0.039283 0.000000 0.000000 0.000000 0.024316 0.000000 0.000000 0.000000 0.014907 0.00000 0.00000 0.00000 Sriram, M. Van Der Marel, G.A. Roelen, H.L.P.F. Van Boom, J.H. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.456 41.126 67.081 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C12 H18 N5 O7 P 375.274 n O6-ETHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C18 H26 N10 O3 430.464 NETROPSIN non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N P N 145 N O N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 N C N 156 R C Y 157 N N Y 158 N C Y 159 N N Y 160 N C Y 161 N C N 162 N O Y 163 N N Y 164 N C N 165 N N N 166 N C Y 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N O N 188 N H N 189 N H N 190 N C N 191 N N N 192 N N N 193 N N N 194 N C N 195 N C N 196 N O N 197 N N Y 198 N C Y 199 N C Y 200 N C Y 201 N N N 202 N C Y 203 N C N 204 N C N 205 N O N 206 N N Y 207 N C Y 208 N C Y 209 N C Y 210 N N N 211 N C Y 212 N C N 213 N C N 214 N O N 215 N N N 216 N C N 217 N C N 218 N C N 219 N N N 220 N N N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing Y 177 N sing Y 178 N sing Y 179 N doub N 180 N sing Y 181 N sing Y 182 N doub Y 183 N sing N 184 N sing Y 185 N sing N 186 N sing Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N doub N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing Y 212 N sing Y 213 N doub Y 214 N doub N 215 N sing Y 216 N sing N 217 N sing N 218 N sing Y 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing Y 228 N sing Y 229 N doub Y 230 N doub N 231 N sing Y 232 N sing N 233 N sing N 234 N sing Y 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing US Biochemistry BICHAW 0033 0006-2960 31 11823 11834 10.1021/bi00162a022 1332773 Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. 1992 10.2210/pdb1d85/pdb pdb_00001d85 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ROOM TEMPERATURE 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3691.445 DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 430.464 NETROPSIN 1 syn non-polymer 18.015 water 89 nat water no yes (DC)(DG)(DC)(G36)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.38 48.28 VAPOR DIFFUSION 6.00 pH 6.00, VAPOR DIFFUSION ROOM TEMPERATURE WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 17.676 1 19 A 1 B 24 -5.163 A_DC1:DG24_B 1 3.734 0.068 -0.059 -0.097 4.283 1 19 A 2 B 23 -2.530 A_DG2:DC23_B 2 -8.557 0.252 -0.082 -0.017 -2.222 1 19 A 3 B 22 0.282 A_DC3:DG22_B 3 -4.893 -0.323 0.035 -0.128 18.801 1 A 4 B 21 10.748 A_G364:DC21_B 4 -5.156 1.234 0.225 0.359 -2.958 1 20 A 5 B 20 5.899 A_DA5:DT20_B 5 -5.112 -0.390 0.275 -0.291 14.470 1 20 A 6 B 19 -4.818 A_DA6:DT19_B 6 -17.930 -0.254 0.545 -0.156 -6.125 1 20 A 7 B 18 -4.355 A_DT7:DA18_B 7 -15.481 -0.532 -0.185 -0.209 -5.905 1 20 A 8 B 17 11.396 A_DT8:DA17_B 8 -6.401 -0.195 0.592 -0.249 8.369 A 9 B 16 2.058 A_DC9:G3616_B 9 -5.971 -2.383 -0.337 0.192 2.875 1 19 A 10 B 15 -1.515 A_DG10:DC15_B 10 -8.943 0.070 0.117 -0.183 -9.276 1 19 A 11 B 14 -5.842 A_DC11:DG14_B 11 -5.969 0.276 1.038 -0.244 -4.955 1 19 A 12 B 13 -4.407 A_DG12:DC13_B 12 -9.409 -0.049 0.019 -0.100 4.047 38.052 A A 1 2 8.096 B B 24 23 3.912 5.245 -1.004 0.496 AA_DC1DG2:DC23DG24_BB 1 -5.694 8.790 37.285 -0.058 0.650 3.588 39.345 A A 2 3 -3.754 B B 23 22 3.564 -2.524 1.048 0.356 AA_DG2DC3:DG22DC23_BB 2 2.285 -3.397 39.203 0.856 -1.260 3.077 31.534 A A 3 4 0.017 B B 22 21 3.121 0.009 0.435 1.113 AA_DC3G364:DC21DG22_BB 3 -2.580 4.752 31.431 2.046 -1.255 3.766 37.488 A A 4 5 7.040 B B 21 20 3.749 4.509 -0.354 0.228 AA_G364DA5:DT20DC21_BB 4 -3.144 4.909 37.097 -0.327 0.075 2.840 34.958 A A 5 6 -12.875 B B 20 19 2.831 -7.670 -0.316 -0.282 AA_DA5DA6:DT19DT20_BB 5 -2.251 3.779 34.060 0.549 0.227 3.790 38.990 A A 6 7 3.553 B B 19 18 3.798 2.355 0.372 -0.004 AA_DA6DT7:DA18DT19_BB 6 7.909 -11.933 38.140 -0.340 0.565 3.468 27.660 A A 7 8 -6.089 B B 18 17 3.523 -2.892 0.131 -0.377 AA_DT7DT8:DA17DA18_BB 7 -4.812 10.133 27.095 -0.032 -1.535 2.498 30.536 A A 8 9 9.120 B B 17 16 2.702 4.759 -0.598 -0.148 AA_DT8DC9:G3616DA17_BB 8 5.559 -10.653 29.667 -1.044 2.026 3.768 50.516 A A 9 10 -0.098 B B 16 15 3.798 -0.083 -0.171 1.897 AA_DC9DG10:DC15G3616_BB 9 -9.229 10.868 49.720 2.230 -0.564 3.823 34.346 A A 10 11 -21.621 B B 15 14 3.880 -12.374 -1.254 -0.038 AA_DG10DC11:DG14DC15_BB 10 -8.093 14.142 31.087 2.339 0.551 3.387 40.629 A A 11 12 1.502 B B 14 13 3.280 1.028 0.813 0.495 AA_DC11DG12:DC13DG14_BB 11 11.981 -17.497 38.881 0.593 0.219 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1992-08-24 REL NT NETROPSIN HOH water NT 25 2 NT NT 25 B HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 35 3 HOH HOH 35 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 54 3 HOH HOH 54 A HOH 57 3 HOH HOH 57 A HOH 58 3 HOH HOH 58 A HOH 60 3 HOH HOH 60 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 71 3 HOH HOH 71 A HOH 75 3 HOH HOH 75 A HOH 79 3 HOH HOH 79 A HOH 80 3 HOH HOH 80 A HOH 81 3 HOH HOH 81 A HOH 84 3 HOH HOH 84 A HOH 88 3 HOH HOH 88 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 98 3 HOH HOH 98 A HOH 99 3 HOH HOH 99 A HOH 100 3 HOH HOH 100 A HOH 105 3 HOH HOH 105 A HOH 107 3 HOH HOH 107 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 30 3 HOH HOH 30 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 36 3 HOH HOH 36 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 42 3 HOH HOH 42 B HOH 43 3 HOH HOH 43 B HOH 44 3 HOH HOH 44 B HOH 45 3 HOH HOH 45 B HOH 46 3 HOH HOH 46 B HOH 50 3 HOH HOH 50 B HOH 51 3 HOH HOH 51 B HOH 52 3 HOH HOH 52 B HOH 53 3 HOH HOH 53 B HOH 55 3 HOH HOH 55 B HOH 56 3 HOH HOH 56 B HOH 59 3 HOH HOH 59 B HOH 61 3 HOH HOH 61 B HOH 65 3 HOH HOH 65 B HOH 66 3 HOH HOH 66 B HOH 67 3 HOH HOH 67 B HOH 70 3 HOH HOH 70 B HOH 72 3 HOH HOH 72 B HOH 73 3 HOH HOH 73 B HOH 74 3 HOH HOH 74 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 78 3 HOH HOH 78 B HOH 82 3 HOH HOH 82 B HOH 83 3 HOH HOH 83 B HOH 85 3 HOH HOH 85 B HOH 86 3 HOH HOH 86 