0.039308
0.000000
0.000000
0.000000
0.024050
0.000000
0.000000
0.000000
0.015129
0.00000
0.00000
0.00000
Skelly, J.V.
Edwards, K.J.
Jenkins, T.C.
Neidle, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.440
41.580
66.100
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
90
804
808
10.1073/pnas.90.3.804
8430089
Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation.
1993
10.2210/pdb1d80/pdb
pdb_00001d80
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283.00
1
AREA DETECTOR
XENTRONICS
x-ray
1
1.0
ROTATING ANODE
ENRAF-NONIUS FR571
3703.416
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3')
2
syn
polymer
18.015
water
72
nat
water
no
no
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DG)(DG)(DC)(DG)
CGCGAATTGGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2.36
47.88
VAPOR DIFFUSION
7.00
pH 7.00, VAPOR DIFFUSION, temperature 279.00K
279.00
WATER
1
SPERMINE
1
MGCL2
1
NA CACODYLATE
1
WATER
2
MPD
2
2.934
1
19
A
1
B
24
-6.359
A_DC1:DG24_B
1
-9.431
0.139
0.253
-0.247
-2.708
1
19
A
2
B
23
0.348
A_DG2:DC23_B
2
-11.547
-0.072
0.021
-0.071
-0.104
1
19
A
3
B
22
-5.892
A_DC3:DG22_B
3
-7.275
-0.319
0.054
-0.162
-6.489
3
6
A
4
B
21
-87.164
A_DG4:DG21_B
4
-21.442
0.717
0.375
3.634
9.080
1
20
A
5
B
20
-4.218
A_DA5:DT20_B
5
-21.339
0.186
-0.265
0.028
2.936
1
20
A
6
B
19
-1.565
A_DA6:DT19_B
6
-19.904
-0.095
0.156
-0.076
-4.029
1
20
A
7
B
18
-4.551
A_DT7:DA18_B
7
-19.291
-0.148
0.063
-0.011
0.738
1
20
A
8
B
17
-6.424
A_DT8:DA17_B
8
-23.341
0.211
-0.067
-0.092
6.783
3
6
A
9
B
16
91.631
A_DG9:DG16_B
9
13.699
-0.868
0.144
-3.538
5.950
1
19
A
10
B
15
-4.800
A_DG10:DC15_B
10
-2.842
0.343
-0.149
-0.102
13.389
1
19
A
11
B
14
-3.411
A_DC11:DG14_B
11
-16.554
0.587
-0.043
-0.282
-5.622
1
19
A
12
B
13
-4.970
A_DG12:DC13_B
12
-5.995
0.078
-0.064
-0.119
3.494
39.898
A
A
1
2
5.940
B
B
24
23
3.530
4.042
-0.215
0.092
AA_DC1DG2:DC23DG24_BB
1
3.301
-4.851
39.569
-0.367
0.726
3.191
36.161
A
A
2
3
1.253
B
B
23
22
3.178
0.778
0.419
0.488
AA_DG2DC3:DG22DC23_BB
2
0.342
-0.550
36.151
0.680
-0.629
3.357
75.306
A
A
3
4
2.243
B
B
22
21
3.339
2.739
1.502
-0.924
AA_DC3DG4:DG21DG22_BB
3
2.979
-2.439
75.213
-0.841
-1.137
2.648
-9.386
A
A
4
5
-15.232
B
B
21
20
3.232
2.406
-0.677
1.933
AA_DG4DA5:DT20DG21_BB
4
3.395
21.495
-8.414
