
VAL
65
A
SER
66
n
66
SER
66
A
VAL
67
n
67
VAL
67
A
ILE
68
n
68
ILE
68
A
GLY
69
n
69
GLY
69
A
GLU
70
n
70
GLU
70
A
TYR
71
n
71
TYR
71
A
ALA
72
n
72
ALA
72
A
GLY
73
n
73
GLY
73
A
LYS
74
n
74
LYS
74
A
LEU
75
n
75
LEU
75
A
ASP
76
n
76
ASP
76
A
HIS
77
n
77
HIS
77
A
LEU
78
n
78
LEU
78
A
PHE
79
n
79
PHE
79
A
SER
80
n
80
SER
80
A
GLY
81
n
81
GLY
81
A
MET
82
n
82
MET
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ARG
85
n
85
ARG
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
VAL
88
n
88
VAL
88
A
ASP
89
n
89
ASP
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
THR
92
n
92
THR
92
A
ARG
93
n
93
ARG
93
A
LEU
94
n
94
LEU
94
A
ALA
95
n
95
ALA
95
A
ASN
96
n
96
ASN
96
A
ILE
97
n
97
ILE
97
A
THR
98
n
98
THR
98
A
PRO
99
n
99
PRO
99
A
PRO
100
n
100
PRO
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ASP
103
n
103
ASP
103
A
ARG
104
n
104
ARG
104
A
ALA
105
n
105
ALA
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
LEU
108
n
108
LEU
108
A
SER
109
n
109
SER
109
A
THR
110
n
110
THR
110
A
GLY
111
n
111
GLY
111
A
ALA
112
n
112
ALA
112
A
GLU
113
n
113
GLU
113
A
SER
114
n
114
SER
114
A
ASN
115
n
115
ASN
115
A
GLU
116
n
116
GLU
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
ILE
119
n
119
ILE
119
A
ARG
120
n
120
ARG
120
A
MET
121
n
121
MET
121
A
ALA
122
n
122
ALA
122
A
LYS
123
n
123
LYS
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
THR
126
n
126
THR
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
TYR
129
n
129
TYR
129
A
GLU
130
n
130
GLU
130
A
ILE
131
n
131
ILE
131
A
VAL
132
n
132
VAL
132
A
GLY
133
n
133
GLY
133
A
PHE
134
n
134
PHE
134
A
ALA
135
n
135
ALA
135
A
GLN
136
n
136
GLN
136
A
SER
137
n
137
SER
137
A
TRP
138
n
138
TRP
138
A
HIS
139
n
139
HIS
139
A
GLY
140
n
140
GLY
140
A
MET
141
n
141
MET
141
A
THR
142
n
142
THR
142
A
GLY
143
n
143
GLY
143
A
ALA
144
n
144
ALA
144
A
ALA
145
n
145
ALA
145
A
ALA
146
n
146
ALA
146
A
SER
147
n
147
SER
147
A
ALA
148
n
148
ALA
148
A
THR
149
n
149
THR
149
A
TYR
150
n
150
TYR
150
A
SER
151
n
151
SER
151
A
ALA
152
n
152
ALA
152
A
GLY
153
n
153
GLY
153
A
ARG
154
n
154
ARG
154
A
LYS
155
n
155
LYS
155
A
GLY
156
n
156
GLY
156
A
VAL
157
n
157
VAL
157
A
GLY
158
n
158
GLY
158
A
PRO
159
n
159
PRO
159
A
ALA
160
n
160
ALA
160
A
ALA
161
n
161
ALA
161
A
VAL
162
n
162
VAL
162
A
GLY
163
n
163
GLY
163
A
SER
164
n
164
SER
164
A
PHE
165
n
165
PHE
165
A
ALA
166
n
166
ALA
166
A
ILE
167
n
167
ILE
167
A
PRO
168
n
168
PRO
168
A
ALA
169
n
169
ALA
169
A
PRO
170
n
170
PRO
170
A
PHE
171
n
171
PHE
171
A
THR
172
n
172
THR
172
A
TYR
173
n
173
TYR
173
A
ARG
174
n
174
ARG
174
A
PRO
175
n
175
PRO
175
A
ARG
176
n
176
ARG
176
A
PHE
177
n
177
PHE
177
A
GLU
178
n
178
GLU
178
A
ARG
179
n
179
ARG
179
A
ASN
180
n
180
ASN
180
A
GLY
181
n
181
GLY
181
