0.039308 0.000000 0.000000 0.000000 0.024050 0.000000 0.000000 0.000000 0.015129 0.00000 0.00000 0.00000 Skelly, J.V. Edwards, K.J. Jenkins, T.C. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.440 41.580 66.100 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 804 808 10.1073/pnas.90.3.804 8430089 Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation. 1993 10.2210/pdb1d80/pdb pdb_00001d80 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 283.00 1 AREA DETECTOR XENTRONICS x-ray 1 1.0 ROTATING ANODE ENRAF-NONIUS FR571 3703.416 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3') 2 syn polymer 18.015 water 72 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DG)(DG)(DC)(DG) CGCGAATTGGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.36 47.88 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION, temperature 279.00K 279.00 WATER 1 SPERMINE 1 MGCL2 1 NA CACODYLATE 1 WATER 2 MPD 2 2.934 1 19 A 1 B 24 -6.359 A_DC1:DG24_B 1 -9.431 0.139 0.253 -0.247 -2.708 1 19 A 2 B 23 0.348 A_DG2:DC23_B 2 -11.547 -0.072 0.021 -0.071 -0.104 1 19 A 3 B 22 -5.892 A_DC3:DG22_B 3 -7.275 -0.319 0.054 -0.162 -6.489 3 6 A 4 B 21 -87.164 A_DG4:DG21_B 4 -21.442 0.717 0.375 3.634 9.080 1 20 A 5 B 20 -4.218 A_DA5:DT20_B 5 -21.339 0.186 -0.265 0.028 2.936 1 20 A 6 B 19 -1.565 A_DA6:DT19_B 6 -19.904 -0.095 0.156 -0.076 -4.029 1 20 A 7 B 18 -4.551 A_DT7:DA18_B 7 -19.291 -0.148 0.063 -0.011 0.738 1 20 A 8 B 17 -6.424 A_DT8:DA17_B 8 -23.341 0.211 -0.067 -0.092 6.783 3 6 A 9 B 16 91.631 A_DG9:DG16_B 9 13.699 -0.868 0.144 -3.538 5.950 1 19 A 10 B 15 -4.800 A_DG10:DC15_B 10 -2.842 0.343 -0.149 -0.102 13.389 1 19 A 11 B 14 -3.411 A_DC11:DG14_B 11 -16.554 0.587 -0.043 -0.282 -5.622 1 19 A 12 B 13 -4.970 A_DG12:DC13_B 12 -5.995 0.078 -0.064 -0.119 3.494 39.898 A A 1 2 5.940 B B 24 23 3.530 4.042 -0.215 0.092 AA_DC1DG2:DC23DG24_BB 1 3.301 -4.851 39.569 -0.367 0.726 3.191 36.161 A A 2 3 1.253 B B 23 22 3.178 0.778 0.419 0.488 AA_DG2DC3:DG22DC23_BB 2 0.342 -0.550 36.151 0.680 -0.629 3.357 75.306 A A 3 4 2.243 B B 22 21 3.339 2.739 1.502 -0.924 AA_DC3DG4:DG21DG22_BB 3 2.979 -2.439 75.213 -0.841 -1.137 2.648 -9.386 A A 4 5 -15.232 B B 21 20 3.232 2.406 -0.677 1.933 AA_DG4DA5:DT20DG21_BB 4 3.395 21.495 -8.414 -16.660 2.703 3.174 35.872 A A 5 6 3.316 B B 20 19 3.204 2.038 -0.086 -0.318 AA_DA5DA6:DT19DT20_BB 5 -3.642 5.926 35.636 -0.802 -0.370 3.496 33.524 A A 6 7 4.249 B B 19 18 3.547 2.448 0.231 -0.665 AA_DA6DT7:DA18DT19_BB 6 0.935 -1.622 33.424 -1.588 -0.234 3.204 37.882 A A 7 8 -4.494 B B 18 17 3.164 -2.914 -0.452 -0.446 AA_DT7DT8:DA17DA18_BB 7 -1.531 2.361 37.744 -0.322 0.504 -0.323 175.529 A A 8 9 6.885 B B 17 16 1.754 13.525 0.678 -3.593 AA_DT8DG9:DG16DA17_BB 8 -174.744 88.956 38.372 -1.837 -0.847 1.341 -175.682 A A 9 10 57.163 B B 16 15 -0.136 -111.796 -3.030 -1.540 AA_DG9DG10:DC15DG16_BB 9 135.502 69.285 -9.426 1.124 -1.088 3.115 39.368 A A 10 11 -6.849 B B 15 14 3.171 -4.601 -0.637 0.633 AA_DG10DC11:DG14DC15_BB 10 -2.686 3.999 39.020 1.466 0.639 3.953 38.265 A A 11 12 4.036 B B 14 13 3.952 2.643 -0.212 0.152 AA_DC11DG12:DC13DG14_BB 11 -0.091 0.139 38.177 -0.170 0.309 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-06-17 