-16.660
2.703
3.174
35.872
A
A
5
6
3.316
B
B
20
19
3.204
2.038
-0.086
-0.318
AA_DA5DA6:DT19DT20_BB
5
-3.642
5.926
35.636
-0.802
-0.370
3.496
33.524
A
A
6
7
4.249
B
B
19
18
3.547
2.448
0.231
-0.665
AA_DA6DT7:DA18DT19_BB
6
0.935
-1.622
33.424
-1.588
-0.234
3.204
37.882
A
A
7
8
-4.494
B
B
18
17
3.164
-2.914
-0.452
-0.446
AA_DT7DT8:DA17DA18_BB
7
-1.531
2.361
37.744
-0.322
0.504
-0.323
175.529
A
A
8
9
6.885
B
B
17
16
1.754
13.525
0.678
-3.593
AA_DT8DG9:DG16DA17_BB
8
-174.744
88.956
38.372
-1.837
-0.847
1.341
-175.682
A
A
9
10
57.163
B
B
16
15
-0.136
-111.796
-3.030
-1.540
AA_DG9DG10:DC15DG16_BB
9
135.502
69.285
-9.426
1.124
-1.088
3.115
39.368
A
A
10
11
-6.849
B
B
15
14
3.171
-4.601
-0.637
0.633
AA_DG10DC11:DG14DC15_BB
10
-2.686
3.999
39.020
1.466
0.639
3.953
38.265
A
A
11
12
4.036
B
B
14
13
3.952
2.643
-0.212
0.152
AA_DC11DG12:DC13DG14_BB
11
-0.091
0.139
38.177
-0.170
0.309
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1993-07-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1992-06-17
REL
REL
HOH
water
HOH
25
2
HOH
HOH
25
A
HOH
27
2
HOH
HOH
27
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
58
2
HOH
HOH
58
A
HOH
59
2
HOH
HOH
59
A
HOH
63
2
HOH
HOH
63
A
HOH
65
2
HOH
HOH
65
A
HOH
66
2
HOH
HOH
66
A
HOH
68
2
HOH
HOH
68
A
HOH
69
2
HOH
HOH
69
A
HOH
70
2
HOH
HOH
70
A
HOH
75
2
HOH
HOH
75
A
HOH
76
2
HOH
HOH
76
A
HOH
77
2
HOH
HOH
77
A
HOH
78
2
HOH
HOH
78
A
HOH
79
2
HOH
HOH
79
A
HOH
80
2
HOH
HOH
80
A
HOH
81
2
HOH
HOH
81
A
HOH
83
2
HOH
HOH
83
A
HOH
84
2
HOH
HOH
84
A
HOH
92
2
HOH
HOH
92
A
HOH
93
2
HOH
HOH
93
A
HOH
94
2
HOH
HOH
94
A
HOH
96
2
HOH
HOH
96
A
HOH
26
2
HOH
HOH
26
B
HOH
28
2
HOH
HOH
28
B
HOH
33
2
HOH
HOH
33
B
HOH
34
2
HOH
HOH
34
B
HOH
35
2
HOH
HOH
35
B
HOH
40
2
HOH
HOH
40
B
HOH
47
2
HOH
HOH
47
B
HOH
48
2
HOH
HOH
48
B
HOH
49
2
HOH
HOH
49
B
HOH
50
2
HOH
HOH
50
B
HOH
56
2
HOH
HOH
56
B
HOH
57
2
HOH
HOH
57
B
HOH
60
2
HOH
HOH
60
B
HOH
61
2
HOH
HOH
61
B
HOH
62
2
HOH
HOH
62
B
HOH
64
2
HOH
HOH
64
B
HOH
67
2
HOH
HOH
67
B
HOH
71
2
HOH
HOH
71
B
HOH
72
2
HOH
HOH
72
B
HOH
73
2
HOH
HOH
73
B
HOH
74
2
HOH
HOH
74
B
HOH
82
2
HOH
HOH
82
B
HOH
85
2
HOH
HOH
85
B
HOH
86
2
HOH
HOH
86
B
HOH
87
2
HOH
HOH
87
B
HOH
88
2
HOH
HOH
88
B
HOH
89
2
HOH
HOH
89
B
HOH
90
2
HOH
HOH
90
B
HOH
91
2
HOH
HOH
91
B
HOH
95
2
HOH
HOH
95
