0.039283
0.000000
0.000000
0.000000
0.024316
0.000000
0.000000
0.000000
0.014907
0.00000
0.00000
0.00000
Sriram, M.
Van Der Marel, G.A.
Roelen, H.L.P.F.
Van Boom, J.H.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.456
41.126
67.081
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C12 H18 N5 O7 P
375.274
n
O6-ETHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C18 H26 N10 O3
430.464
NETROPSIN
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
P
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
R
C
Y
157
N
N
Y
158
N
C
Y
159
N
N
Y
160
N
C
Y
161
N
C
N
162
N
O
Y
163
N
N
Y
164
N
C
N
165
N
N
N
166
N
C
Y
167
N
N
Y
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
C
N
191
N
N
N
192
N
N
N
193
N
N
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
C
Y
201
N
N
N
202
N
C
Y
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
N
N
211
N
C
Y
212
N
C
N
213
N
C
N
214
N
O
N
215
N
N
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
N
N
220
N
N
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
sing
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
Y
212
N
sing
Y
213
N
doub
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
Y
228
N
sing
Y
229
N
doub
Y
230
N
doub
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
31
11823
11834
10.1021/bi00162a022
1332773
Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex.
1992
10.2210/pdb1d85/pdb
pdb_00001d85
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ROOM TEMPERATURE
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
3691.445
DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3')
2
syn
polymer
430.464
NETROPSIN
1
syn
non-polymer
18.015
water
89
nat
water
no
yes
(DC)(DG)(DC)(G36)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2.38
48.28
VAPOR DIFFUSION
6.00
pH 6.00, VAPOR DIFFUSION
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE
1
WATER
2
MPD
2
17.676
1
19
A
1
B
24
-5.163
A_DC1:DG24_B
1
3.734
0.068
-0.059
-0.097
4.283
1
19
A
2
B
23
-2.530
A_DG2:DC23_B
2
-8.557
0.252
-0.082
-0.017
-2.222
1
19
A
3
B
22
0.282
A_DC3:DG22_B
3
-4.893
-0.323
0.035
-0.128
18.801
1
A
4
B
21
10.748
A_G364:DC21_B
4
-5.156
1.234
0.225
0.359
-2.958
1
20
A
5
B
20
5.899
A_DA5:DT20_B
5
-5.112
-0.390
0.275
-0.291
14.470
1
20
A
6
B
19
-4.818
A_DA6:DT19_B
6
-17.930
-0.254
0.545
-0.156
-6.125
1
20
A
7
B
18
-4.355
A_DT7:DA18_B
7
-15.481
-0.532
-0.185
-0.209
-5.905
1
20
A
8
B
17
11.396
A_DT8:DA17_B
8
-6.401
-0.195
0.592
-0.249
8.369
A
9
B
16
2.058
A_DC9:G3616_B
9
-5.971
-2.383
-0.337
0.192
2.875
1
19
A
10
