1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Gao, X. Mirau, P. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C7 H14 O4 162.184 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose D-saccharide, alpha linking C8 H14 O4 174.194 (2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate [O4]-ACETOXY-2,3-DIDEOXYFUCOSE D-saccharide, beta linking C6 H12 O3 132.158 (2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol 2,3-DIDEOXYFUCOSE D-saccharide, beta linking C21 H24 O9 420.410 (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose None non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H16 O5 204.220 n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose L-saccharide, alpha linking Mg 2 24.305 MAGNESIUM ION non-polymer UK J.Mol.Biol. JMOBAK 0070 0022-2836 223 259 279 10.1016/0022-2836(92)90730-8 1731073 Structure refinement of the chromomycin dimer-DNA oligomer complex in solution. 1992 10.2210/pdb1d83/pdb pdb_00001d83 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2426.617 DNA (5'-D(*AP*AP*GP*GP*CP*CP*TP*T)-3') 2 syn polymer 432.506 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol 2 man branched 318.363 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate 2 man branched 420.410 (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose 2 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer DEOXYRIBONUCLEIC ACID no no (DA)(DA)(DG)(DG)(DC)(DC)(DT)(DT) AAGGCCTT A,B polydeoxyribonucleotide n n n n n n n n -18.128 1 20 A 1 B 18 -6.534 A_DA1:DT18_B 1 11.369 0.356 -1.256 -0.212 7.583 1 20 A 2 B 17 2.349 A_DA2:DT17_B 2 22.375 0.338 -0.083 0.064 31.514 1 19 A 3 B 16 -9.401 A_DG3:DC16_B 3 12.267 -0.644 0.000 -0.499 9.564 1 19 A 4 B 15 -5.922 A_DG4:DC15_B 4 -5.484 -0.091 1.967 -1.238 -9.968 1 19 A 5 B 14 -5.902 A_DC5:DG14_B 5 -5.292 0.095 1.974 -1.223 -31.815 1 19 A 6 B 13 -9.377 A_DC6:DG13_B 6 12.629 0.685 0.022 -0.470 -7.924 1 20 A 7 B 12 2.336 A_DT7:DA12_B 7 22.780 -0.260 -0.053 0.089 18.221 1 20 A 8 B 11 -6.662 A_DT8:DA11_B 8 11.835 -0.250 -1.256 -0.226 3.207 32.218 A A 1 2 -26.424 B B 18 17 3.352 -14.021 0.280 -0.854 AA_DA1DA2:DT17DT18_BB 1 -8.238 15.525 27.907 1.159 -2.090 2.439 23.337 A A 2 3 13.837 B B 17 16 2.744 5.534 -0.714 -1.240 AA_DA2DG3:DC16DT17_BB 2 -2.586 6.466 22.535 -4.591 1.051 4.972 36.712 A A 3 4 -15.592 B B 16 15 4.966 -9.647 0.892 -1.748 AA_DG3DG4:DC15DC16_BB 3 -7.446 12.036 34.697 -0.711 -3.009 3.344 34.462 A A 4 5 11.052 B B 15 14 3.913 6.510 0.001 -2.737 AA_DG4DC5:DG14DC15_BB 4 0.030 -0.051 33.859 -5.753 0.004 4.975 36.698 A A 5 6 -15.530 B B 14 13 4.966 -9.606 -0.892 -1.753 AA_DC5DC6:DG13DG14_BB 5 7.404 -11.969 34.701 -0.727 3.002 2.443 23.365 A A 6 7 13.845 B B 13 12 2.749 5.544 0.713 -1.238 AA_DC6DT7:DA12DG13_BB 6 2.551 -6.372 22.565 -4.584 -1.059 3.199 32.231 A A 7 8 -26.550 B B 12 11 3.346 -14.086 -0.287 -0.860 AA_DT7DT8:DA11DA12_BB 7 8.313 -15.669 27.868 1.154 2.113 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list pdbx_unobs_or_zero_occ_atoms struct_asym struct_conn struct_site struct_site_gen atom_site chem_comp database_2 struct_conn repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Advisory Atomic model Data collection Derived calculations Other Structure summary Atomic model Database references Derived calculations Structure summary 1 0 1993-07-15 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 3 0 2023-08-02 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag CDR 24 n C CDR 1 CDR 25 n C CDR 2 ERI 26 n C ERI 3 ARI 32 n D ARI 1 BRI 31 n D 1GL 2 ARI 22 n E ARI 1 BRI 21 n E 1GL 2 CDR 34 n F CDR 1 CDR 35 n F CDR 2 ERI 36 n F ERI 3 a-D-2-deoxy-Fucp4OMe Y BNL 1992-07-22 REL oligosaccharide oligosaccharide WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1 2 PDB2Glycan 1.1.0 WURCS [][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}} 2 PDB-CARE LINUCS WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1 3 PDB2Glycan 1.1.0 WURCS [][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}} 3 PDB-CARE LINUCS C3 O1 CDR CDR 1 2 2 H3 HO1 sing C3 O1 CDR ERI 2 3 2 H3 HO1 sing C3 O1 ARI 1GL 1 2 3 H3 HO1 sing n n n n n CPH (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose MG MAGNESIUM ION CHEMICALY SYNTHESIZED sample CHROMOMYCIN BINDS AS A MG2 CATION-COORDINATED DIMER. EACH CHROMOMYCIN IS REPRESENTED AS A SET OF SIX HET GROUPS: 1GL - ARI - CPH - CDR - CDR - ERI. THE COORDINATING MG IS PRESENTED AS A SEPARATE HET GROUP. 1 BRUNGER refinement X-PLOR CPH 33 4 CPH CPH 33 A MG 1 5 MG MG 1 B CPH 23 4 CPH CPH 23 B A 1 n 1 DA 1 A A 2 n 2 DA 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A C 6 n 6 DC 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A A 11 n 1 DA 11 B A 12 n 2 DA 12 B G 13 n 3 DG 13 B G 14 n 4 DG 14 B C 15 n 5 DC 15 B C 16 n 6 DC 16 B T 17 n 7 DT 17 B T 18 n 8 DT 18 B author_defined_assembly 2 dimeric A CPH 33 G O1 CPH 1_555 B MG 1 H MG MG 1_555 A CPH 33 G O9 CPH 1_555 76.7 A CPH 33 G O1 CPH 1_555 B MG 1 H MG MG 1_555 B CPH 23 I O1 CPH 1_555 108.8 A CPH 33 G O9 CPH 1_555 B MG 1 H MG MG 1_555 B CPH 23 I O1 CPH 1_555 105.3 A CPH 33 G O1 CPH 1_555 B MG 1 H MG MG 1_555 B CPH 23 I O9 CPH 1_555 109.5 A CPH 33 G O9 CPH 1_555 B MG 1 H MG MG 1_555 B CPH 23 I O9 CPH 1_555 170.1 B CPH 23 I O1 CPH 1_555 B MG 1 H MG MG 1_555 B CPH 23 I O9 CPH 1_555 80.