A
ALA
182
n
182
ALA
182
A
TYR
183
n
183
TYR
183
A
ASP
184
n
184
ASP
184
A
TYR
185
n
185
TYR
185
A
LEU
186
n
186
LEU
186
A
ALA
187
n
187
ALA
187
A
GLU
188
n
188
GLU
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
TYR
191
n
191
TYR
191
A
ALA
192
n
192
ALA
192
A
PHE
193
n
193
PHE
193
A
ASP
194
n
194
ASP
194
A
LEU
195
n
195
LEU
195
A
ILE
196
n
196
ILE
196
A
ASP
197
n
197
ASP
197
A
ARG
198
n
198
ARG
198
A
GLN
199
n
199
GLN
199
A
SER
200
n
200
SER
200
A
SER
201
n
201
SER
201
A
GLY
202
n
202
GLY
202
A
ASN
203
n
203
ASN
203
A
LEU
204
n
204
LEU
204
A
ALA
205
n
205
ALA
205
A
ALA
206
n
206
ALA
206
A
PHE
207
n
207
PHE
207
A
ILE
208
n
208
ILE
208
A
ALA
209
n
209
ALA
209
A
GLU
210
n
210
GLU
210
A
PRO
211
n
211
PRO
211
A
ILE
212
n
212
ILE
212
A
LEU
213
n
213
LEU
213
A
SER
214
n
214
SER
214
A
SER
215
n
215
SER
215
A
GLY
216
n
216
GLY
216
A
GLY
217
n
217
GLY
217
A
ILE
218
n
218
ILE
218
A
ILE
219
n
219
ILE
219
A
GLU
220
n
220
GLU
220
A
LEU
221
n
221
LEU
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
GLY
224
n
224
GLY
224
A
TYR
225
n
225
TYR
225
A
MET
226
n
226
MET
226
A
ALA
227
n
227
ALA
227
A
ALA
228
n
228
ALA
228
A
LEU
229
n
229
LEU
229
A
LYS
230
n
230
LYS
230
A
ARG
231
n
231
ARG
231
A
LYS
232
n
232
LYS
232
A
CYS
233
n
233
CYS
233
A
GLU
234
n
234
GLU
234
A
ALA
235
n
235
ALA
235
A
ARG
236
n
236
ARG
236
A
GLY
237
n
237
GLY
237
A
MET
238
n
238
MET
238
A
LEU
239
n
239
LEU
239
A
LEU
240
n
240
LEU
240
A
ILE
241
n
241
ILE
241
A
LEU
242
n
242
LEU
242
A
ASP
243
n
243
ASP
243
A
GLU
244
n
244
GLU
244
A
ALA
245
n
245
ALA
245
A
GLN
246
n
246
GLN
246
A
THR
247
n
247
THR
247
A
GLY
248
n
248
GLY
248
A
VAL
249
n
249
VAL
249
A
GLY
250
n
250
GLY
250
A
ARG
251
n
251
ARG
251
A
THR
252
n
252
THR
252
A
GLY
253
n
253
GLY
253
A
THR
254
n
254
THR
254
A
MET
255
n
255
MET
255
A
PHE
256
n
256
PHE
256
A
ALA
257
n
257
ALA
257
A
CYS
258
n
258
CYS
258
A
GLN
259
n
259
GLN
259
A
ARG
260
n
260
ARG
260
A
ASP
261
n
261
ASP
261
A
GLY
262
n
262
GLY
262
A
VAL
263
n
263
VAL
263
A
THR
264
n
264
THR
264
A
PRO
265
n
265
PRO
265
A
ASP
266
n
266
ASP
266
A
ILE
267
n
267
ILE
267
A
LEU
268
n
268
LEU
268
A
THR
269
n
269
THR
269
A
LEU
270
n
270
LEU
270
A
SER
271
n
271
SER
271
A
LYS
272
n
272
LYS
272
A
THR
273
n
273
THR
273
A
LEU
274
n
274
LEU
274
A
GLY
275
n
275
GLY
275
A
ALA
276
n
276
ALA
276
A
GLY
277
n
277
GLY
277
A
LEU
278
n
278
LEU
278
A
PRO
279
n
279
PRO
279
A
LEU
280
n
280
LEU
280
A
ALA
281
n
281
ALA
281
A
ALA
282
n
282
ALA
282
A
ILE
283
n
283
ILE
283
A
VAL
284
n
284
VAL
284
A
THR
285
n
285
THR
285
A
SER
286
n
286
SER
286
A
ALA
287
n
287
ALA
287
A
ALA
288
n
288
ALA
288
A
ILE
289
n
289
ILE
289
A
GLU
290
n
290
GLU
290
A
GLU
291
n
291
GLU
291
A
ARG
292
n
292
ARG
292
A
ALA
293
n
293
ALA
293
A
HIS
294
n
294
HIS
