22.25 7.231 -2.196 -5.399 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 15.86 6.950 -3.464 -4.723 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 15.20 8.299 -4.018 -4.302 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 10.85 9.257 -3.779 -5.318 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 15.62 8.912 -3.354 -3.074 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 20.67 8.397 -3.826 -1.833 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 12.71 10.385 -3.707 -3.244 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 7.78 10.538 -3.558 -4.728 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 5.96 11.032 -2.213 -5.038 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 5.64 10.432 -1.200 -5.709 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 6.81 11.206 -0.153 -5.904 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 8.61 12.419 -0.515 -5.331 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 8.05 13.658 0.170 -5.193 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 11.41 13.934 1.328 -5.562 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 7.19 14.628 -0.540 -4.543 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 5.46 14.419 -1.813 -4.100 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 10.14 15.466 -2.434 -3.532 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 5.15 13.296 -2.481 -4.196 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 8.28 12.330 -1.788 -4.809 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 19.59 7.699 -2.741 -0.810 A P DT 2 ATOM A P DT 1 2 1.00 1 P 20.41 6.588 -3.545 -0.207 A OP1 DT 2 ATOM A OP1 DT 1 2 1.00 1 O 18.85 7.159 -1.711 -1.757 A OP2 DT 2 ATOM A OP2 DT 1 2 1.00 1 O 14.20 8.933 -2.362 0.047 A O5' DT 2 ATOM A O5' DT 1 2 1.00 1 O 18.12 9.636 -3.349 0.820 A C5' DT 2 ATOM A C5' DT 1 2 1.00 1 C 17.74 11.049 -2.839 0.982 A C4' DT 2 ATOM A C4' DT 1 2 1.00 1 C 17.74 11.615 -2.545 -0.283 A O4' DT 2 ATOM A O4' DT 1 2 1.00 1 O 19.12 11.176 -1.528 1.745 A C3' DT 2 ATOM A C3' DT 1 2 1.00 1 C 22.36 11.070 -1.673 3.152 A O3' DT 2 ATOM A O3' DT 1 2 1.00 1 O 17.85 12.585 -1.081 1.307 A C2' DT 2 ATOM A C2' DT 1 2 1.00 1 C 12.64 12.606 -1.507 -0.128 A C1' DT 2 ATOM A C1' DT 1 2 1.00 1 C 9.55 12.308 -0.353 -1.012 A N1 DT 2 ATOM A N1 DT 1 2 1.00 1 N 7.45 13.411 0.413 -1.363 A C2 DT 2 ATOM A C2 DT 1 2 1.00 1 C 8.22 14.530 0.162 -0.925 A O2 DT 2 ATOM A O2 DT 1 2 1.00 1 O 8.01 13.206 1.451 -2.217 A N3 DT 2 ATOM A N3 DT 1 2 1.00 1 N 7.67 11.985 1.728 -2.744 A C4 DT 2 ATOM A C4 DT 1 2 1.00 1 C 10.46 11.930 2.715 -3.546 A O4 DT 2 ATOM A O4 DT 1 2 1.00 1 O 3.98 10.878 0.902 -2.409 A C5 DT 2 ATOM A C5 DT 1 2 1.00 1 C 3.03 9.516 1.217 -2.978 A C7 DT 2 ATOM A C7 DT 1 2 1.00 1 C 5.06 11.091 -0.102 -1.563 A C6 DT 2 ATOM A C6 DT 1 2 1.00 1 C 28.15 10.321 -0.536 3.970 A P DC 3 ATOM A P DC 1 3 1.00 1 P 29.35 9.389 -1.196 4.922 A OP1 DC 3 ATOM A OP1 DC 1 3 1.00 1 O 27.97 9.682 0.255 2.867 A OP2 DC 3 ATOM A OP2 DC 1 3 1.00 1 O 22.68 11.483 0.260 4.710 A O5' DC 3 ATOM A O5' DC 1 3 1.00 1 O 24.92 12.402 0.758 3.726 A C5' DC 3 ATOM A C5' DC 1 3 1.00 1 C 23.08 13.581 1.388 4.420 A C4' DC 3 ATOM A C4' DC 1 3 1.00 1 C 27.27 14.560 1.558 3.404 A O4' DC 3 ATOM A O4' DC 1 3 1.00 1 O 23.43 13.343 2.737 5.038 A C3' DC 3 ATOM A C3' DC 1 3 1.00 1 C 25.54 13.572 2.758 