REL REL HOH water HOH 25 2 HOH HOH 25 A HOH 27 2 HOH HOH 27 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 63 2 HOH HOH 63 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 68 2 HOH HOH 68 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A HOH 78 2 HOH HOH 78 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 92 2 HOH HOH 92 A HOH 93 2 HOH HOH 93 A HOH 94 2 HOH HOH 94 A HOH 96 2 HOH HOH 96 A HOH 26 2 HOH HOH 26 B HOH 28 2 HOH HOH 28 B HOH 33 2 HOH HOH 33 B HOH 34 2 HOH HOH 34 B HOH 35 2 HOH HOH 35 B HOH 40 2 HOH HOH 40 B HOH 47 2 HOH HOH 47 B HOH 48 2 HOH HOH 48 B HOH 49 2 HOH HOH 49 B HOH 50 2 HOH HOH 50 B HOH 56 2 HOH HOH 56 B HOH 57 2 HOH HOH 57 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 62 2 HOH HOH 62 B HOH 64 2 HOH HOH 64 B HOH 67 2 HOH HOH 67 B HOH 71 2 HOH HOH 71 B HOH 72 2 HOH HOH 72 B HOH 73 2 HOH HOH 73 B HOH 74 2 HOH HOH 74 B HOH 82 2 HOH HOH 82 B HOH 85 2 HOH HOH 85 B HOH 86 2 HOH HOH 86 B HOH 87 2 HOH HOH 87 B HOH 88 2 HOH HOH 88 B HOH 89 2 HOH HOH 89 B HOH 90 2 HOH HOH 90 B HOH 91 2 HOH HOH 91 B HOH 95 2 HOH HOH 95 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B G 21 n 9 DG 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A N9 O DG HOH 2 59 0.29 1 A A C8 O DG HOH 2 59 1.13 1 A A O4' O DC HOH 11 93 1.23 1 A A O2 O DC HOH 1 37 1.29 1 A A C4 O DG HOH 2 59 1.42 1 B B N3 O DC HOH 23 60 1.51 1 A B N1 O DG HOH 2 60 1.56 1 B B O5' O DC HOH 15 67 1.63 1 A A O6 O DG HOH 2 69 1.68 1 A A C1' O DG HOH 2 59 1.69 1 A A OP1 O DC HOH 3 68 1.72 1 B B C4' O DC HOH 15 67 1.75 1 B B C5' O DC HOH 15 67 1.75 1 A A N7 O DG HOH 2 69 1.86 1 A A C1' O DC HOH 11 93 1.86 1 B B O4' O DC HOH 15 67 1.89 1 A A C2 O DC HOH 1 37 1.91 1 A A OP1 O DG HOH 9 52 1.93 1 A A C6 O DG HOH 2 69 1.93 1 A A C5 O DG HOH 2 69 1.98 1 A A N7 O DG HOH 2 59 2.01 1 B B C3' O DC HOH 15 67 2.03 1 A A N1 O DC HOH 11 93 2.05 1 B A N2 O DG HOH 24 37 2.05 1 A A C5 O DG HOH 2 59 2.07 1 A A N2 O DG HOH 2 43 2.09 1 A A P O DC HOH 3 68 2.14 1 A A C4' O DC HOH 11 93 2.18 1 B B O3' P DC DG 15 16 1.79 1 -4.81 0.80 109.40 104.59 A A A O5' C5' C4' DC DC DC 1 1 1 N 1 -6.99 0.80 102.40 95.41 A A A C3' C2' C1' DC DC DC 1 1 1 N 1 2.79 0.30 108.30 111.09 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -8.44 0.80 109.40 100.96 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -4.90 0.60 125.10 120.20 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 3.62 0.50 111.50 115.12 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 -4.79 0.60 119.90 115.11 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 -10.55 1.50 119.60 109.05 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 16.59 1.60 120.90 137.49 A A A P O5' C5' DC DC DC 3 3 3 N 1 -6.75 1.00 110.10 103.35 A A A C1' O4' C4' DC DC DC 3 3 3 N 1 -8.02 1.20 119.70 111.68 A A A C3' O3' P DC DC DG 3 3 4 Y 1 -7.33 0.80 109.40 102.07 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 -6.65 0.80 102.40 95.75 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 10.21 0.30 108.30 118.51 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -5.48 0.60 125.10 119.62 A A A C6 N1 C2 DG DG DG 4 4 4 N 1 4.88 0.50 111.50 116.38 A A A C5 