294
A
GLU
295
n
295
GLU
295
A
LEU
296
n
296
LEU
296
A
GLY
297
n
297
GLY
297
A
TYR
298
n
298
TYR
298
A
LEU
299
n
299
LEU
299
A
PHE
300
n
300
PHE
300
A
TYR
301
n
301
TYR
301
A
THR
302
n
302
THR
302
A
THR
303
n
303
THR
303
A
HIS
304
n
304
HIS
304
A
VAL
305
n
305
VAL
305
A
SER
306
n
306
SER
306
A
ASP
307
n
307
ASP
307
A
PRO
308
n
308
PRO
308
A
LEU
309
n
309
LEU
309
A
PRO
310
n
310
PRO
310
A
ALA
311
n
311
ALA
311
A
ALA
312
n
312
ALA
312
A
VAL
313
n
313
VAL
313
A
GLY
314
n
314
GLY
314
A
LEU
315
n
315
LEU
315
A
ARG
316
n
316
ARG
316
A
VAL
317
n
317
VAL
317
A
LEU
318
n
318
LEU
318
A
ASP
319
n
319
ASP
319
A
VAL
320
n
320
VAL
320
A
VAL
321
n
321
VAL
321
A
GLN
322
n
322
GLN
322
A
ARG
323
n
323
ARG
323
A
ASP
324
n
324
ASP
324
A
GLY
325
n
325
GLY
325
A
LEU
326
n
326
LEU
326
A
VAL
327
n
327
VAL
327
A
ALA
328
n
328
ALA
328
A
ARG
329
n
329
ARG
329
A
ALA
330
n
330
ALA
330
A
ASN
331
n
331
ASN
331
A
VAL
332
n
332
VAL
332
A
MET
333
n
333
MET
333
A
GLY
334
n
334
GLY
334
A
ASP
335
n
335
ASP
335
A
ARG
336
n
336
ARG
336
A
LEU
337
n
337
LEU
337
A
ARG
338
n
338
ARG
338
A
ARG
339
n
339
ARG
339
A
GLY
340
n
340
GLY
340
A
LEU
341
n
341
LEU
341
A
LEU
342
n
342
LEU
342
A
ASP
343
n
343
ASP
343
A
LEU
344
n
344
LEU
344
A
MET
345
n
345
MET
345
A
GLU
346
n
346
GLU
346
A
ARG
347
n
347
ARG
347
A
PHE
348
n
348
PHE
348
A
ASP
349
n
349
ASP
349
A
CYS
350
n
350
CYS
350
A
ILE
351
n
351
ILE
351
A
GLY
352
n
352
GLY
352
A
ASP
353
n
353
ASP
353
A
VAL
354
n
354
VAL
354
A
ARG
355
n
355
ARG
355
A
GLY
356
n
356
GLY
356
A
ARG
357
n
357
ARG
357
A
GLY
358
n
358
GLY
358
A
LEU
359
n
359
LEU
359
A
LEU
360
n
360
LEU
360
A
LEU
361
n
361
LEU
361
A
GLY
362
n
362
GLY
362
A
VAL
363
n
363
VAL
363
A
GLU
364
n
364
GLU
364
A
ILE
365
n
365
ILE
365
A
VAL
366
n
366
VAL
366
A
LYS
367
n
367
LYS
367
A
ASP
368
n
368
ASP
368
A
ARG
369
n
369
ARG
369
A
ARG
370
n
370
ARG
370
A
THR
371
n
371
THR
371
A
LYS
372
n
372
LYS
372
A
GLU
373
n
373
GLU
373
A
PRO
374
n
374
PRO
374
A
ALA
375
n
375
ALA
375
A
ASP
376
n
376
ASP
376
A
GLY
377
n
377
GLY
377
A
LEU
378
n
378
LEU
378
A
GLY
379
n
379
GLY
379
A
ALA
380
n
380
ALA
380
A
LYS
381
n
381
LYS
381
A
ILE
382
n
382
ILE
382
A
THR
383
n
383
THR
383
A
ARG
384
n
384
ARG
384
A
GLU
385
n
385
GLU
385
A
CYS
386
n
386
CYS
386
A
MET
387
n
387
MET
387
A
ASN
388
n
388
ASN
388
A
LEU
389
n
389
LEU
389
A
GLY
390
n
390
GLY
390
A
LEU
391
n
391
LEU
391
A
SER
392
n
392
SER
392
A
MET
393
n
393
MET
393
A
ASN
394
n
394
ASN
394
A
ILE
395
n
395
ILE
395
A
VAL
396
n
396
VAL
396
A
GLN
397
n
397
GLN
397
A
LEU
398
n
398
LEU
398
A
PRO
399
n
399
PRO
399
A
GLY
400
n
400
GLY
400
A
MET
401
n
401
MET
401
A
GLY
402
n
402
GLY
402
A
GLY
403
n
403
GLY
403
A
VAL
404
n
404
VAL
404
A
PHE
405
n
405
PHE
405
A
ARG
406
n
406
ARG
406
A
ILE
407
n
407
ILE