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B H22 HO8 DG CPH 14 23 1.19 1 A A H22 HO8 DG CPH 4 33 1.20 1 A A H22 O8 DG CPH 4 33 1.56 1 B B H22 O8 DG CPH 14 23 1.56 1 A DA 1 0.098 SIDE CHAIN 1 A DC 5 0.074 SIDE CHAIN 1 A DC 6 0.092 SIDE CHAIN 1 B DA 11 0.099 SIDE CHAIN 1 B DC 15 0.074 SIDE CHAIN 1 B DC 16 0.091 SIDE CHAIN 1 5.18 0.70 110.30 115.48 A A A C1' O4' C4' DA DA DA 1 1 1 N 1 -8.68 0.80 105.90 97.22 A A A O4' C1' C2' DA DA DA 1 1 1 N 1 14.79 0.30 108.30 123.09 A A A O4' C1' N9 DA DA DA 1 1 1 N 1 4.45 0.50 129.30 133.75 A A A N1 C2 N3 DA DA DA 1 1 1 N 1 -5.37 0.50 103.90 98.53 A A A C5 N7 C8 DA DA DA 1 1 1 N 1 11.68 0.50 113.80 125.48 A A A N7 C8 N9 DA DA DA 1 1 1 N 1 -7.33 0.40 105.80 98.47 A A A C8 N9 C4 DA DA DA 1 1 1 N 1 11.76 1.80 126.30 138.06 A A A C4 N9 C1' DA DA DA 1 1 1 N 1 7.45 1.10 109.80 117.25 A A A C5' C4' O4' DA DA DA 2 2 2 N 1 -23.91 2.50 109.70 85.79 A A A C4' C3' O3' DA DA DA 2 2 2 N 1 8.73 1.40 114.30 123.03 A A A N9 C1' C2' DA DA DA 2 2 2 N 1 13.49 0.30 108.30 121.79 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 -5.99 0.60 118.60 112.61 A A A N1 C6 N6 DA DA DA 2 2 2 N 1 5.42 0.80 123.70 129.12 A A A C5 C6 N6 DA DA DA 2 2 2 N 1 13.75 1.20 119.70 133.45 A A A C3' O3' P DA DA DG 2 2 3 Y 1 9.25 1.20 102.50 111.75 A A A C3' C2' C1' DG DG DG 3 3 3 N 1 -10.20 0.80 105.90 95.70 A A A O4' C1' C2' DG DG DG 3 3 3 N 1 11.89 0.30 108.30 120.19 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -3.09 0.50 104.30 101.21 A A A C5 N7 C8 DG DG DG 3 3 3 N 1 6.30 0.50 113.10 119.40 A A A N7 C8 N9 DG DG DG 3 3 3 N 1 -5.89 0.40 106.40 100.51 A A A C8 N9 C4 DG DG DG 3 3 3 N 1 8.10 1.30 127.00 135.10 A A A C8 N9 C1' DG DG DG 3 3 3 N 1 7.35 1.20 119.70 127.05 A A A C3' O3' P DG DG DG 3 3 4 Y 1 3.09 0.50 106.80 109.89 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 -15.05 1.90 112.60 97.55 A A A N9 C1' C2' DG DG DG 4 4 4 N 1 4.46 0.30 108.30 112.76 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -3.89 0.50 111.90 108.01 A A A C2 N3 C4 DG DG DG 4 4 4 N 1 3.03 0.40 110.80 113.83 A A A C4 C5 N7 DG DG DG 4 4 4 N 1 3.66 0.50 104.30 107.96 A A A C5 N7 C8 DG DG DG 4 4 4 N 1 -5.65 0.50 113.10 107.45 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 5.50 0.40 106.40 111.90 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 -6.57 0.40 105.40 98.83 A A A N9 C4 C5 DG DG DG 4 4 4 N 1 7.10 0.60 126.00 133.10 A A A N3 C4 N9 DG DG DG 4 4 4 N 1 -3.52 0.40 104.50 100.98 A A A O4' C4' C3' DC DC DC 5 5 5 N 1 -5.44 0.80 105.90 100.46 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 11.49 0.30 108.30 119.79 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 5.56 0.70 110.30 115.86 A A A C1' O4' C4' DC DC DC 6 6 6 N 1 -10.37 0.80 105.90 95.53 A A A O4' C1' C2' DC DC DC 6 6 6 N 1 9.59 0.30 108.30 117.89 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 6.69 0.70 118.00 124.69 A A A N3 C4 N4 DC DC DC 6 6 6 N 1 -5.45 0.70 120.20 114.75 A A A C5 C4 N4 DC DC DC 6 6 6 N 1 7.64 0.70 110.30 117.94 A A A C1' O4' C4' DT DT DT 7 7 7 N 1 -5.11 0.80 105.90 100.79 A A A O4' C1' C2' DT DT DT 7 7 7 N 1 9.73 0.30 108.30 118.03 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 -5.01 0.60 119.90 114.89 A A A N3 C4 O4 DT DT DT 7 7 7 N 1 5.69 0.70 124.90 130.59 A A A C5 C4 O4 DT DT DT 7 7 7 N 1 6.22 0.60 119.00 125.22 A A A C4 C5 C7 DT DT DT 7 7 7 N 1 -5.58 0.60 122.90 117.32 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 8.15 1.20 115.70 123.85 A A A C5' C4' C3' DT DT DT 8 8 8 N 1 21.07 0.30 108.30 129.