0.023496 0.000000 0.000000 0.000000 0.023496 0.000000 0.000000 0.000000 0.040634 0.00000 0.00000 0.00000 Cervi, A. Langlois D'Estaintot, B. Hunter, W.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.560 42.560 24.610 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 48 714 719 -1 Crystal and Molecular Structure of d(GTCTAGAC) 1992 10.2210/pdb1d82/pdb pdb_00001d82 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295.00 1 DIFFRACTOMETER RIGAKU AFC-5 x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 2426.617 DNA (5'-D(*GP*TP*CP*TP*AP*GP*AP*C)-3') 1 syn polymer 18.015 water 3 nat water no no (DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC) GTCTAGAC A polydeoxyribonucleotide n n n n n n n n 2.30 46.43 VAPOR DIFFUSION 6.80 pH 6.80, VAPOR DIFFUSION, temperature 295.00K 295.00 WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 WATER 2 MPD 2 -8.200 1 19 A 1 A 8 5.107 A_DG1:DC8_A 1 -10.434 -1.032 -0.233 -0.142 10.717 1 20 A 2 A 7 3.672 A_DT2:DA7_A 2 -13.048 -0.098 -0.271 -0.094 1.366 1 19 A 3 A 6 7.368 A_DC3:DG6_A 3 -8.921 0.640 0.039 -0.349 -2.409 1 20 A 4 A 5 -5.261 A_DT4:DA5_A 4 -11.731 0.098 0.347 -0.111 2.409 1 20 A 5 A 4 -5.261 A_DA5:DT4_A 5 -11.731 -0.098 0.347 -0.111 -1.366 1 19 A 6 A 3 7.368 A_DG6:DC3_A 6 -8.921 -0.640 0.039 -0.349 -10.717 1 20 A 7 A 2 3.672 A_DA7:DT2_A 7 -13.048 0.098 -0.271 -0.094 8.200 1 19 A 8 A 1 5.107 A_DC8:DG1_A 8 -10.434 1.032 -0.233 -0.142 2.486 38.381 A A 1 2 18.020 A A 8 7 2.900 11.670 0.624 -0.887 AA_DG1DT2:DA7DC8_AA 1 -1.513 2.337 36.597 -2.580 -1.109 3.081 39.100 A A 2 3 17.424 A A 7 6 3.598 11.502 0.061 -1.301 AA_DT2DC3:DG6DA7_AA 2 0.190 -0.288 37.433 -3.389 -0.068 3.239 32.357 A A 3 4 4.510 A A 6 5 3.363 2.511 -0.317 -1.570 AA_DC3DT4:DA5DG6_AA 3 -0.512 0.919 32.258 -3.265 0.477 2.675 24.613 A A 4 5 14.598 A A 5 4 3.184 6.159 0.000 -1.665 AA_DT4DA5:DT4DA5_AA 4 0.000 0.000 23.841 -5.628 0.000 3.239 32.357 A A 5 6 4.510 A A 4 3 3.363 2.511 0.317 -1.570 AA_DA5DG6:DC3DT4_AA 5 0.512 -0.919 32.258 -3.265 -0.477 3.081 39.100 A A 6 7 17.424 A A 3 2 3.598 11.502 -0.061 -1.301 AA_DG6DA7:DT2DC3_AA 6 -0.190 0.288 37.433 -3.389 0.068 2.486 38.381 A A 7 8 18.020 A A 2 1 2.900 11.670 -0.624 -0.887 AA_DA7DC8:DG1DT2_AA 7 1.513 -2.337 36.597 -2.580 1.109 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1992-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-06-29 REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A G 1 n 1 DG 1 A T 2 n 2 DT 2 A C 3 n 3 DC 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A G 6 n 6 DG 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 9.25 1.20 110.70 119.95 A A A O5' P OP1 DT DT DT 2 2 2 N 1 7.20 1.20 110.70 117.90 A A A O5' P OP2 DT DT DT 2 2 2 N 1 2.64 0.30 108.30 110.94 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -4.87 0.60 127.20 122.33 A A A C2 N3 C4 DT DT DT 2 2 2 N 1 4.15 0.60 115.20 119.35 A A A N3 C4 C5 DT DT DT 2 2 2 N 1 -3.71 0.60 119.90 116.19 A A A N3 C4 O4 DT DT DT 2 2 2 N 1 -12.10 1.60 120.90 108.80 A A A P O5' C5' DC DC DC 3 3 3 N 1 3.01 0.30 108.30 111.31 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -4.78 0.60 127.20 122.42 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 4.41 0.60 115.20 119.61 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 -7.29 0.80 109.40 102.11 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 -13.99 1.60 120.90 106.91 A A A P O5' C5' DA DA DA 5 5 5 N 1 4.83 0.30 108.30 113.13 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -4.28 0.70 108.00 103.72 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -8.94 1.20 119.70 110.76 A A A C3' O3' P DG DG DA 6 6 7 Y 1 -3.32 0.50 129.30 125.98 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 10.47 1.20 119.70 130.17 A A A C3' O3' P DA DA DC 7 7 8 Y 1 -8.24 0.80 109.40 101.16 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 2.08 0.30 108.30 110.38 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 A A C5' O DT HOH 2 11 1.67 1_555 3_544 1 A A C4' O DT HOH 2 11 1.76 1_555 3_544 1 A A O4' O DT HOH 2 11 2.02 1_555 3_544 0.2110000 2.500 6.000 801 1 1.000 TR isotropic TR isotropic 2.500 6.000 3 164 0 161 0 0.011 0.023 0.031 0.044 fix fix 2.500 1D82 1861 1757 1.000 1 refinement NUCLSQ CRYSTAL AND MOLECULAR STRUCTURE OF D(GTCTAGAC) 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 7_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 7_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 7_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 6 A N1 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 6 A O6 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 6 A N2 DG 6 7_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 5 A N1 DA 5 7_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 5 A N6 DA 5 7_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 4 A N3 DT 4 7_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 4 A O4 DT 4 7_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 3 A N3 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 3 A O2 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 3 A N4 DC 3 7_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 7_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 7_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 1D82 PDB 1 1D82 1 8 1D82 1 8 1D82 A 1 1 8 96 P 43 21 2