B
15
-1.515
A_DG10:DC15_B
10
-8.943
0.070
0.117
-0.183
-9.276
1
19
A
11
B
14
-5.842
A_DC11:DG14_B
11
-5.969
0.276
1.038
-0.244
-4.955
1
19
A
12
B
13
-4.407
A_DG12:DC13_B
12
-9.409
-0.049
0.019
-0.100
4.047
38.052
A
A
1
2
8.096
B
B
24
23
3.912
5.245
-1.004
0.496
AA_DC1DG2:DC23DG24_BB
1
-5.694
8.790
37.285
-0.058
0.650
3.588
39.345
A
A
2
3
-3.754
B
B
23
22
3.564
-2.524
1.048
0.356
AA_DG2DC3:DG22DC23_BB
2
2.285
-3.397
39.203
0.856
-1.260
3.077
31.534
A
A
3
4
0.017
B
B
22
21
3.121
0.009
0.435
1.113
AA_DC3G364:DC21DG22_BB
3
-2.580
4.752
31.431
2.046
-1.255
3.766
37.488
A
A
4
5
7.040
B
B
21
20
3.749
4.509
-0.354
0.228
AA_G364DA5:DT20DC21_BB
4
-3.144
4.909
37.097
-0.327
0.075
2.840
34.958
A
A
5
6
-12.875
B
B
20
19
2.831
-7.670
-0.316
-0.282
AA_DA5DA6:DT19DT20_BB
5
-2.251
3.779
34.060
0.549
0.227
3.790
38.990
A
A
6
7
3.553
B
B
19
18
3.798
2.355
0.372
-0.004
AA_DA6DT7:DA18DT19_BB
6
7.909
-11.933
38.140
-0.340
0.565
3.468
27.660
A
A
7
8
-6.089
B
B
18
17
3.523
-2.892
0.131
-0.377
AA_DT7DT8:DA17DA18_BB
7
-4.812
10.133
27.095
-0.032
-1.535
2.498
30.536
A
A
8
9
9.120
B
B
17
16
2.702
4.759
-0.598
-0.148
AA_DT8DC9:G3616DA17_BB
8
5.559
-10.653
29.667
-1.044
2.026
3.768
50.516
A
A
9
10
-0.098
B
B
16
15
3.798
-0.083
-0.171
1.897
AA_DC9DG10:DC15G3616_BB
9
-9.229
10.868
49.720
2.230
-0.564
3.823
34.346
A
A
10
11
-21.621
B
B
15
14
3.880
-12.374
-1.254
-0.038
AA_DG10DC11:DG14DC15_BB
10
-8.093
14.142
31.087
2.339
0.551
3.387
40.629
A
A
11
12
1.502
B
B
14
13
3.280
1.028
0.813
0.495
AA_DC11DG12:DC13DG14_BB
11
11.981
-17.497
38.881
0.593
0.219
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1993-07-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1992-08-24
REL
NT
NETROPSIN
HOH
water
NT
25
2
NT
NT
25
B
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
35
3
HOH
HOH
35
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
54
3
HOH
HOH
54
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
60
3
HOH
HOH
60
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
71
3
HOH
HOH
71
A
HOH
75
3
HOH
HOH
75
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
84
3
HOH
HOH
84
A
HOH
88
3
HOH
HOH
88
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
98
3
HOH
HOH
98
A
HOH
99
3
HOH
HOH
99
A
HOH
100
3
HOH
HOH
100
A
HOH
105
3
HOH
HOH
105
A
HOH
107
3
HOH
HOH
107
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
26
3
HOH
HOH
26
B
HOH
27
3
HOH
HOH
27
B
HOH
30
3
HOH
HOH
30
B
HOH
31
3
HOH
HOH
31
B
HOH
32
3
HOH
HOH
32
B
HOH
33
3
HOH
HOH
33
B
HOH
34
3
HOH
HOH
34
B
HOH
36
3
HOH
HOH
36
B
HOH
37