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 4.23 0.60 118.00 122.23 A A A C4 C5 C6 DT DT DT 8 8 8 N 1 -4.55 0.60 123.70 119.15 A A A C5 C6 N1 DT DT DT 8 8 8 N 1 -4.13 0.60 122.90 118.77 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 5.16 0.70 110.30 115.46 B B B C1' O4' C4' DA DA DA 11 11 11 N 1 -8.63 0.80 105.90 97.27 B B B O4' C1' C2' DA DA DA 11 11 11 N 1 14.78 0.30 108.30 123.08 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 4.78 0.50 129.30 134.08 B B B N1 C2 N3 DA DA DA 11 11 11 N 1 -5.38 0.50 103.90 98.52 B B B C5 N7 C8 DA DA DA 11 11 11 N 1 11.63 0.50 113.80 125.43 B B B N7 C8 N9 DA DA DA 11 11 11 N 1 -7.34 0.40 105.80 98.46 B B B C8 N9 C4 DA DA DA 11 11 11 N 1 11.86 1.80 126.30 138.16 B B B C4 N9 C1' DA DA DA 11 11 11 N 1 6.96 1.10 109.80 116.76 B B B C5' C4' O4' DA DA DA 12 12 12 N 1 -24.35 2.50 109.70 85.35 B B B C4' C3' O3' DA DA DA 12 12 12 N 1 9.15 1.40 114.30 123.45 B B B N9 C1' C2' DA DA DA 12 12 12 N 1 13.64 0.30 108.30 121.94 B B B O4' C1' N9 DA DA DA 12 12 12 N 1 -6.17 0.60 118.60 112.43 B B B N1 C6 N6 DA DA DA 12 12 12 N 1 5.39 0.80 123.70 129.09 B B B C5 C6 N6 DA DA DA 12 12 12 N 1 14.10 1.20 119.70 133.80 B B B C3' O3' P DA DA DG 12 12 13 Y 1 9.20 1.20 102.50 111.70 B B B C3' C2' C1' DG DG DG 13 13 13 N 1 -9.73 0.80 105.90 96.17 B B B O4' C1' C2' DG DG DG 13 13 13 N 1 12.41 0.30 108.30 120.71 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 -3.51 0.50 104.30 100.79 B B B C5 N7 C8 DG DG DG 13 13 13 N 1 7.17 0.50 113.10 120.27 B B B N7 C8 N9 DG DG DG 13 13 13 N 1 -6.25 0.40 106.40 100.15 B B B C8 N9 C4 DG DG DG 13 13 13 N 1 7.34 1.20 119.70 127.04 B B B C3' O3' P DG DG DG 13 13 14 Y 1 -2.57 0.40 104.50 101.93 B B B O4' C4' C3' DG DG DG 14 14 14 N 1 3.33 0.50 106.80 110.13 B B B O4' C1' C2' DG DG DG 14 14 14 N 1 -15.14 1.90 112.60 97.46 B B B N9 C1' C2' DG DG DG 14 14 14 N 1 5.29 0.30 108.30 113.59 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -4.15 0.50 111.90 107.75 B B B C2 N3 C4 DG DG DG 14 14 14 N 1 3.03 0.40 110.80 113.83 B B B C4 C5 N7 DG DG DG 14 14 14 N 1 3.36 0.50 104.30 107.66 B B B C5 N7 C8 DG DG DG 14 14 14 N 1 -5.26 0.50 113.10 107.84 B B B N7 C8 N9 DG DG DG 14 14 14 N 1 5.50 0.40 106.40 111.90 B B B C8 N9 C4 DG DG DG 14 14 14 N 1 -6.65 0.40 105.40 98.75 B B B N9 C4 C5 DG DG DG 14 14 14 N 1 7.10 0.60 126.00 133.10 B B B N3 C4 N9 DG DG DG 14 14 14 N 1 -3.41 0.40 104.50 101.09 B B B O4' C4' C3' DC DC DC 15 15 15 N 1 -5.39 0.80 105.90 100.51 B B B O4' C1' C2' DC DC DC 15 15 15 N 1 11.45 0.30 108.30 119.75 