B HOH 87 3 HOH HOH 87 B HOH 89 3 HOH HOH 89 B HOH 90 3 HOH HOH 90 B HOH 91 3 HOH HOH 91 B HOH 92 3 HOH HOH 92 B HOH 95 3 HOH HOH 95 B HOH 96 3 HOH HOH 96 B HOH 97 3 HOH HOH 97 B HOH 101 3 HOH HOH 101 B HOH 102 3 HOH HOH 102 B HOH 103 3 HOH HOH 103 B HOH 104 3 HOH HOH 104 B HOH 106 3 HOH HOH 106 B HOH 108 3 HOH HOH 108 B HOH 111 3 HOH HOH 111 B HOH 112 3 HOH HOH 112 B HOH 113 3 HOH HOH 113 B HOH 114 3 HOH HOH 114 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A +G 4 n 4 G36 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B +G 16 n 4 G36 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A G36 4 A G36 4 DG B G36 16 B G36 4 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -5.66 0.80 109.40 103.74 A A A O5' C5' C4' DC DC DC 1 1 1 N 1 5.55 0.60 118.90 124.45 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -4.50 0.70 121.90 117.40 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 -3.30 0.40 104.50 101.20 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 5.17 0.30 108.30 113.47 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -4.57 0.60 125.10 120.53 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 4.07 0.50 111.50 115.57 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 8.02 0.30 108.30 116.32 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -6.13 0.80 109.40 103.27 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 -4.83 0.80 102.40 97.57 A A A C3' C2' C1' DA DA DA 5 5 5 N 1 -5.32 0.80 105.90 100.58 A A A O4' C1' C2' DA DA DA 5 5 5 N 1 5.51 0.60 118.60 124.11 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -4.00 0.50 129.30 125.30 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 -3.83 0.50 117.70 113.87 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 4.39 0.60 118.60 122.99 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 -15.00 1.50 119.60 104.60 A A A OP1 P OP2 DA DA DA 6 6 6 N 1 7.84 1.20 110.70 118.54 A A A O5' P OP2 DA DA DA 6 6 6 N 1 -5.70 0.80 109.40 103.70 A A A O5' C5' C4' DA DA DA 6 6 6 N 1 -7.19 1.00 110.10 102.91 A A A C1' O4' C4' DA DA DA 6 6 6 N 1 -7.07 0.80 105.90 98.83 A A A O4' C1' C2' DA DA DA 6 6 6 N 1 2.96 0.30 108.30 111.26 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 -7.90 0.80 109.40 101.50 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 -5.74 0.80 102.40 96.66 A A A C3' C2' C1' DT DT DT 7 7 7 N 1 7.40 0.30 108.30 115.70 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 5.18 0.60 114.60 119.78 A A A N1 C2 N3 DT DT DT 7 7 7 N 1 -5.54 0.60 127.20 121.66 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 -11.40 1.50 119.60 108.20 A A A OP1 P OP2 DT DT DT 8 8 8 N 1 9.18 1.20 110.70 119.88 A A A O5' P OP2 DT DT DT 8 8 8 N 1 3.62 0.30 108.30 111.92 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 4.05 0.60 114.60 118.65 A A A N1 C2 N3 DT DT DT 8 8 8 N 1 -5.54 0.60 127.20 121.66 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 3.93 0.60 115.20 119.13 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -5.06 