3
HOH
HOH
37
B
HOH
38
3
HOH
HOH
38
B
HOH
42
3
HOH
HOH
42
B
HOH
43
3
HOH
HOH
43
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
46
3
HOH
HOH
46
B
HOH
50
3
HOH
HOH
50
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
55
3
HOH
HOH
55
B
HOH
56
3
HOH
HOH
56
B
HOH
59
3
HOH
HOH
59
B
HOH
61
3
HOH
HOH
61
B
HOH
65
3
HOH
HOH
65
B
HOH
66
3
HOH
HOH
66
B
HOH
67
3
HOH
HOH
67
B
HOH
70
3
HOH
HOH
70
B
HOH
72
3
HOH
HOH
72
B
HOH
73
3
HOH
HOH
73
B
HOH
74
3
HOH
HOH
74
B
HOH
76
3
HOH
HOH
76
B
HOH
77
3
HOH
HOH
77
B
HOH
78
3
HOH
HOH
78
B
HOH
82
3
HOH
HOH
82
B
HOH
83
3
HOH
HOH
83
B
HOH
85
3
HOH
HOH
85
B
HOH
86
3
HOH
HOH
86
B
HOH
87
3
HOH
HOH
87
B
HOH
89
3
HOH
HOH
89
B
HOH
90
3
HOH
HOH
90
B
HOH
91
3
HOH
HOH
91
B
HOH
92
3
HOH
HOH
92
B
HOH
95
3
HOH
HOH
95
B
HOH
96
3
HOH
HOH
96
B
HOH
97
3
HOH
HOH
97
B
HOH
101
3
HOH
HOH
101
B
HOH
102
3
HOH
HOH
102
B
HOH
103
3
HOH
HOH
103
B
HOH
104
3
HOH
HOH
104
B
HOH
106
3
HOH
HOH
106
B
HOH
108
3
HOH
HOH
108
B
HOH
111
3
HOH
HOH
111
B
HOH
112
3
HOH
HOH
112
B
HOH
113
3
HOH
HOH
113
B
HOH
114
3
HOH
HOH
114
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
+G
4
n
4
G36
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
+G
16
n
4
G36
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
G36
4
A
G36
4
DG
B
G36
16
B
G36
4
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-5.66
0.80
109.40
103.74
A
A
A
O5'
C5'
C4'
DC
DC
DC
1
1
1
N
1
5.55
0.60
118.90
124.45
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-4.50
0.70
121.90
117.40
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
1
-3.30
0.40
104.50
101.20
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
5.17
0.30
108.30
113.47
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.57
0.60
125.10
120.53
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
4.07
0.50
111.50
115.57
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
8.02
0.30
108.30
116.32
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-6.13
0.80
109.40
103.27
A
A
A
O5'
C5'
C4'
DA
DA
DA
5
5
5
N
1
-4.83
0.80
102.40
97.57
A
A
A
C3'
C2'
C1'
DA
DA
DA
5
5
5
N
1
-5.32
0.80
105.90
100.58
A
A
A
O4'
C1'
C2'
DA
DA
DA
5
5
5
N
1
5.51
0.60
118.60
124.11
A
A
A
C6
N1
C2
DA
DA
DA
5
5
5
N
1
-4.00
0.50
129.30
125.30
A
A
A
N1
C2
N3
DA
DA
DA
5
5
5
N
1
-3.83
0.50
117.70
113.87
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
1
4.39
0.60
118.60
122.99
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
1
-15.00
1.50
119.60
104.60
A
A
A
OP1
P
OP2
DA
DA
DA
6
6
6
N
1
7.84
1.20
110.70
118.54
A
A
A
O5'
P
OP2
DA
DA
DA
6
6
6
N
1
-5.70