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 5.18 0.70 110.30 115.48 B B B C1' O4' C4' DC DC DC 16 16 16 N 1 -10.09 0.80 105.90 95.81 B B B O4' C1' C2' DC DC DC 16 16 16 N 1 9.55 0.30 108.30 117.85 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 7.06 0.70 118.00 125.06 B B B N3 C4 N4 DC DC DC 16 16 16 N 1 -5.35 0.70 120.20 114.85 B B B C5 C4 N4 DC DC DC 16 16 16 N 1 7.35 0.70 110.30 117.65 B B B C1' O4' C4' DT DT DT 17 17 17 N 1 -5.08 0.80 105.90 100.82 B B B O4' C1' C2' DT DT DT 17 17 17 N 1 9.92 0.30 108.30 118.22 B B B O4' C1' N1 DT DT DT 17 17 17 N 1 -4.66 0.60 119.90 115.24 B B B N3 C4 O4 DT DT DT 17 17 17 N 1 5.36 0.70 124.90 130.26 B B B C5 C4 O4 DT DT DT 17 17 17 N 1 6.46 0.60 119.00 125.46 B B B C4 C5 C7 DT DT DT 17 17 17 N 1 -5.16 0.60 122.90 117.74 B B B C6 C5 C7 DT DT DT 17 17 17 N 1 21.09 0.30 108.30 129.39 B B B O4' C1' N1 DT DT DT 18 18 18 N 1 4.13 0.60 118.00 122.13 B B B C4 C5 C6 DT DT DT 18 18 18 N 1 -4.40 0.60 123.70 119.30 B B B C5 C6 N1 DT DT DT 18 18 18 N 1 -3.96 0.60 122.90 118.94 B B B C6 C5 C7 DT DT DT 18 18 18 N 1 A A C5' C4' DA DA 1 1 0.046 0.007 1.512 1.558 N 1 A A C2' C1' DA DA 1 1 0.085 0.010 1.519 1.604 N 1 A A O4' C1' DA DA 1 1 0.066 0.011 1.420 1.486 N 1 A A O4' C4' DA DA 1 1 0.054 0.009 1.449 1.503 N 1 A A C6 N1 DA DA 1 1 -0.048 0.007 1.351 1.303 N 1 A A C8 N9 DA DA 1 1 -0.079 0.008 1.373 1.294 N 1 A A N9 C4 DA DA 1 1 0.045 0.006 1.374 1.419 N 1 A A C5' C4' DA DA 2 2 0.043 0.007 1.512 1.555 N 1 A A C5 N7 DA DA 2 2 0.039 0.006 1.388 1.427 N 1 A A N9 C4 DA DA 2 2 0.048 0.006 1.374 1.422 N 1 A A C4' C3' DG DG 3 3 0.074 0.010 1.529 1.603 N 1 A A C2' C1' DG DG 3 3 0.172 0.010 1.519 1.691 N 1 A A O3' P DG DG 3 4 0.081 0.012 1.607 1.688 Y 1 A A P O5' DG DG 4 4 0.087 0.010 1.593 1.680 N 1 A A C4' C3' DG DG 4 4 0.060 0.010 1.529 1.589 N 1 A A N3 C4 DG DG 4 4 0.134 0.007 1.350 1.484 N 1 A A C5 N7 DG DG 4 4 0.040 0.006 1.388 1.428 N 1 A A C8 N9 DG DG 4 4 0.049 0.007 1.374 1.423 N 1 A A N9 C4 DG DG 4 4 0.088 0.008 1.375 1.463 N 1 A A C5' C4' DC DC 5 5 0.058 0.007 1.512 1.570 N 1 A A C5' C4' DC DC 6 6 0.063 0.007 1.512 1.575 N 1 A A O4' C1' DC DC 6 6 0.073 0.011 1.420 1.493 N 1 A A O4' C4' DC DC 6 6 0.058 0.009 1.449 1.507 N 1 A A C5' C4' DT DT 7 7 0.125 0.007 1.512 1.637 N 1 A A C3' C2' DT DT 7 7 0.082 0.012 1.518 1.600 N 1 A A O4' C1' DT DT 7 7 0.067 0.011 1.420 1.487 N 1 A A C4 C5 DT DT 7 7 0.056 0.009 1.445 1.501 N 1 A A C5 C7 DT DT 7 7 0.147 0.006 1.496 1.643 N 1 B B C5' C4' DA DA 11 11 0.045 0.007 1.512 1.557 N 1 B B C2' C1' DA DA 11 11 0.084 0.010 1.519 1.603 N 1 B B O4' C1' DA DA 11 11 0.066 0.011 1.420 1.486 N 1 B B O4' C4' DA DA 11 11 0.054 0.009 1.449 1.503 N 1 B B C6 N1 DA DA 11 11 -0.049 0.007 1.351 1.302 N 1 B B C8 N9 DA DA 11 11 -0.078 0.008 1.373 1.295 N 1 B B N9 C4 DA DA 11 11 0.043 0.006 1.374 1.417 N 1 B B C5' C4' DA DA 12 12 0.047 