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
G
21
n
9
DG
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
N9
O
DG
HOH
2
59
0.29
1
A
A
C8
O
DG
HOH
2
59
1.13
1
A
A
O4'
O
DC
HOH
11
93
1.23
1
A
A
O2
O
DC
HOH
1
37
1.29
1
A
A
C4
O
DG
HOH
2
59
1.42
1
B
B
N3
O
DC
HOH
23
60
1.51
1
A
B
N1
O
DG
HOH
2
60
1.56
1
B
B
O5'
O
DC
HOH
15
67
1.63
1
A
A
O6
O
DG
HOH
2
69
1.68
1
A
A
C1'
O
DG
HOH
2
59
1.69
1
A
A
OP1
O
DC
HOH
3
68
1.72
1
B
B
C4'
O
DC
HOH
15
67
1.75
1
B
B
C5'
O
DC
HOH
15
67
1.75
1
A
A
N7
O
DG
HOH
2
69
1.86
1
A
A
C1'
O
DC
HOH
11
93
1.86
1
B
B
O4'
O
DC
HOH
15
67
1.89
1
A
A
C2
O
DC
HOH
1
37
1.91
1
A
A
OP1
O
DG
HOH
9
52
1.93
1
A
A
C6
O
DG
HOH
2
69
1.93
1
A
A
C5
O
DG
HOH
2
69
1.98
1
A
A
N7
O
DG
HOH
2
59
2.01
1
B
B
C3'
O
DC
HOH
15
67
2.03
1
A
A
N1
O
DC
HOH
11
93
2.05
1
B
A
N2
O
DG
HOH
24
37
2.05
1
A
A
C5
O
DG
HOH
2
59
2.07
1
A
A
N2
O
DG
HOH
2
43
2.09
1
A
A
P
O
DC
HOH
3
68
2.14
1
A
A
C4'
O
DC
HOH
11
93
2.18
1
B
B
O3'
P
DC
DG
15
16
1.79
1
-4.81
0.80
109.40
104.59
A
A
A
O5'
C5'
C4'
DC
DC
DC
1
1
1
N
1
-6.99
0.80
102.40
95.41
A
A
A
C3'
C2'
C1'
DC
DC
DC
1
1
1
N
1
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-8.44
0.80
109.40
100.96
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.90
0.60
125.10
120.20
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
3.62
0.50
111.50
115.12
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-4.79
0.60
119.90
115.11
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-10.55
1.50
119.60
109.05
A
A
A
OP1
P
OP2
DC
DC
DC
3
3
3
N
1
16.59
1.60
120.90
137.49
A
A
A
P
O5'
C5'
DC
DC
DC
3
3
3
N
1
-6.75
1.00
110.10
103.35
A
A
A
C1'
O4'
C4'
DC
DC
DC
3
3
3
N
1
-8.02
1.20
119.70
111.68
A
A
A
C3'
O3'
P
DC
DC
DG
3
3
4
Y
1
-7.33
0.80
109.40
102.07
A
A
A
O5'
C5'
C4'
DG
DG
DG
4
4
4
N
1
-6.65
0.80
102.40
95.75
A
A
A
C3'
C2'
C1'
DG
DG
DG
4
4
4
N
1
10.21
0.30
108.30
118.51
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-5.48
0.60
125.10
119.62
A
A
A
C6
N1
C2
DG
DG
DG
4
4
4
N
1
4.88
0.50
111.50
116.38
A
A
A
C5
C6
N1
DG
DG
DG
4
4
4
N
1
-5.37
0.70
119.90
114.53
A
A
A
N3
C2
N2
DG
DG
DG
4
4
4
N
1
-5.48
0.60
128.60
123.12
A
A
A
C5
C6
O6
DG
DG
DG
4
4
4
N
1
8.68
1.20
110.70
119.38
A
A
A
O5'
P
OP2
DA
DA
DA
5
5
5
N
1
-4.96
0.70
102.20
97.24
A
A
A
C4'
C3'
C2'
DA
DA
DA
5
5
5
N
1
6.99
0.30
108.30
115.29