407
A
ALA
408
n
408
ALA
408
A
PRO
409
n
409
PRO
409
A
PRO
410
n
410
PRO
410
A
LEU
411
n
411
LEU
411
A
THR
412
n
412
THR
412
A
VAL
413
n
413
VAL
413
A
SER
414
n
414
SER
414
A
GLU
415
n
415
GLU
415
A
ASP
416
n
416
ASP
416
A
GLU
417
n
417
GLU
417
A
ILE
418
n
418
ILE
418
A
ASP
419
n
419
ASP
419
A
LEU
420
n
420
LEU
420
A
GLY
421
n
421
GLY
421
A
LEU
422
n
422
LEU
422
A
SER
423
n
423
SER
423
A
LEU
424
n
424
LEU
424
A
LEU
425
n
425
LEU
425
A
GLY
426
n
426
GLY
426
A
GLN
427
n
427
GLN
427
A
ALA
428
n
428
ALA
428
A
ILE
429
n
429
ILE
429
A
GLU
430
n
430
GLU
430
A
ARG
431
n
431
ARG
431
A
ALA
432
n
432
ALA
432
A
LEU
433
n
433
LEU
433
A
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
28730
-183
50360
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
A
SER
80
A
OG
SER
80
1_555
99.6
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
A
THR
303
A
O
THR
303
1_555
105.4
A
SER
80
A
OG
SER
80
1_555
A
K
436
C
K
K
1_555
A
THR
303
A
O
THR
303
1_555
75.5
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
151.3
A
SER
80
A
OG
SER
80
1_555
A
K
436
C
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
83.9
A
THR
303
A
O
THR
303
1_555
A
K
436
C
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
103.1
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
84.8
A
SER
80
A
OG
SER
80
1_555
A
K
436
C
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
167.1
A
THR
303
A
O
THR
303
1_555
A
K
436
C
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
91.7
A
VAL
305
A
O
VAL
305
1_555
A
K
436
C
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
98.0
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
75.8
A
SER
80
A
OG
SER
80
1_555
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
103.4
A
THR
303
A
O
THR
303
1_555
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
178.5
A
VAL
305
A
O
VAL
305
1_555
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
75.7
A
ASP
307
A
OD1
ASP
307
1_555
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
89.4
A
ALA
95
A
O
ALA
95
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
98
1_555
87.5
A
ALA
95
A
O
ALA
95
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
98
1_555
74.8
A
THR
98
A
O
THR
98
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
98
1_555
64.9
A
ALA
95
A
O
ALA
95
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
154.4
A
THR
98
A
O
THR
98
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
68.6
A
THR
98
A
OG1
THR
98
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
86.4
A
ALA
95
A
O
ALA
95
1_555
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
98.8
A
THR
98
A
O
THR
98
1_555
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
140.3
A
THR
98
A
OG1
THR
98
1_555
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