0.80
109.40
103.70
A
A
A
O5'
C5'
C4'
DA
DA
DA
6
6
6
N
1
-7.19
1.00
110.10
102.91
A
A
A
C1'
O4'
C4'
DA
DA
DA
6
6
6
N
1
-7.07
0.80
105.90
98.83
A
A
A
O4'
C1'
C2'
DA
DA
DA
6
6
6
N
1
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-7.90
0.80
109.40
101.50
A
A
A
O5'
C5'
C4'
DT
DT
DT
7
7
7
N
1
-5.74
0.80
102.40
96.66
A
A
A
C3'
C2'
C1'
DT
DT
DT
7
7
7
N
1
7.40
0.30
108.30
115.70
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
5.18
0.60
114.60
119.78
A
A
A
N1
C2
N3
DT
DT
DT
7
7
7
N
1
-5.54
0.60
127.20
121.66
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
-11.40
1.50
119.60
108.20
A
A
A
OP1
P
OP2
DT
DT
DT
8
8
8
N
1
9.18
1.20
110.70
119.88
A
A
A
O5'
P
OP2
DT
DT
DT
8
8
8
N
1
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
4.05
0.60
114.60
118.65
A
A
A
N1
C2
N3
DT
DT
DT
8
8
8
N
1
-5.54
0.60
127.20
121.66
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
3.93
0.60
115.20
119.13
A
A
A
N3
C4
C5
DT
DT
DT
8
8
8
N
1
-5.06
0.80
123.10
118.04
A
A
A
N1
C2
O2
DT
DT
DT
8
8
8
N
1
13.64
1.20
119.70
133.34
A
A
A
C3'
O3'
P
DT
DT
DC
8
8
9
Y
1
-12.06
1.50
119.60
107.54
A
A
A
OP1
P
OP2
DC
DC
DC
9
9
9
N
1
6.63
1.10
109.80
116.43
A
A
A
C5'
C4'
O4'
DC
DC
DC
9
9
9
N
1
-8.85
0.70
102.20
93.35
A
A
A
C4'
C3'
C2'
DC
DC
DC
9
9
9
N
1
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
11.23
1.20
119.70
130.93
A
A
A
C3'
O3'
P
DC
DC
DG
9
9
10
Y
1
8.92
1.20
110.70
119.62
A
A
A
O5'
P
OP2
DG
DG
DG
10
10
10
N
1
-6.33
0.80
109.40
103.07
A
A
A
O5'
C5'
C4'
DG
DG
DG
10
10
10
N
1
-8.50
1.00
110.10
101.60
A
A
A
C1'
O4'
C4'
DG
DG
DG
10
10
10
N
1
-6.98
0.80
105.90
98.92
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
1
-5.10
0.60
128.60
123.50
A
A
A
C5
C6
O6
DG
DG
DG
10
10
10
N
1
-11.29
1.50
119.60
108.31
A
A
A
OP1
P
OP2
DC
DC
DC
11
11
11
N
1
7.96
1.20
110.70
118.66
A
A
A
O5'
P
OP2
DC
DC
DC
11
11
11
N
1
10.43
0.30
108.30
118.73
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
13.21
1.20
119.70
132.91
A
A
A
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
7.65
1.20
110.70
118.35
A
A
A
O5'
P
OP2
DG
DG
DG
12
12
12
N
1
9.95
1.60
120.90
130.85
A
A
A
P
O5'
C5'
DG
DG
DG
12
12
12
N
1
-9.94
1.00
110.10
100.16
A
A
A
C1'
O4'
C4'
DG
DG
DG
12
12
12
N
1
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-4.13
0.60
125.10
120.97
A
A
A
C6
N1
C2
DG
DG
DG
12
12
12
N
1
3.74
0.50
111.50
115.24
A
A
A
C5
C6
N1
DG
DG
DG
12
12
12
N
1
-3.45
0.40
104.50
101.05
B
B
B
O4'
C4'
C3'
DC
DC
DC
13
13
13
N
1
5.21
0.60
118.90
124.11
B
B
B
N1
C2
O2
DC
DC
DC
13
13
13
N
1
8.77
1.20
119.70
128.47
B
B
B