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
35.95
1.20
119.70
155.65
A
A
A
C3'
O3'
P
DA
DA
DA
5
5
6
Y
1
7.21
1.10
110.50
117.71
A
A
A
O3'
P
OP1
DA
DA
DA
5
6
6
Y
1
4.32
0.60
118.60
122.92
A
A
A
C6
N1
C2
DA
DA
DA
6
6
6
N
1
-3.05
0.50
129.30
126.25
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
1
-4.29
0.50
117.70
113.41
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
1
7.67
1.10
110.50
118.17
A
A
A
O3'
P
OP1
DA
DT
DT
6
7
7
Y
1
-6.94
0.80
109.40
102.46
A
A
A
O5'
C5'
C4'
DT
DT
DT
7
7
7
N
1
5.21
0.60
114.60
119.81
A
A
A
N1
C2
N3
DT
DT
DT
7
7
7
N
1
-6.81
0.60
127.20
120.39
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
4.21
0.60
115.20
119.41
A
A
A
N3
C4
C5
DT
DT
DT
7
7
7
N
1
9.40
1.20
119.70
129.10
A
A
A
C3'
O3'
P
DT
DT
DT
7
7
8
Y
1
17.26
1.90
104.00
121.26
A
A
A
O3'
P
O5'
DT
DT
DT
7
8
8
Y
1
-13.69
2.20
105.20
91.51
A
A
A
O3'
P
OP2
DT
DT
DT
7
8
8
Y
1
-13.57
1.50
119.60
106.03
A
A
A
OP1
P
OP2
DT
DT
DT
8
8
8
N
1
19.03
1.60
120.90
139.93
A
A
A
P
O5'
C5'
DT
DT
DT
8
8
8
N
1
-4.87
0.80
105.90
101.03
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
1
4.39
0.30
108.30
112.69
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
4.80
0.60
114.60
119.40
A
A
A
N1
C2
N3
DT
DT
DT
8
8
8
N
1
-7.85
0.60
127.20
119.35
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
5.36
0.60
115.20
120.56
A
A
A
N3
C4
C5
DT
DT
DT
8
8
8
N
1
-7.56
0.60
119.90
112.34
A
A
A
N3
C4
O4
DT
DT
DT
8
8
8
N
1
-4.23
0.60
122.90
118.67
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
15.62
1.20
119.70
135.32
A
A
A
C3'
O3'
P
DT
DT
DG
8
8
9
Y
1
9.62
1.20
110.70
120.32
A
A
A
O5'
P
OP2
DG
DG
DG
9
9
9
N
1
-6.73
0.80
109.40
102.67
A
A
A
O5'
C5'
C4'
DG
DG
DG
9
9
9
N
1
-11.73
1.60
120.90
109.17
A
A
A
P
O5'
C5'
DG
DG
DG
9
9
9
N
1
-6.66
0.80
102.40
95.74
A
A
A
C3'
C2'
C1'
DG
DG
DG
9
9
9
N
1
7.73
0.30
108.30
116.03
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
3.36
0.50
111.50
114.86
A
A
A
C5
C6
N1
DG
DG
DG
9
9
9
N
1
12.50
1.20
119.70
132.20
A
A
A
C3'
O3'
P
DG
DG
DG
9
9
10
Y
1
-6.24
0.80
109.40
103.16
A
A
A
O5'
C5'
C4'
DG
DG
DG
10
10
10
N
1
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-3.73
0.60
128.60
124.87
A
A
A
C5
C6
O6
DG
DG
DG
10
10
10
N
1
31.51
1.20
119.70
151.21
A
A
A
C3'
O3'
P
DG
DG
DC
10
10
11
Y
1