C6 N1 DG DG DG 4 4 4 N 1 -5.37 0.70 119.90 114.53 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 -5.48 0.60 128.60 123.12 A A A C5 C6 O6 DG DG DG 4 4 4 N 1 8.68 1.20 110.70 119.38 A A A O5' P OP2 DA DA DA 5 5 5 N 1 -4.96 0.70 102.20 97.24 A A A C4' C3' C2' DA DA DA 5 5 5 N 1 6.99 0.30 108.30 115.29 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 35.95 1.20 119.70 155.65 A A A C3' O3' P DA DA DA 5 5 6 Y 1 7.21 1.10 110.50 117.71 A A A O3' P OP1 DA DA DA 5 6 6 Y 1 4.32 0.60 118.60 122.92 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 -3.05 0.50 129.30 126.25 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 -4.29 0.50 117.70 113.41 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 7.67 1.10 110.50 118.17 A A A O3' P OP1 DA DT DT 6 7 7 Y 1 -6.94 0.80 109.40 102.46 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 5.21 0.60 114.60 119.81 A A A N1 C2 N3 DT DT DT 7 7 7 N 1 -6.81 0.60 127.20 120.39 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.21 0.60 115.20 119.41 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 9.40 1.20 119.70 129.10 A A A C3' O3' P DT DT DT 7 7 8 Y 1 17.26 1.90 104.00 121.26 A A A O3' P O5' DT DT DT 7 8 8 Y 1 -13.69 2.20 105.20 91.51 A A A O3' P OP2 DT DT DT 7 8 8 Y 1 -13.57 1.50 119.60 106.03 A A A OP1 P OP2 DT DT DT 8 8 8 N 1 19.03 1.60 120.90 139.93 A A A P O5' C5' DT DT DT 8 8 8 N 1 -4.87 0.80 105.90 101.03 A A A O4' C1' C2' DT DT DT 8 8 8 N 1 4.39 0.30 108.30 112.69 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 4.80 0.60 114.60 119.40 A A A N1 C2 N3 DT DT DT 8 8 8 N 1 -7.85 0.60 127.20 119.35 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 5.36 0.60 115.20 120.56 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -7.56 0.60 119.90 112.34 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 -4.23 0.60 122.90 118.67 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 15.62 1.20 119.70 135.32 A A A C3' O3' P DT DT DG 8 8 9 Y 1 9.62 1.20 110.70 120.32 A A A O5' P OP2 DG DG DG 9 9 9 N 1 -6.73 0.80 109.40 102.67 A A A O5' C5' C4' DG DG DG 9 9 9 N 1 -11.73 1.60 120.90 109.17 A A A P O5' C5' DG DG DG 9 9 9 N 1 -6.66 0.80 102.40 95.74 A A A C3' C2' C1' DG DG DG 9 9 9 N 1 7.73 0.30 108.30 116.03 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 3.36 0.50 111.50 114.86 A A A C5 C6 N1 DG DG DG 9 9 9 N 1 12.50 1.20 119.70 132.20 A A A C3' O3' P DG DG DG 9 9 10 Y 1 -6.24 0.80 109.40 103.16 A A A O5' C5' C4' DG DG DG 10 10 10 N 1 2.51 0.30 108.30 110.81 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -3.73 0.60 128.60 124.87 A A A C5 C6 O6 DG DG DG 10 10 10 N 1 31.51 1.20 119.70 151.21 A A A C3' O3' P DG DG DC 10 10 11 Y 1 -4.91 0.80 102.40 97.49 A A A C3' C2' C1' DC DC DC 11 11 11 N 1 16.00 1.20 119.70 135.70 A A A C3' O3' P DC DC DG 11 11 12 Y 1 14.77 1.10 110.50 125.27 A A A O3' P OP1 DC DG DG 11 12 12 Y 1 -15.80 1.50 119.60 103.80 A A A OP1 P OP2 DG DG DG 12 12 12 N 1 8.86 1.20 110.70 119.56 A A A O5' P OP2 DG DG DG 12 12 12 N 1 3.83 0.30 108.30 112.13 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 3.24 0.50 111.50 114.74 A A A C5 C6 N1 DG DG DG 12 12 12 N 1 8.19 1.10 110.50 118.69 B B B O3' P OP2 DC DG DG 13 