6.463 A O3' DC 3 ATOM A O3' DC 1 3 1.00 1 O 25.72 14.321 3.686 4.356 A C2' DC 3 ATOM A C2' DC 1 3 1.00 1 C 22.89 14.696 2.945 3.098 A C1' DC 3 ATOM A C1' DC 1 3 1.00 1 C 20.44 13.785 3.345 2.018 A N1 DC 3 ATOM A N1 DC 1 3 1.00 1 N 19.82 14.211 4.401 1.228 A C2 DC 3 ATOM A C2 DC 1 3 1.00 1 C 19.34 15.296 4.924 1.457 A O2 DC 3 ATOM A O2 DC 1 3 1.00 1 O 20.88 13.381 4.797 0.226 A N3 DC 3 ATOM A N3 DC 1 3 1.00 1 N 22.27 12.159 4.218 0.015 A C4 DC 3 ATOM A C4 DC 1 3 1.00 1 C 21.02 11.380 4.652 -0.987 A N4 DC 3 ATOM A N4 DC 1 3 1.00 1 N 22.07 11.738 3.145 0.847 A C5 DC 3 ATOM A C5 DC 1 3 1.00 1 C 20.93 12.581 2.749 1.819 A C6 DC 3 ATOM A C6 DC 1 3 1.00 1 C 26.13 13.249 4.145 7.228 A P DT 4 ATOM A P DT 1 4 1.00 1 P 32.53 13.504 3.907 8.673 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 25.37 11.785 4.341 6.832 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 17.95 14.194 5.248 6.662 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 15.14 15.607 5.380 6.834 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 15.44 15.973 6.673 6.116 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 16.75 15.700 6.524 4.745 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 14.00 15.173 7.899 6.524 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 18.73 15.645 8.491 7.720 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 15.19 15.360 8.814 5.326 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 15.15 15.428 7.848 4.189 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 13.97 14.160 7.776 3.450 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 13.15 13.990 8.644 2.390 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 13.53 14.858 9.470 2.156 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 11.60 12.832 8.538 1.666 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 11.54 11.870 7.622 1.959 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 13.43 10.840 7.610 1.211 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 12.09 12.061 6.725 3.049 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 7.58 11.053 5.677 3.416 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 14.34 13.211 6.827 3.743 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 27.61 14.790 9.516 8.579 A P DA 5 ATOM A P DA 1 5 1.00 1 P 22.02 15.309 9.627 9.977 A OP1 DA 5 ATOM A OP1 DA 1 5 1.00 1 O 14.47 13.338 9.227 8.330 A OP2 DA 5 ATOM A OP2 DA 1 5 1.00 1 O 19.11 15.181 10.942 7.875 A O5' DA 5 ATOM A O5' DA 1 5 1.00 1 O 12.04 13.921 11.619 7.555 A C5' DA 5 ATOM A C5' DA 1 5 1.00 1 C 11.89 14.364 12.649 6.531 A C4' DA 5 ATOM A C4' DA 1 5 1.00 1 C 12.02 14.560 12.019 5.296 A O4' DA 5 ATOM A O4' DA 1 5 1.00 1 O 11.99 13.325 13.734 6.322 A C3' DA 5 ATOM A C3' DA 1 5 1.00 1 C 18.44 13.606 14.841 7.166 A O3' DA 5 ATOM A O3' DA 1 5 1.00 1 O 12.81 13.474 14.066 4.853 A C2' DA 5 ATOM A C2' DA 1 5 1.00 1 C 8.63 13.879 12.725 4.267 A C1' DA 5 ATOM A C1' DA 1 5 1.00 1 C 6.64 12.670 12.040 3.802 A N9 DA 5 ATOM A N9 DA 1 5 1.00 1 N 4.88 12.040 10.955 4.317 A C8 DA 5 ATOM A C8 DA 1 5 1.00 1 C 7.15 10.964 10.606 3.647 A N7 DA 5 ATOM A N7 DA 1 5 1.00 1 N 5.96 10.912 11.517 2.589 A C5 DA 5 ATOM A C5 DA 1 5 1.00 1 C 6.23 10.002 11.653 1.511 A C6 DA 5 ATOM A C6 DA 1 5 1.00 1 C 5.89 8.980 10.832 1.294 A N6 DA 5 ATOM A N6 DA 1 5 1.00 1 N 3.00 10.274 