0.80 123.10 118.04 A A A N1 C2 O2 DT DT DT 8 8 8 N 1 13.64 1.20 119.70 133.34 A A A C3' O3' P DT DT DC 8 8 9 Y 1 -12.06 1.50 119.60 107.54 A A A OP1 P OP2 DC DC DC 9 9 9 N 1 6.63 1.10 109.80 116.43 A A A C5' C4' O4' DC DC DC 9 9 9 N 1 -8.85 0.70 102.20 93.35 A A A C4' C3' C2' DC DC DC 9 9 9 N 1 2.32 0.30 108.30 110.62 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 11.23 1.20 119.70 130.93 A A A C3' O3' P DC DC DG 9 9 10 Y 1 8.92 1.20 110.70 119.62 A A A O5' P OP2 DG DG DG 10 10 10 N 1 -6.33 0.80 109.40 103.07 A A A O5' C5' C4' DG DG DG 10 10 10 N 1 -8.50 1.00 110.10 101.60 A A A C1' O4' C4' DG DG DG 10 10 10 N 1 -6.98 0.80 105.90 98.92 A A A O4' C1' C2' DG DG DG 10 10 10 N 1 -5.10 0.60 128.60 123.50 A A A C5 C6 O6 DG DG DG 10 10 10 N 1 -11.29 1.50 119.60 108.31 A A A OP1 P OP2 DC DC DC 11 11 11 N 1 7.96 1.20 110.70 118.66 A A A O5' P OP2 DC DC DC 11 11 11 N 1 10.43 0.30 108.30 118.73 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 13.21 1.20 119.70 132.91 A A A C3' O3' P DC DC DG 11 11 12 Y 1 7.65 1.20 110.70 118.35 A A A O5' P OP2 DG DG DG 12 12 12 N 1 9.95 1.60 120.90 130.85 A A A P O5' C5' DG DG DG 12 12 12 N 1 -9.94 1.00 110.10 100.16 A A A C1' O4' C4' DG DG DG 12 12 12 N 1 2.21 0.30 108.30 110.51 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 -4.13 0.60 125.10 120.97 A A A C6 N1 C2 DG DG DG 12 12 12 N 1 3.74 0.50 111.50 115.24 A A A C5 C6 N1 DG DG DG 12 12 12 N 1 -3.45 0.40 104.50 101.05 B B B O4' C4' C3' DC DC DC 13 13 13 N 1 5.21 0.60 118.90 124.11 B B B N1 C2 O2 DC DC DC 13 13 13 N 1 8.77 1.20 119.70 128.47 B B B C3' O3' P DC DC DG 13 13 14 Y 1 -9.99 1.50 119.60 109.61 B B B OP1 P OP2 DG DG DG 14 14 14 N 1 11.60 1.20 110.70 122.30 B B B O5' P OP2 DG DG DG 14 14 14 N 1 -7.40 0.80 109.40 102.00 B B B O5' C5' C4' DG DG DG 14 14 14 N 1 4.25 0.30 108.30 112.55 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -4.91 0.60 125.10 120.19 B B B C6 N1 C2 DG DG DG 14 14 14 N 1 4.27 0.60 123.90 128.17 B B B N1 C2 N3 DG DG DG 14 14 14 N 1 3.30 0.50 111.50 114.80 B B B C5 C6 N1 DG DG DG 14 14 14 N 1 7.74 1.20 110.70 118.44 B B B O5' P OP2 DC DC DC 15 15 15 N 1 -6.35 1.00 110.10 103.75 B B B C1' O4' C4' DC DC DC 15 15 15 N 1 3.22 0.50 119.90 123.12 B B B C2 N3 C4 DC DC DC 15 15 15 N 1 -2.60 0.40 121.90 119.30 B B B N3 C4 C5 DC DC DC 15 15 15 N 1 5.13 0.60 118.90 124.03 B B B N1 C2 O2 DC DC DC 15 15 15 N 1 -10.38 1.20 119.70 109.32 B B B C3' O3' P DC DC G36 15 15 16 Y 1 -5.79 0.80 109.40 103.61 B B B O5' C5' C4' DA DA DA 17 17 17 N 1 2.21 0.30 108.30 110.51 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 4.66 0.60 118.60 123.26 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -5.18 0.50 129.30 124.12 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 -11.35 1.20 119.70 108.35 B B B C3' O3' P DA DA DA 17 17 18 Y 1 7.23 1.20 110.70 117.93 B B B O5' P OP1 DA DA DA 18 18 18 N 1 -6.05 0.80 109.40 103.35 B B B O5' C5' C4' DA DA DA 18 18 18 N 1 -7.45 0.80 105.90 98.45 