79.0
A
PRO
99
A
O
PRO
99
1_555
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
94.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
76.4400000000
132.3979637306
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
28.7866666667
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/3
crystal symmetry operation
76.4400000000
132.3979637306
28.7866666667
A
N
LYS
33
A
N
LYS
33
A
O
PHE
36
A
O
PHE
36
A
O
VAL
37
A
O
VAL
37
A
N
ILE
45
A
N
ILE
45
A
O
LEU
46
A
O
LEU
46
A
N
SER
392
A
N
SER
392
A
N
LEU
108
A
N
LEU
108
A
O
ALA
281
A
O
ALA
281
A
O
VAL
284
A
O
VAL
284
A
N
LEU
268
A
N
LEU
268
A
N
ILE
267
A
N
ILE
267
A
O
LEU
240
A
O
LEU
240
A
N
LEU
239
A
N
LEU
239
A
O
ALA
205
A
O
ALA
205
A
N
ALA
205
A
N
ALA
205
A
O
GLU
130
A
O
GLU
130
A
O
ILE
131
A
O
ILE
131
A
N
PHE
165
A
N
PHE
165
A
N
LEU
213
A
N
LEU
213
A
O
ILE
219
A
O
ILE
219
A
O
ARG
357
A
O
ARG
357
A
N
LEU
360
A
N
LEU
360
A
N
ILE
365
A
N
ILE
365
A
O
GLY
403
A
O
GLY
403
A
O
VAL
404
A
O
VAL
404
A
N
VAL
396
A
N
VAL
396
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
3.22
0.50
120.30
123.52
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
251
251
251
N
1
3.38
0.50
120.30
123.68
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
370
370
370
N
1
A
A
O
O
HOH
HOH
675
675
1.67
1_555
10_665
1
A
A
O
O
HOH
HOH
574
574
1.85
1_555
10_665
1
A
ASP
6
-47.13
107.18
1
A
GLN
52
-97.42
56.86
1
A
ALA
55
-61.62
71.74
1
A
ASP
76
-105.91
-66.77
1
A
LEU
108
-115.62
-154.02
1
A
SER
271
-162.20
-87.25
1
A
PHE
300
-155.78
65.98
1
A
ARG
369
-67.64
27.38
1
A
ARG
370
-140.83
-47.70
1
A
ALA
408
-152.30
78.15
35.26
0.1860000
2.05
10.0
37024
97.5
1
RESTRAINED
2.000
MOLECULAR REPLACEMENT
2DKB
FLAT MODEL
186.8
0.72
0.26
5.00
0.26
2.05
10.0
143
3413
24
0
3246
0.012
1.69
27.04
2.05
35.0
1D7S
36835
-3.000
0.0750000
1
7.1000
4.000
97.5
0.3660000
2.05
2.10
1
2.40
73.2
phasing
AMoRE
refinement
TNT
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF THE COMPLEX OF 2,2-DIALKYLGLYCINE DECARBOXYLASE WITH DCS
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ASP
6
A
ASP
6
HELX_P
A
LEU
17
A
LEU
17
1
1
12
A
THR
49
A
THR
49
HELX_P
A
SER
54
A
SER
54
1
2
6
A
HIS
61
A
HIS
61
HELX_P
A
GLY
73
A
GLY
73
1
3
13
A
SER
84
A
SER
84
HELX_P
A
THR
98
A
THR
98
1
4
15
A
THR
110
A
THR
110
HELX_P
A
GLY
127
A
GLY
127
1
5
18
A
THR
142
A
THR
142
HELX_P
A
ALA
148
A
ALA
148
1
6
7
A
ASP
184
A
ASP
184
HELX_P
A
SER
200
A
SER
200
1
7
17
A
GLY
224
A
GLY
224
HELX_P
A
ARG
236
A
ARG
236
1
8
13
A
PHE
256
A
PHE
256
HELX_P
A
GLY
262
A
GLY
262
1
9
7
A
SER
271
A
SER
271
HELX_P
A
ALA
276
A
ALA
276
1
10
6
A
SER
286
A
SER
286
HELX_P
A
LEU
296
A
LEU
296
1
11
11
A
ASP
307
A
ASP
307
HELX_P
A
ASP
324
A
ASP
324
1
12
18
A
GLY
325
A
GLY
325
HELX_P
A
PHE
348
A
PHE
348
1