12.674 0.657 A N1 DA 5 ATOM A N1 DA 1 5 1.00 1 N 7.72 11.359 13.474 0.844 A C2 DA 5 ATOM A C2 DA 1 5 1.00 1 C 4.19 12.262 13.402 1.824 A N3 DA 5 ATOM A N3 DA 1 5 1.00 1 N 5.64 11.968 12.394 2.660 A C4 DA 5 ATOM A C4 DA 1 5 1.00 1 C 12.38 12.487 15.964 7.442 A P DG 6 ATOM A P DG 1 6 1.00 1 P 19.19 13.121 16.811 8.453 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 19.23 11.321 15.168 7.816 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 17.14 12.381 16.573 5.970 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 15.41 12.708 17.952 5.680 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 13.87 12.142 18.250 4.314 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 13.41 11.998 17.028 3.598 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 14.92 10.746 18.846 4.258 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 13.67 10.683 20.233 4.560 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 10.87 10.355 18.586 2.793 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 10.44 10.981 17.250 2.577 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 8.54 10.040 16.152 2.781 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 9.12 10.155 15.245 3.797 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 13.90 9.240 14.296 3.731 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 8.41 8.495 14.619 2.601 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 9.70 7.363 13.994 2.030 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 10.74 6.780 12.981 2.451 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 9.85 6.903 14.632 0.896 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 3.88 7.482 15.752 0.396 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 7.71 6.899 16.258 -0.684 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 6.92 8.546 16.369 0.898 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 8.28 8.989 15.760 2.013 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 11.52 9.504 20.535 5.636 A P DA 7 ATOM A P DA 1 7 1.00 1 P 18.21 9.929 21.884 6.128 A OP1 DA 7 ATOM A OP1 DA 1 7 1.00 1 O 11.92 9.529 19.437 6.534 A OP2 DA 7 ATOM A OP2 DA 1 7 1.00 1 O 8.91 8.201 20.586 4.673 A O5' DA 7 ATOM A O5' DA 1 7 1.00 1 O 6.45 8.342 21.586 3.620 A C5' DA 7 ATOM A C5' DA 1 7 1.00 1 C 3.39 7.248 21.318 2.626 A C4' DA 7 ATOM A C4' DA 1 7 1.00 1 C 5.79 7.376 20.033 2.057 A O4' DA 7 ATOM A O4' DA 1 7 1.00 1 O 3.85 5.844 21.323 3.231 A C3' DA 7 ATOM A C3' DA 1 7 1.00 1 C 7.81 5.439 22.642 3.445 A O3' DA 7 ATOM A O3' DA 1 7 1.00 1 O 5.70 5.069 20.565 2.156 A C2' DA 7 ATOM A C2' DA 1 7 1.00 1 C 3.87 6.056 19.527 1.752 A C1' DA 7 ATOM A C1' DA 1 7 1.00 1 C 4.66 5.895 18.301 2.540 A N9 DA 7 ATOM A N9 DA 1 7 1.00 1 N 6.62 6.707 17.875 3.561 A C8 DA 7 ATOM A C8 DA 1 7 1.00 1 C 2.28 6.324 16.743 4.112 A N7 DA 7 ATOM A N7 DA 1 7 1.00 1 N 1.74 5.218 16.381 3.349 A C5 DA 7 ATOM A C5 DA 1 7 1.00 1 C 4.78 4.379 15.258 3.413 A C6 DA 7 ATOM A C6 DA 1 7 1.00 1 C 9.36 4.550 14.283 4.297 A N6 DA 7 ATOM A N6 DA 1 7 1.00 1 N 5.07 3.362 15.241 2.513 A N1 DA 7 ATOM A N1 DA 1 7 1.00 1 N 4.94 3.171 16.249 1.632 A C2 DA 7 ATOM A C2 DA 1 7 1.00 1 C 4.89 3.911 17.365 1.538 A N3 DA 7 ATOM A N3 DA 1 7 1.00 1 N 4.26 4.933 17.339 2.404 A C4 DA 7 ATOM A C4 DA 1 7 1.00 1 C 14.05 4.209 23.208 4.243 A P DC 8 ATOM A P DC 1 8 