14 14 Y 1 -10.84 1.50 119.60 108.76 B B B OP1 P OP2 DG DG DG 14 14 14 N 1 8.84 1.20 110.70 119.54 B B B O5' P OP1 DG DG DG 14 14 14 N 1 3.78 0.30 108.30 112.08 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -10.94 1.50 119.60 108.66 B B B OP1 P OP2 DC DC DC 15 15 15 N 1 -6.23 0.80 109.40 103.17 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 -11.20 1.60 120.90 109.70 B B B P O5' C5' DC DC DC 15 15 15 N 1 -26.81 1.20 119.70 92.89 B B B C3' O3' P DC DC DG 15 15 16 Y 1 -14.13 1.90 104.00 89.87 B B B O3' P O5' DC DG DG 15 16 16 Y 1 11.61 1.20 110.70 122.31 B B B O5' P OP2 DG DG DG 16 16 16 N 1 -6.02 0.80 109.40 103.38 B B B O5' C5' C4' DG DG DG 16 16 16 N 1 -4.78 0.70 102.20 97.42 B B B C4' C3' C2' DG DG DG 16 16 16 N 1 -7.40 0.80 102.40 95.00 B B B C3' C2' C1' DG DG DG 16 16 16 N 1 5.14 0.30 108.30 113.44 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 -4.14 0.60 128.60 124.46 B B B C5 C6 O6 DG DG DG 16 16 16 N 1 32.15 1.20 119.70 151.85 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -6.04 0.90 105.70 99.66 B B B O5' P OP1 DA DA DA 17 17 17 N 1 -7.28 0.80 109.40 102.12 B B B O5' C5' C4' DA DA DA 17 17 17 N 1 -11.09 1.60 120.90 109.81 B B B P O5' C5' DA DA DA 17 17 17 N 1 -6.20 0.80 102.40 96.20 B B B C3' C2' C1' DA DA DA 17 17 17 N 1 6.68 0.30 108.30 114.98 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -3.99 0.50 129.30 125.31 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 -13.30 1.90 104.00 90.70 B B B O3' P O5' DA DA DA 17 18 18 Y 1 1.91 0.30 108.30 110.21 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 15.28 1.20 119.70 134.98 B B B C3' O3' P DA DA DT 18 18 19 Y 1 -14.39 1.60 120.90 106.51 B B B P O5' C5' DT DT DT 19 19 19 N 1 -6.12 0.70 102.20 96.08 B B B C4' C3' C2' DT DT DT 19 19 19 N 1 3.49 0.30 108.30 111.79 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 4.39 0.60 114.60 118.99 B B B N1 C2 N3 DT DT DT 19 19 19 N 1 -5.61 0.60 127.20 121.59 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 -5.38 0.60 122.90 117.52 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 -13.35 2.20 105.20 91.85 B B B O3' P OP2 DT DT DT 19 20 20 Y 1 13.22 1.10 110.50 123.72 B B B O3' P OP1 DT DT DT 19 20 20 Y 1 -5.15 0.80 109.40 104.25 B B B O5' C5' C4' DT DT DT 20 20 20 N 1 10.02 0.30 108.30 118.32 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 5.54 0.60 114.60 120.14 B B B N1 C2 N3 DT DT DT 20 20 20 N 1 -8.03 0.60 127.20 119.17 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 4.79 0.60 115.20 119.99 B B B N3 C4 C5 DT DT DT 20 20 20 N 1 22.67 1.20 119.70 142.37 B B B C3' O3' P DT DT DG 20 20 21 Y 1 -12.02 1.50 119.60 107.58 B B B OP1 P OP2 DG DG DG 21 21 21 N 1 -11.63 1.00 110.10 98.47 B B B C1' O4' C4' DG DG DG 21 21 21 N 1 -7.76 0.80 105.90 98.14 B B B O4' C1' C2' DG DG DG 21 21 21 N 1 2.69 0.30 108.30 110.99 B B B O4' C1' N9 DG DG DG 21 21 21 N 1 -4.06 0.60 125.10 121.04 B B B C6 N1 C2 DG DG DG 21 21 21 N 1 4.01 0.50 111.50 115.51 B B B C5 C6 N1 DG DG DG 21 21 21 N 1 7.91 1.20 119.70 127.61 B B B C3' O3' P DG DG DG 21 21 22 Y 1 7.19 1.10 110.50 117.69 B B B O3' P OP1 DG DG DG 21 22 22 Y 1 -9.29 1.50 119.60 110.31 B B B OP1 P OP2 DG DG DG 22 