13
24
A
GLY
377
A
GLY
377
HELX_P
A
GLY
390
A
GLY
390
1
14
14
A
SER
414
A
SER
414
HELX_P
A
LEU
433
A
LEU
433
1
15
20
metalc
2.596
A
LEU
78
A
O
LEU
78
1_555
A
K
436
C
K
K
1_555
metalc
2.719
A
SER
80
A
OG
SER
80
1_555
A
K
436
C
K
K
1_555
metalc
2.422
A
ALA
95
A
O
ALA
95
1_555
A
NA
435
B
NA
NA
1_555
metalc
2.610
A
THR
98
A
O
THR
98
1_555
A
NA
435
B
NA
NA
1_555
metalc
2.983
A
THR
98
A
OG1
THR
98
1_555
A
NA
435
B
NA
NA
1_555
metalc
2.503
A
PRO
99
A
O
PRO
99
1_555
A
NA
435
B
NA
NA
1_555
metalc
2.581
A
LEU
102
A
O
LEU
102
1_555
A
NA
435
B
NA
NA
1_555
metalc
2.941
A
THR
303
A
O
THR
303
1_555
A
K
436
C
K
K
1_555
metalc
2.814
A
VAL
305
A
O
VAL
305
1_555
A
K
436
C
K
K
1_555
metalc
2.585
A
ASP
307
A
OD1
ASP
307
1_555
A
K
436
C
K
K
1_555
metalc
2.683
A
K
436
C
K
K
1_555
A
HOH
529
E
O
HOH
1_555
LYASE
ENZYME COMPLEXES, CATALYTIC MECHANISM, DECARBOXYLATION INHIBITOR, LYSASE, LYASE
DGDA_BURCE
UNP
1
P16932
1
433
1D7S
1
433
P16932
A
1
1
433
4
7
2
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
29
A
ILE
29
A
LYS
33
A
LYS
33
A
PHE
36
A
PHE
36
A
ASP
39
A
ASP
39
A
ALA
44
A
ALA
44
A
ASP
47
A
ASP
47
A
LEU
391
A
LEU
391
A
SER
392
A
SER
392
A
ARG
104
A
ARG
104
A
LEU
108
A
LEU
108
A
ALA
281
A
ALA
281
A
THR
285
A
THR
285
A
ILE
267
A
ILE
267
A
LEU
270
A
LEU
270
A
LEU
239
A
LEU
239
A
ASP
243
A
ASP
243
A
LEU
204
A
LEU
204
A
ALA
209
A
ALA
209
A
GLU
130
A
GLU
130
A
PHE
134
A
PHE
134
A
SER
164
A
SER
164
A
ILE
167
A
ILE
167
A
ILE
212
A
ILE
212
A
LEU
213
A
LEU
213
A
ILE
219
A
ILE
219
A
GLU
220
A
GLU
220
A
ILE
351
A
ILE
351
A
ARG
357
A
ARG
357
A
LEU
360
A
LEU
360
A
ILE
365
A
ILE
365
A
GLY
403
A
GLY
403
A
ILE
407
A
ILE
407
A
ILE
395
A
ILE
395
A
VAL
396
A
VAL
396
BINDING SITE FOR RESIDUE NA A 435
A
NA
435
Software
4
BINDING SITE FOR RESIDUE K A 436
A
K
436
Software
6
BINDING SITE FOR RESIDUE DCS A 500
A
DCS
500
Software
22
A
ALA
95
A
ALA
95
4
1_555
A
THR
98
A
THR
98
4
1_555
A
PRO
99
A
PRO
99
4
1_555
A
LEU
102
A
LEU
102
4
1_555
A
LEU
78
A
LEU
78
6
1_555
A
SER
80
A
SER
80
6
1_555
A
THR
303
A
THR
303
6
1_555
A
VAL
305
A
VAL
305
6
1_555
A
ASP
307
A
ASP
307
6
1_555
A
HOH
529
E
HOH
6
1_555
A
GLN
52
A
GLN
52
22
1_555
A
GLY
111
A
GLY
111
22
1_555
A
ALA
112
A
ALA
112
22
1_555
A
ASN
115
A
ASN
115
22
1_555
A
TRP
138
A
TRP
138
22
1_555
A
HIS
139
A
HIS
139
22
1_555
A
GLU
210
A
GLU
210
22
1_555
A
SER
215
A
SER
215
22
1_555
A
ASP
243
A
ASP
243
22
1_555
A
ALA
245
A
ALA
245
22
1_555
A
GLN
246
A
GLN
246
22
1_555
A
LYS
272
A
LYS
272
22
1_555
A
TYR
301
A
TYR
301
22
7_555
A
THR
302
A
THR
302
22
7_555
A
THR
303
A
THR
303
22
7_555
A
ARG
406
A
ARG
406
22
1_555
A
HOH
504
E
HOH
22
1_555
A
HOH
511
E
HOH
22
7_555
A
HOH
513
E
HOH
22
7_555
A
HOH
602
E
HOH
22
1_555
A
HOH
604
E
HOH
22
7_555
A
HOH
605
E
HOH
22
7_555
181
P 64 2 2