C3'
O3'
P
DC
DC
DG
13
13
14
Y
1
-9.99
1.50
119.60
109.61
B
B
B
OP1
P
OP2
DG
DG
DG
14
14
14
N
1
11.60
1.20
110.70
122.30
B
B
B
O5'
P
OP2
DG
DG
DG
14
14
14
N
1
-7.40
0.80
109.40
102.00
B
B
B
O5'
C5'
C4'
DG
DG
DG
14
14
14
N
1
4.25
0.30
108.30
112.55
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
-4.91
0.60
125.10
120.19
B
B
B
C6
N1
C2
DG
DG
DG
14
14
14
N
1
4.27
0.60
123.90
128.17
B
B
B
N1
C2
N3
DG
DG
DG
14
14
14
N
1
3.30
0.50
111.50
114.80
B
B
B
C5
C6
N1
DG
DG
DG
14
14
14
N
1
7.74
1.20
110.70
118.44
B
B
B
O5'
P
OP2
DC
DC
DC
15
15
15
N
1
-6.35
1.00
110.10
103.75
B
B
B
C1'
O4'
C4'
DC
DC
DC
15
15
15
N
1
3.22
0.50
119.90
123.12
B
B
B
C2
N3
C4
DC
DC
DC
15
15
15
N
1
-2.60
0.40
121.90
119.30
B
B
B
N3
C4
C5
DC
DC
DC
15
15
15
N
1
5.13
0.60
118.90
124.03
B
B
B
N1
C2
O2
DC
DC
DC
15
15
15
N
1
-10.38
1.20
119.70
109.32
B
B
B
C3'
O3'
P
DC
DC
G36
15
15
16
Y
1
-5.79
0.80
109.40
103.61
B
B
B
O5'
C5'
C4'
DA
DA
DA
17
17
17
N
1
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N9
DA
DA
DA
17
17
17
N
1
4.66
0.60
118.60
123.26
B
B
B
C6
N1
C2
DA
DA
DA
17
17
17
N
1
-5.18
0.50
129.30
124.12
B
B
B
N1
C2
N3
DA
DA
DA
17
17
17
N
1
-11.35
1.20
119.70
108.35
B
B
B
C3'
O3'
P
DA
DA
DA
17
17
18
Y
1
7.23
1.20
110.70
117.93
B
B
B
O5'
P
OP1
DA
DA
DA
18
18
18
N
1
-6.05
0.80
109.40
103.35
B
B
B
O5'
C5'
C4'
DA
DA
DA
18
18
18
N
1
-7.45
0.80
105.90
98.45
B
B
B
O4'
C1'
C2'
DA
DA
DA
18
18
18
N
1
10.21
0.30
108.30
118.51
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
1
-4.39
0.50
129.30
124.91
B
B
B
N1
C2
N3
DA
DA
DA
18
18
18
N
1
3.06
0.50
110.60
113.66
B
B
B
C2
N3
C4
DA
DA
DA
18
18
18
N
1
-2.74
0.40
105.80
103.06
B
B
B
C8
N9
C4
DA
DA
DA
18
18
18
N
1
9.56
1.20
119.70
129.26
B
B
B
C3'
O3'
P
DA
DA
DT
18
18
19
Y
1
-10.77
1.50
119.60
108.83
B
B
B
OP1
P
OP2
DT
DT
DT
19
19
19
N
1
-10.79
0.80
109.40
98.61
B
B
B
O5'
C5'
C4'
DT
DT
DT
19
19
19
N
1
4.46
0.30
108.30
112.76
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
-4.32
0.60
127.20
122.88
B
B
B
C2
N3
C4
DT
DT
DT
19
19
19
N
1
3.84
0.60
115.20
119.04
B
B
B
N3
C4
C5
DT
DT
DT
19
19
19
N
1
3.94
0.60
122.90
126.84
B
B
B
C6
C5
C7
DT
DT
DT
19
19
19
N
1
10.04
1.50
120.40
130.44
B
B
B
C6
N1
C1'
DT
DT
DT
20
20
20
N
1
13.28
1.20
119.70
132.98
B
B
B
C3'
O3'
P
DT
DT
DC
20
20
21
Y
1
-3.57
0.40
104.50
100.93
B
B
B
O4'
C4'
C3'
DC
DC
DC
21
21
21
N
1
7.42
1.20
115.70
123.12
B
B
B
C5'
C4'
C3'
DC
DC
DC
21
21
21
N
1
6.01
0.30
108.30
114.31
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
-3.87
0.40
121.90
118.03
B
B
B
N3
C4
C5
DC
DC
DC
21
21
21
N
1
4.67
0.60