0.007 1.512 1.559 N 1 B B C5 C6 DA DA 12 12 0.054 0.009 1.406 1.460 N 1 B B C5 N7 DA DA 12 12 0.038 0.006 1.388 1.426 N 1 B B N9 C4 DA DA 12 12 0.046 0.006 1.374 1.420 N 1 B B C4' C3' DG DG 13 13 0.075 0.010 1.529 1.604 N 1 B B C2' C1' DG DG 13 13 0.165 0.010 1.519 1.684 N 1 B B O3' P DG DG 13 14 0.081 0.012 1.607 1.688 Y 1 B B P O5' DG DG 14 14 0.088 0.010 1.593 1.681 N 1 B B C4' C3' DG DG 14 14 0.082 0.010 1.529 1.611 N 1 B B N3 C4 DG DG 14 14 0.137 0.007 1.350 1.487 N 1 B B C5 N7 DG DG 14 14 0.040 0.006 1.388 1.428 N 1 B B N9 C4 DG DG 14 14 0.088 0.008 1.375 1.463 N 1 B B C5' C4' DC DC 15 15 0.055 0.007 1.512 1.567 N 1 B B C5' C4' DC DC 16 16 0.065 0.007 1.512 1.577 N 1 B B O4' C1' DC DC 16 16 0.070 0.011 1.420 1.490 N 1 B B O4' C4' DC DC 16 16 0.056 0.009 1.449 1.505 N 1 B B C5' C4' DT DT 17 17 0.120 0.007 1.512 1.632 N 1 B B C3' C2' DT DT 17 17 0.076 0.012 1.518 1.594 N 1 B B O4' C1' DT DT 17 17 0.066 0.011 1.420 1.486 N 1 B B C5 C7 DT DT 17 17 0.151 0.006 1.496 1.647 N model building X-PLOR refinement X-PLOR phasing X-PLOR STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION 1 N N 1 N N 2 N N 3 N N 3 N N 2 N N 4 N N 5 N N 4 N N covale 1.387 one A CPH 33 G C6 CPH 1_555 D ARI 1 D O1 ARI 1_555 covale 1.434 one A CPH 33 G C2 CPH 1_555 F CDR 1 F O1 CDR 1_555 covale 1.434 one B CPH 23 I C2 CPH 1_555 C CDR 1 C O1 CDR 1_555 covale 1.385 one B CPH 23 I C6 CPH 1_555 E ARI 1 E O1 ARI 1_555 covale 1.449 one C CDR 1 C C3 CDR 1_555 C CDR 2 C O1 CDR 1_555 covale 1.437 one C CDR 2 C C3 CDR 1_555 C ERI 3 C O1 ERI 1_555 covale 1.446 one D ARI 1 D C3 ARI 1_555 D 1GL 2 D O1 1GL 1_555 covale 1.445 one E ARI 1 E C3 ARI 1_555 E 1GL 2 E O1 1GL 1_555 covale 1.447 one F CDR 1 F C3 CDR 1_555 F CDR 2 F O1 CDR 1_555 covale 1.438 one F CDR 2 F C3 CDR 1_555 F ERI 3 F O1 ERI 1_555 metalc 1.890 A CPH 33 G O1 CPH 1_555 B MG 1 H MG MG 1_555 metalc 2.068 A CPH 33 G O9 CPH 1_555 B MG 1 H MG MG 1_555 metalc 1.888 B MG 1 H MG MG 1_555 B CPH 23 I O1 CPH 1_555 metalc 1.953 B MG 1 H MG MG 1_555 B CPH 23 I O9 CPH 1_555 hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 B DT 18 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 B DT 18 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 17 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 17 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 16 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 16 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 16 B N4 DC 6 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 12 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 12 B N6 DA 2 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 11 B N1 DA 1 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 11 B N6 DA 1 1_555 DNA DNA, DOUBLE HELIX, CHROMOMYCIN 1D83 PDB 1 1D83 1 8 1D83 1 8 1D83 A 1 1 8 11 18 1D83 11 18 1D83 B 1 1 8 1 P 1