-4.91
0.80
102.40
97.49
A
A
A
C3'
C2'
C1'
DC
DC
DC
11
11
11
N
1
16.00
1.20
119.70
135.70
A
A
A
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
14.77
1.10
110.50
125.27
A
A
A
O3'
P
OP1
DC
DG
DG
11
12
12
Y
1
-15.80
1.50
119.60
103.80
A
A
A
OP1
P
OP2
DG
DG
DG
12
12
12
N
1
8.86
1.20
110.70
119.56
A
A
A
O5'
P
OP2
DG
DG
DG
12
12
12
N
1
3.83
0.30
108.30
112.13
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.24
0.50
111.50
114.74
A
A
A
C5
C6
N1
DG
DG
DG
12
12
12
N
1
8.19
1.10
110.50
118.69
B
B
B
O3'
P
OP2
DC
DG
DG
13
14
14
Y
1
-10.84
1.50
119.60
108.76
B
B
B
OP1
P
OP2
DG
DG
DG
14
14
14
N
1
8.84
1.20
110.70
119.54
B
B
B
O5'
P
OP1
DG
DG
DG
14
14
14
N
1
3.78
0.30
108.30
112.08
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
-10.94
1.50
119.60
108.66
B
B
B
OP1
P
OP2
DC
DC
DC
15
15
15
N
1
-6.23
0.80
109.40
103.17
B
B
B
O5'
C5'
C4'
DC
DC
DC
15
15
15
N
1
-11.20
1.60
120.90
109.70
B
B
B
P
O5'
C5'
DC
DC
DC
15
15
15
N
1
-26.81
1.20
119.70
92.89
B
B
B
C3'
O3'
P
DC
DC
DG
15
15
16
Y
1
-14.13
1.90
104.00
89.87
B
B
B
O3'
P
O5'
DC
DG
DG
15
16
16
Y
1
11.61
1.20
110.70
122.31
B
B
B
O5'
P
OP2
DG
DG
DG
16
16
16
N
1
-6.02
0.80
109.40
103.38
B
B
B
O5'
C5'
C4'
DG
DG
DG
16
16
16
N
1
-4.78
0.70
102.20
97.42
B
B
B
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
1
-7.40
0.80
102.40
95.00
B
B
B
C3'
C2'
C1'
DG
DG
DG
16
16
16
N
1
5.14
0.30
108.30
113.44
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
-4.14
0.60
128.60
124.46
B
B
B
C5
C6
O6
DG
DG
DG
16
16
16
N
1
32.15
1.20
119.70
151.85
B
B
B
C3'
O3'
P
DG
DG
DA
16
16
17
Y
1
-6.04
0.90
105.70
99.66
B
B
B
O5'
P
OP1
DA
DA
DA
17
17
17
N
1
-7.28
0.80
109.40
102.12
B
B
B
O5'
C5'
C4'
DA
DA
DA
17
17
17
N
1
-11.09
1.60
120.90
109.81
B
B
B
P
O5'
C5'
DA
DA
DA
17
17
17
N
1
-6.20
0.80
102.40
96.20
B
B
B
C3'
C2'
C1'
DA
DA
DA
17
17
17
N
1
6.68
0.30
108.30
114.98
B
B
B
O4'
C1'
N9
DA
DA
DA
17
17
17
N
1
-3.99
0.50
129.30
125.31
B
B
B
N1
C2
N3
DA
DA
DA
17
17
17
N
1
-13.30
1.90
104.00
90.70
B
B
B
O3'
P
O5'
DA
DA
DA
17
18
18
Y
1
1.91
0.30
108.30
110.21
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
1
15.28
1.20
119.70
134.98
B
B
B
C3'
O3'
P
DA
DA
DT
18
18
19
Y
1
-14.39
1.60
120.90
106.51
B
B
B
P
O5'
C5'
DT
DT
DT
19
19
19
N
1
-6.12
0.70
102.20
96.08
B
B
B
C4'
C3'
C2'
DT
DT
DT
19
19