118.90
123.57
B
B
B
N1
C2
O2
DC
DC
DC
21
21
21
N
1
-5.38
0.70
121.90
116.52
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
1
4.20
0.70
120.20
124.40
B
B
B
C5
C4
N4
DC
DC
DC
21
21
21
N
1
8.98
1.20
119.70
128.68
B
B
B
C3'
O3'
P
DC
DC
DG
21
21
22
Y
1
8.17
1.20
110.70
118.87
B
B
B
O5'
P
OP2
DG
DG
DG
22
22
22
N
1
-4.77
0.70
102.20
97.43
B
B
B
C4'
C3'
C2'
DG
DG
DG
22
22
22
N
1
2.43
0.30
108.30
110.73
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
-4.82
0.60
119.90
115.08
B
B
B
N1
C6
O6
DG
DG
DG
22
22
22
N
1
7.45
1.10
110.50
117.95
B
B
B
O3'
P
OP1
DG
DC
DC
22
23
23
Y
1
-4.33
0.70
121.90
117.57
B
B
B
N3
C2
O2
DC
DC
DC
23
23
23
N
1
-9.00
1.50
119.60
110.60
B
B
B
OP1
P
OP2
DG
DG
DG
24
24
24
N
1
8.94
1.20
110.70
119.64
B
B
B
O5'
P
OP1
DG
DG
DG
24
24
24
N
1
-3.85
0.60
125.10
121.25
B
B
B
C6
N1
C2
DG
DG
DG
24
24
24
N
1
3.81
0.50
111.50
115.31
B
B
B
C5
C6
N1
DG
DG
DG
24
24
24
N
1
-4.61
0.60
128.60
123.99
B
B
B
C5
C6
O6
DG
DG
DG
24
24
24
N
1
A
A
O4'
C1'
DA
DA
6
6
0.070
0.011
1.420
1.490
N
1
A
A
O4'
C1'
DG
DG
10
10
0.100
0.011
1.420
1.520
N
1
A
A
O4'
C1'
DG
DG
12
12
0.070
0.011
1.420
1.490
N
1
B
B
O3'
P
DC
G36
15
16
0.092
0.012
1.607
1.699
Y
1
B
B
O3'
P
DA
DA
17
18
0.076
0.012
1.607
1.683
Y
1
B
B
P
O5'
DT
DT
20
20
0.082
0.010
1.593
1.675
N
1
B
B
C6
N1
DT
DT
20
20
-0.053
0.007
1.378
1.325
N
1
B
B
P
O5'
DC
DC
23
23
0.088
0.010
1.593
1.681
N
1
A
B
OP2
O
DG
HOH
12
77
1.89
1_555
4_565
0.156
2.500
1514
1
2.000
TR
isotropic
TR
isotropic
2.500
89
610
35
486
0
0.019
fix
fix
2.000
1D85
1
refinement
NUCLSQ
STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
covale
1.649
both
A
DC
3
A
O3'
DC
3
1_555
A
G36
4
A
P
G36
4
1_555
covale
1.569
one
A
G36
4
A
O3'
G36
4
1_555
A
DA
5
A
P
DA
5
1_555
covale
1.699
both
B
DC
15
B
O3'
DC
3
1_555
B
G36
16
B
P
G36
4
1_555
covale
1.647
one
B
G36
16
B
O3'
G36
4
1_555
B
DA
17
B
P
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
G36-DC PAIR
A
G36
4
A
N1
G36
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
DA-DT PAIR
A
DA
5
A
N6
DA
5
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
DC-G36 PAIR
A
DC
9
A
N3
DC
9
1_555
B
G36
16
B
N2
G36
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
1D85
PDB
1
1D85
1
12
1D85
1
12
1D85
A
1
1
12
13
24
1D85
13
24
1D85
B
1
1
12
BINDING SITE FOR RESIDUE NT B 25
B
NT
25
Software
9
A
DA
6
A
DA
6
9
1_555
A
DT
7
A
DT
7
9
1_555
A
DC
9
A
DC
9
9
1_555
A
DG
12
A
DG
12
9
2_665
B
DT
19
B
DT
7
9
1_555
B
DT
20
B
DT
8
9
1_555
B
DC
21
B
DC
9
9
1_555
B
DG
22
B
DG
10
9
1_555
B
HOH
86
E
HOH
9
1_555
19
P 21 21 21