22 22 N 1 -6.35 0.80 102.40 96.05 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 -4.98 0.80 105.90 100.92 B B B O4' C1' C2' DG DG DG 22 22 22 N 1 9.07 0.30 108.30 117.37 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 3.32 0.50 111.50 114.82 B B B C5 C6 N1 DG DG DG 22 22 22 N 1 -3.70 0.60 128.60 124.90 B B B C5 C6 O6 DG DG DG 22 22 22 N 1 12.06 1.20 119.70 131.76 B B B C3' O3' P DG DG DC 22 22 23 Y 1 -4.98 0.80 109.40 104.42 B B B O5' C5' C4' DC DC DC 23 23 23 N 1 -5.00 0.80 102.40 97.40 B B B C3' C2' C1' DC DC DC 23 23 23 N 1 9.00 0.30 108.30 117.30 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 3.11 0.50 119.90 123.01 B B B C2 N3 C4 DC DC DC 23 23 23 N 1 3.74 0.60 118.90 122.64 B B B N1 C2 O2 DC DC DC 23 23 23 N 1 -11.90 1.50 119.60 107.70 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 22.19 1.20 110.70 132.89 B B B O5' P OP1 DG DG DG 24 24 24 N 1 -5.50 0.80 105.90 100.40 B B B O4' C1' C2' DG DG DG 24 24 24 N 1 12.91 0.30 108.30 121.21 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 -5.22 0.60 128.60 123.38 B B B C5 C6 O6 DG DG DG 24 24 24 N 1 A A P O5' DC DC 3 3 -0.061 0.010 1.593 1.532 N 1 A A O3' P DT DT 7 8 -0.092 0.012 1.607 1.515 Y 1 A A P OP1 DT DT 8 8 0.108 0.017 1.485 1.593 N 1 A A P O5' DT DT 8 8 -0.136 0.010 1.593 1.457 N 1 B B C6 N1 DG DG 14 14 -0.042 0.007 1.391 1.349 N 1 B B N3 C4 DC DC 15 15 0.046 0.007 1.335 1.381 N 1 B B O3' P DC DG 15 16 0.183 0.012 1.607 1.790 Y 1 B B O3' P DA DA 17 18 0.090 0.012 1.607 1.697 Y 1 B B O4' C1' DG DG 21 21 0.076 0.011 1.420 1.496 N 1 A A O3' O DC HOH 11 83 1.13 1_555 2_664 1 A B O O HOH HOH 65 61 1.27 1_555 1_455 1 B A O2 O DC HOH 23 92 1.42 1_555 2_665 1 B A N3 O DG HOH 22 36 1.46 1_555 2_665 1 A B O O HOH HOH 63 64 1.53 1_555 1_455 1 A A O2 O DC HOH 3 25 1.57 1_555 2_665 1 B A N2 O DG HOH 22 25 1.59 1_555 2_665 1 B A O5' O DC HOH 13 78 1.64 1_555 4_455 1 B A C5' O DG HOH 24 81 1.71 1_555 2_665 1 A A C3' O DC HOH 11 83 1.78 1_555 2_664 1 A A C1' O DC HOH 3 41 1.80 1_555 2_665 1 A B O3' N2 DG DG 12 22 1.85 1_555 2_664 1 A A O4' O DG HOH 12 43 1.92 1_555 2_664 1 B A C2 O DC HOH 23 92 1.99 1_555 2_665 1 B A C4 O DG HOH 22 36 2.01 1_555 2_665 1 A B C4' O2 DG DC 12 23 2.06 1_555 2_664 1 A B OP2 O DG HOH 10 87 2.08 1_555 4_465 1 A A O O HOH HOH 31 79 2.11 1_555 3_645 1 A A O O HOH HOH 52 53 2.12 1_555 4_465 1 A A O2 O DC HOH 3 41 2.15 1_555 2_665 1 B A O3' O DC HOH 23 81 2.16 1_555 2_665 0.1880000 2.200 8.000 2365 1 2.000 TR isotropic TR isotropic 2.200 8.000 72 564 0 492 0 4.100 5.000 5.700 7.500 5.789 7.500 6.602 10.00 0.013 0.025 0.031 0.040 0.058 0.050 0.068 0.075 0.019 0.030 0.072 0.100 0.187 0.250 0.235 0.250 fix fix 2.200 1D80 8732 3811 1 refinement NUCLSQ CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 B DG 21 B O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 B DG 21 B N7 DG 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog TYPE_6_PAIR A DG 9 A N7 DG 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog TYPE_6_PAIR A DG 9 A O6 DG 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, MISMATCHED, DNA 1D80 PDB 1 1D80 1 12 1D80 1 12 1D80 A 1 1 12 13 24 1D80 13 24 1D80 B 1 1 12 19 P 21 21 21