19
N
1
3.49
0.30
108.30
111.79
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
4.39
0.60
114.60
118.99
B
B
B
N1
C2
N3
DT
DT
DT
19
19
19
N
1
-5.61
0.60
127.20
121.59
B
B
B
C2
N3
C4
DT
DT
DT
19
19
19
N
1
-5.38
0.60
122.90
117.52
B
B
B
C6
C5
C7
DT
DT
DT
19
19
19
N
1
-13.35
2.20
105.20
91.85
B
B
B
O3'
P
OP2
DT
DT
DT
19
20
20
Y
1
13.22
1.10
110.50
123.72
B
B
B
O3'
P
OP1
DT
DT
DT
19
20
20
Y
1
-5.15
0.80
109.40
104.25
B
B
B
O5'
C5'
C4'
DT
DT
DT
20
20
20
N
1
10.02
0.30
108.30
118.32
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
1
5.54
0.60
114.60
120.14
B
B
B
N1
C2
N3
DT
DT
DT
20
20
20
N
1
-8.03
0.60
127.20
119.17
B
B
B
C2
N3
C4
DT
DT
DT
20
20
20
N
1
4.79
0.60
115.20
119.99
B
B
B
N3
C4
C5
DT
DT
DT
20
20
20
N
1
22.67
1.20
119.70
142.37
B
B
B
C3'
O3'
P
DT
DT
DG
20
20
21
Y
1
-12.02
1.50
119.60
107.58
B
B
B
OP1
P
OP2
DG
DG
DG
21
21
21
N
1
-11.63
1.00
110.10
98.47
B
B
B
C1'
O4'
C4'
DG
DG
DG
21
21
21
N
1
-7.76
0.80
105.90
98.14
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
1
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
-4.06
0.60
125.10
121.04
B
B
B
C6
N1
C2
DG
DG
DG
21
21
21
N
1
4.01
0.50
111.50
115.51
B
B
B
C5
C6
N1
DG
DG
DG
21
21
21
N
1
7.91
1.20
119.70
127.61
B
B
B
C3'
O3'
P
DG
DG
DG
21
21
22
Y
1
7.19
1.10
110.50
117.69
B
B
B
O3'
P
OP1
DG
DG
DG
21
22
22
Y
1
-9.29
1.50
119.60
110.31
B
B
B
OP1
P
OP2
DG
DG
DG
22
22
22
N
1
-6.35
0.80
102.40
96.05
B
B
B
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
-4.98
0.80
105.90
100.92
B
B
B
O4'
C1'
C2'
DG
DG
DG
22
22
22
N
1
9.07
0.30
108.30
117.37
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
3.32
0.50
111.50
114.82
B
B
B
C5
C6
N1
DG
DG
DG
22
22
22
N
1
-3.70
0.60
128.60
124.90
B
B
B
C5
C6
O6
DG
DG
DG
22
22
22
N
1
12.06
1.20
119.70
131.76
B
B
B
C3'
O3'
P
DG
DG
DC
22
22
23
Y
1
-4.98
0.80
109.40
104.42
B
B
B
O5'
C5'
C4'
DC
DC
DC
23
23
23
N
1
-5.00
0.80
102.40
97.40
B
B
B
C3'
C2'
C1'
DC
DC
DC
23
23
23
N
1
9.00
0.30
108.30
117.30
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
1
3.11
0.50
119.90
123.01
B
B
B
C2
N3
C4
DC
DC
DC
23
23
23
N
1
3.74
0.60
118.90
122.64
B
B
B
N1
C2
O2
DC
DC
DC
23
23
23
N
1
-11.90
1.50
119.60
107.70
B
B
B
OP1
P
OP2
DG
DG
DG
24
24
24
N
1
22.19
1.20
110.70
132.89
B
B
B
O5'
P
OP1
DG
DG
DG
24
24
24
N
1
-5.50
0.80
