0.023496
0.000000
0.000000
0.000000
0.023496
0.000000
0.000000
0.000000
0.040634
0.00000
0.00000
0.00000
Cervi, A.
Langlois D'Estaintot, B.
Hunter, W.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.560
42.560
24.610
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
48
714
719
-1
Crystal and Molecular Structure of d(GTCTAGAC)
1992
10.2210/pdb1d82/pdb
pdb_00001d82
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295.00
1
DIFFRACTOMETER
RIGAKU AFC-5
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
2426.617
DNA (5'-D(*GP*TP*CP*TP*AP*GP*AP*C)-3')
1
syn
polymer
18.015
water
3
nat
water
no
no
(DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC)
GTCTAGAC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.30
46.43
VAPOR DIFFUSION
6.80
pH 6.80, VAPOR DIFFUSION, temperature 295.00K
295.00
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE_HCL
1
WATER
2
MPD
2
-8.200
1
19
A
1
A
8
5.107
A_DG1:DC8_A
1
-10.434
-1.032
-0.233
-0.142
10.717
1
20
A
2
A
7
3.672
A_DT2:DA7_A
2
-13.048
-0.098
-0.271
-0.094
1.366
1
19
A
3
A
6
7.368
A_DC3:DG6_A
3
-8.921
0.640
0.039
-0.349
-2.409
1
20
A
4
A
5
-5.261
A_DT4:DA5_A
4
-11.731
0.098
0.347
-0.111
2.409
1
20
A
5
A
4
-5.261
A_DA5:DT4_A
5
-11.731
-0.098
0.347
-0.111
-1.366
1
19
A
6
A
3
7.368
A_DG6:DC3_A
6
-8.921
-0.640
0.039
-0.349
-10.717
1
20
A
7
A
2
3.672
A_DA7:DT2_A
7
-13.048
0.098
-0.271
-0.094
8.200
1
19
A
8
A
1
5.107
A_DC8:DG1_A
8
-10.434
1.032
-0.233
-0.142
2.486
38.381
A
A
1
2
18.020
A
A
8
7
2.900
11.670
0.624
-0.887
AA_DG1DT2:DA7DC8_AA
1
-1.513
2.337
36.597
-2.580
-1.109
3.081
39.100
A
A
2
3
17.424
A
A
7
6
3.598
11.502
0.061
-1.301
AA_DT2DC3:DG6DA7_AA
2
0.190
-0.288
37.433
-3.389
-0.068
3.239
32.357
A
A
3
4
4.510
A
A
6
5
3.363
2.511
-0.317
-1.570
AA_DC3DT4:DA5DG6_AA
3
-0.512
0.919
32.258
-3.265
0.477
2.675
24.613
A
A
4
5
14.598
A
A
5
4
3.184
6.159
0.000
-1.665
AA_DT4DA5:DT4DA5_AA
4
0.000
0.000
23.841
-5.628
0.000
3.239
32.357
A
A
5
6
4.510
A
A
4
3
3.363
2.511
0.317
-1.570
AA_DA5DG6:DC3DT4_AA
5
0.512
-0.919
32.258
-3.265
-0.477
3.081
39.100
A
A
6
7
17.424
A
A
3
2
3.598
11.502
-0.061
-1.301
AA_DG6DA7:DT2DC3_AA
6
-0.190
0.288
37.433
-3.389
0.068
2.486
38.381
A
A
7
8
18.020
A
A
2
1
2.900
11.670
-0.624
-0.887
AA_DA7DC8:DG1DT2_AA
7
1.513
-2.337
36.597
-2.580
1.109
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1992-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1992-06-29
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
C
3
n
3
DC
3
A
T
4
n
4
DT
4
A
A
5
n
5
DA
5
A
G
6
n
6
DG
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
9.25
1.20
110.70
119.95
A
A
A
O5'
P
OP1
DT
DT
DT
2
2
2
N
1
7.20
1.20
110.70
117.90
A
A
A
O5'
P
OP2
DT
DT
DT
2
2
2
N
1
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
-4.87
0.60
127.20
122.33
A
A
A
C2
N3
C4
DT
DT
DT
2
2
2
N
1
4.15
0.60
115.20
119.35
A
A
A
N3
C4
C5
DT
DT
DT
2
2
2
N
1
-3.71
0.60
119.90
116.19
A
A
A
N3
C4
O4
DT
DT
DT
2
2
2
N
1
-12.10
1.60
120.90
108.80
A
A
A
P
O5'
C5'
DC
DC
DC
3
3
3
N
1
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-4.78
0.60
127.20
122.42
A
A
A
C2
N3
C4
DT
DT
DT
4
4
4
N
1
4.41
0.60
115.20
119.61
A
A
A
N3
C4
C5
DT
DT
DT
4
4
4
N
1
-7.29
0.80
109.40
102.11
A
A
A
O5'
C5'
C4'
DA
DA
DA
5
5
5
N
1
-13.99
1.60
120.90
106.91
A
A
A
P
O5'
C5'
DA
DA
DA
5
5
5
N
1
4.83
0.30
108.30
113.13
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
-4.28
0.70
108.00
103.72
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-8.94
1.20
119.70
110.76
A
A
A
C3'
O3'
P
DG
DG
DA
6
6
7
Y
1
-3.32
0.50
129.30
125.98
A
A
A
N1
C2
N3
DA
DA
DA
7
7
7
N
1
10.47
1.20
119.70
130.17
A
A
A
C3'
O3'
P
DA
DA
DC
7
7
8
Y
1
-8.24
0.80
109.40
101.16
A
A
A
O5'
C5'
C4'
DC
DC
DC
8
8
8
N
1
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
A
A
C5'
O
DT
HOH
2
11
1.67
1_555
3_544
1
A
A
C4'
O
DT
HOH
2
11
1.76
1_555
3_544
1
A
A
O4'
O
DT
HOH
2
11
2.02
1_555
3_544
0.2110000
2.500
6.000
801
1
1.000
TR
isotropic
TR
isotropic
2.500
6.000
3
164
0
161
0
0.011
0.023
0.031
0.044
fix
fix
2.500
1D82
1861
1757
1.000
1
refinement
NUCLSQ
CRYSTAL AND MOLECULAR STRUCTURE OF D(GTCTAGAC)
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
7_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
A
DA
7
A
N1
DA
7
7_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
A
DA
7
A
N6
DA
7
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
A
DG
6
A
N1
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
A
DG
6
A
O6
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
A
DG
6
A
N2
DG
6
7_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
5
A
N1
DA
5
7_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
5
A
N6
DA
5
7_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
A
DT
4
A
N3
DT
4
7_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
A
DT
4
A
O4
DT
4
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
3
A
N3
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
3
A
O2
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
3
A
N4
DC
3
7_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
A
DT
2
A
N3
DT
2
7_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
A
DT
2
A
O4
DT
2
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
7_555
DNA
A-DNA, DOUBLE HELIX, DNA
1D82
PDB
1
1D82
1
8
1D82
1
8
1D82
A
1
1
8
96
P 43 21 2