1.00 1 P 18.27 4.494 24.749 4.243 A OP1 DC 8 ATOM A OP1 DC 1 8 1.00 1 O 16.14 4.294 22.557 5.545 A OP2 DC 8 ATOM A OP2 DC 1 8 1.00 1 O 10.49 2.932 22.914 3.421 A O5' DC 8 ATOM A O5' DC 1 8 1.00 1 O 14.57 2.749 21.642 2.712 A C5' DC 8 ATOM A C5' DC 1 8 1.00 1 C 15.98 1.349 21.825 2.134 A C4' DC 8 ATOM A C4' DC 1 8 1.00 1 C 17.74 0.689 20.633 1.831 A O4' DC 8 ATOM A O4' DC 1 8 1.00 1 O 15.68 0.468 22.544 3.162 A C3' DC 8 ATOM A C3' DC 1 8 1.00 1 C 23.46 -0.208 23.621 2.486 A O3' DC 8 ATOM A O3' DC 1 8 1.00 1 O 14.98 -0.375 21.450 3.741 A C2' DC 8 ATOM A C2' DC 1 8 1.00 1 C 13.74 -0.021 20.191 3.007 A C1' DC 8 ATOM A C1' DC 1 8 1.00 1 C 14.40 0.834 19.292 3.819 A N1 DC 8 ATOM A N1 DC 1 8 1.00 1 N 13.07 0.464 17.960 3.871 A C2 DC 8 ATOM A C2 DC 1 8 1.00 1 C 14.67 -0.540 17.539 3.305 A O2 DC 8 ATOM A O2 DC 1 8 1.00 1 O 12.98 1.243 17.096 4.580 A N3 DC 8 ATOM A N3 DC 1 8 1.00 1 N 13.43 2.332 17.535 5.274 A C4 DC 8 ATOM A C4 DC 1 8 1.00 1 C 12.91 3.000 16.637 5.997 A N4 DC 8 ATOM A N4 DC 1 8 1.00 1 N 12.96 2.707 18.909 5.212 A C5 DC 8 ATOM A C5 DC 1 8 1.00 1 C 10.13 1.945 19.735 4.489 A C6 DC 8 ATOM A C6 DC 1 8 1.00 1 C 14.98 14.585 15.313 1.617 A O HOH 9 HETATM B O HOH 2 1.00 1 O 22.76 14.594 0.902 9.098 A O HOH 10 HETATM B O HOH 2 1.00 1 O 57.46 16.943 10.508 6.253 A O HOH 11 HETATM B O HOH 2 1.00 1 O 0.023496 0.000000 0.000000 0.000000 0.023496 0.000000 0.000000 0.000000 0.040634 0.00000 0.00000 0.00000 Cervi, A. Langlois D'Estaintot, B. Hunter, W.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.560 42.560 24.610 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 48 714 719 -1 Crystal and Molecular Structure of d(GTCTAGAC) 1992 10.2210/pdb1d82/pdb pdb_00001d82 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295.00 1 DIFFRACTOMETER RIGAKU AFC-5 x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 2426.617 DNA (5'-D(*GP*TP*CP*TP*AP*GP*AP*C)-3') 1 syn polymer 18.015 water 3 nat water no no (DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC) GTCTAGAC A polydeoxyribonucleotide n n n n n n n n 2.30 46.43 VAPOR DIFFUSION 6.80 pH 6.80, VAPOR DIFFUSION, temperature 295.00K 295.00 WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 WATER 2 MPD 2 -8.200 1 19 A 1 A 8 5.107 A_DG1:DC8_A 1 -10.434 -1.032 -0.233 -0.142 10.717 1 20 A 2 A 7 3.672 A_DT2:DA7_A 2 -13.048 -0.098 -0.271 -0.094 1.366 1 19 A 3 A 6 7.368 A_DC3:DG6_A 3 -8.921 0.640 0.039 -0.349 -2.409 1 20 A 4 A 5 -5.261 A_DT4:DA5_A 4 -11.731 0.098 0.347 -0.111 2.409 1 20 A 5 A 4 -5.261 A_DA5:DT4_A 5 -11.731 -0.098 0.347 -0.111 -1.366 1 19 A 6 A 3 7.368 A_DG6:DC3_A 6 -8.921 -0.640 0.039 -0.349 -10.717 1 20 A 7 A 2 3.672 A_DA7:DT2_A 7 -13.048 0.098 -0.271 -0.094 8.200 1 19 A 8 A 1 5.107 A_DC8:DG1_A 8 -10.434 1.032 -0.233 -0.142 2.486 38.381 A A 1 2 18.020 A A 8 7 2.900 11.670 0.624 -0.887 AA_DG1DT2:DA7DC8_AA 1 -1.513 2.337 36.597 -2.580 -1.109 3.081 39.100 A A 2 3 17.424 A A 7 6 3.598 11.502 0.061 -1.301 AA_DT2DC3:DG6DA7_AA 2 0.190 -0.288 37.433 -3.389 -0.068 3.239 32.357 A A 3 4 4.510 A A 6 5 3.363 2.511 -0.317 -1.570 AA_DC3DT4:DA5DG6_AA 3 -0.512 0.919 32.258 -3.265 0.477 2.675 24.613 A A 4 5 14.598 A A 5 4 3.184 6.159 0.000 -1.665 AA_DT4DA5:DT4DA5_AA 4 0.000 0.000 23.841 -5.628 0.000 3.239 32.357 A A 5 6 4.510 A A 4 3 3.363 2.511 0.317 -1.570 AA_DA5DG6:DC3DT4_AA 5 0.512 -0.919 32.258 -3.265 -0.477 3.081 39.100 A A 6 7 17.424 A A 3 2 3.598 11.502 -0.061 -1.301 AA_DG6DA7:DT2DC3_AA 6 -0.190 0.288 37.433 -3.389 0.068 2.486 38.381 A A 7 8 18.020 A A 2 1 2.900 11.670 -0.624 -0.887 AA_DA7DC8:DG1DT2_AA 7 1.513 -2.337 36.597 -2.580 1.109 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1992-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-06-29 REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A G 1 n 1 DG 1 A T 2 n 2 DT 2 A C 3 n 3 DC 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A G 6 n 6 DG 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 9.25 1.20 110.70 119.95 A A A O5' P OP1 DT DT DT 2 2 2 N 1 7.20 1.20 110.70 117.90 A A A O5' P OP2 DT DT DT 2 2 2 N 1 2.64 0.30 108.30 110.94 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -4.87 0.60 127.20 122.33 A A A C2 N3 C4 DT DT DT 2 2 2 N 1 4.15 0.60 115.20 119.35 A A A N3 C4 C5 DT DT DT 2 2 2 N 1 -3.71 0.60 119.90 116.19 A A A N3 C4 O4 DT DT DT 2 2 2 N 1 -12.10 1.60 120.90 108.80 A A A P O5' C5' DC DC DC 3 3 3 N 1 3.01 0.30 108.30 111.31 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -4.78 0.60 127.20 122.42 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 4.41 0.60 115.20 119.61 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 -7.29 0.80 109.40 102.11 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 -13.99 1.60 120.90 106.91 A A A P O5' C5' DA DA DA 5 5 5 N 1 4.83 0.30 108.30 113.13 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -4.28 0.70 108.00 103.72 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -8.94 1.20 119.70 110.76 A A A C3' O3' P DG DG DA 6 6 7 Y 1 -3.32 0.50 129.30 125.98 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 10.47 1.20 119.70 130.17 A A A C3' O3' P DA DA DC 7 7 8 Y 1 -8.24 0.80 109.40 101.16 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 2.08 0.30 108.30 110.38 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 A A C5' O DT HOH 2 11 1.67 1_555 3_544 1 A A C4' O DT HOH 2 11 1.76 1_555 3_544 1 A A O4' O DT HOH 2 11 2.02 1_555 3_544 0.2110000 2.500 6.000 801 1 1.000 TR isotropic TR isotropic 2.500 6.000 3 164 0 161 0 0.011 0.023 0.031 0.044 fix fix 2.500 1D82 1861 1757 1.000 1 refinement NUCLSQ CRYSTAL AND MOLECULAR STRUCTURE OF D(GTCTAGAC) 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 7_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 7_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 7_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 6 A N1 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 6 A O6 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 6 A N2 DG 6 7_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 5 A N1 DA 5 7_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 5 A N6 DA 5 7_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 4 A N3 DT 4 7_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 4 A O4 DT 4 7_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 3 A N3 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 3 A O2 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 3 A N4 DC 3 7_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 7_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 7_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 1D82 PDB 1 1D82 1 8 1D82 1 8 1D82 A 1 1 8 96 P 43 21 2