105.90
100.40
B
B
B
O4'
C1'
C2'
DG
DG
DG
24
24
24
N
1
12.91
0.30
108.30
121.21
B
B
B
O4'
C1'
N9
DG
DG
DG
24
24
24
N
1
-5.22
0.60
128.60
123.38
B
B
B
C5
C6
O6
DG
DG
DG
24
24
24
N
1
A
A
P
O5'
DC
DC
3
3
-0.061
0.010
1.593
1.532
N
1
A
A
O3'
P
DT
DT
7
8
-0.092
0.012
1.607
1.515
Y
1
A
A
P
OP1
DT
DT
8
8
0.108
0.017
1.485
1.593
N
1
A
A
P
O5'
DT
DT
8
8
-0.136
0.010
1.593
1.457
N
1
B
B
C6
N1
DG
DG
14
14
-0.042
0.007
1.391
1.349
N
1
B
B
N3
C4
DC
DC
15
15
0.046
0.007
1.335
1.381
N
1
B
B
O3'
P
DC
DG
15
16
0.183
0.012
1.607
1.790
Y
1
B
B
O3'
P
DA
DA
17
18
0.090
0.012
1.607
1.697
Y
1
B
B
O4'
C1'
DG
DG
21
21
0.076
0.011
1.420
1.496
N
1
A
A
O3'
O
DC
HOH
11
83
1.13
1_555
2_664
1
A
B
O
O
HOH
HOH
65
61
1.27
1_555
1_455
1
B
A
O2
O
DC
HOH
23
92
1.42
1_555
2_665
1
B
A
N3
O
DG
HOH
22
36
1.46
1_555
2_665
1
A
B
O
O
HOH
HOH
63
64
1.53
1_555
1_455
1
A
A
O2
O
DC
HOH
3
25
1.57
1_555
2_665
1
B
A
N2
O
DG
HOH
22
25
1.59
1_555
2_665
1
B
A
O5'
O
DC
HOH
13
78
1.64
1_555
4_455
1
B
A
C5'
O
DG
HOH
24
81
1.71
1_555
2_665
1
A
A
C3'
O
DC
HOH
11
83
1.78
1_555
2_664
1
A
A
C1'
O
DC
HOH
3
41
1.80
1_555
2_665
1
A
B
O3'
N2
DG
DG
12
22
1.85
1_555
2_664
1
A
A
O4'
O
DG
HOH
12
43
1.92
1_555
2_664
1
B
A
C2
O
DC
HOH
23
92
1.99
1_555
2_665
1
B
A
C4
O
DG
HOH
22
36
2.01
1_555
2_665
1
A
B
C4'
O2
DG
DC
12
23
2.06
1_555
2_664
1
A
B
OP2
O
DG
HOH
10
87
2.08
1_555
4_465
1
A
A
O
O
HOH
HOH
31
79
2.11
1_555
3_645
1
A
A
O
O
HOH
HOH
52
53
2.12
1_555
4_465
1
A
A
O2
O
DC
HOH
3
41
2.15
1_555
2_665
1
B
A
O3'
O
DC
HOH
23
81
2.16
1_555
2_665
0.1880000
2.200
8.000
2365
1
2.000
TR
isotropic
TR
isotropic
2.200
8.000
72
564
0
492
0
4.100
5.000
5.700
7.500
5.789
7.500
6.602
10.00
0.013
0.025
0.031
0.040
0.058
0.050
0.068
0.075
0.019
0.030
0.072
0.100
0.187
0.250
0.235
0.250
fix
fix
2.200
1D80
8732
3811
1
refinement
NUCLSQ
CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION
1
N
N
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
B
DG
21
B
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
B
DG
21
B
N7
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N7
DG
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
O6
DG
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, MISMATCHED, DNA
1D80
PDB
1
1D80
1
12
1D80
1
12
1D80
A
1
1
12
13
24
1D80
13
24
1D80
B
1
1
12
19
P 21 21 21