B B B O4' C1' C2' DA DA DA 18 18 18 N 1 10.21 0.30 108.30 118.51 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 -4.39 0.50 129.30 124.91 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 3.06 0.50 110.60 113.66 B B B C2 N3 C4 DA DA DA 18 18 18 N 1 -2.74 0.40 105.80 103.06 B B B C8 N9 C4 DA DA DA 18 18 18 N 1 9.56 1.20 119.70 129.26 B B B C3' O3' P DA DA DT 18 18 19 Y 1 -10.77 1.50 119.60 108.83 B B B OP1 P OP2 DT DT DT 19 19 19 N 1 -10.79 0.80 109.40 98.61 B B B O5' C5' C4' DT DT DT 19 19 19 N 1 4.46 0.30 108.30 112.76 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.32 0.60 127.20 122.88 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 3.84 0.60 115.20 119.04 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 3.94 0.60 122.90 126.84 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 10.04 1.50 120.40 130.44 B B B C6 N1 C1' DT DT DT 20 20 20 N 1 13.28 1.20 119.70 132.98 B B B C3' O3' P DT DT DC 20 20 21 Y 1 -3.57 0.40 104.50 100.93 B B B O4' C4' C3' DC DC DC 21 21 21 N 1 7.42 1.20 115.70 123.12 B B B C5' C4' C3' DC DC DC 21 21 21 N 1 6.01 0.30 108.30 114.31 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 -3.87 0.40 121.90 118.03 B B B N3 C4 C5 DC DC DC 21 21 21 N 1 4.67 0.60 118.90 123.57 B B B N1 C2 O2 DC DC DC 21 21 21 N 1 -5.38 0.70 121.90 116.52 B B B N3 C2 O2 DC DC DC 21 21 21 N 1 4.20 0.70 120.20 124.40 B B B C5 C4 N4 DC DC DC 21 21 21 N 1 8.98 1.20 119.70 128.68 B B B C3' O3' P DC DC DG 21 21 22 Y 1 8.17 1.20 110.70 118.87 B B B O5' P OP2 DG DG DG 22 22 22 N 1 -4.77 0.70 102.20 97.43 B B B C4' C3' C2' DG DG DG 22 22 22 N 1 2.43 0.30 108.30 110.73 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -4.82 0.60 119.90 115.08 B B B N1 C6 O6 DG DG DG 22 22 22 N 1 7.45 1.10 110.50 117.95 B B B O3' P OP1 DG DC DC 22 23 23 Y 1 -4.33 0.70 121.90 117.57 B B B N3 C2 O2 DC DC DC 23 23 23 N 1 -9.00 1.50 119.60 110.60 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 8.94 1.20 110.70 119.64 B B B O5' P OP1 DG DG DG 24 24 24 N 1 -3.85 0.60 125.10 121.25 B B B C6 N1 C2 DG DG DG 24 24 24 N 1 3.81 0.50 111.50 115.31 B B B C5 C6 N1 DG DG DG 24 24 24 N 1 -4.61 0.60 128.60 123.99 B B B C5 C6 O6 DG DG DG 24 24 24 N 1 A A O4' C1' DA DA 6 6 0.070 0.011 1.420 1.490 N 1 A A O4' C1' DG DG 10 10 0.100 0.011 1.420 1.520 N 1 A A O4' C1' DG DG 12 12 0.070 0.011 1.420 1.490 N 1 B B O3' P DC G36 15 16 0.092 0.012 1.607 1.699 Y 1 B B O3' P DA DA 17 18 0.076 0.012 1.607 1.683 Y 1 B B P O5' DT DT 20 20 0.082 0.010 1.593 1.675 N 1 B B C6 N1 DT DT 20 20 -0.053 0.007 1.378 1.325 N 1 B B P O5' DC DC 23 23 0.088 0.010 1.593 1.681 N 1 A B OP2 O DG HOH 12 77 1.89 1_555 4_565 0.156 2.500 1514 1 2.000 TR isotropic TR isotropic 2.500 89 610 35 486 0 0.019 fix fix 2.000 1D85 1 refinement NUCLSQ STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX 1 N N 1 N N 2 N N 3 N N 3 N N covale 1.649 both A DC 3 A O3' DC 3 1_555 A G36 4 A P G36 4 1_555 covale 1.569 one A G36 4 A O3' G36 4 1_555 A DA 5 A P DA 5 1_555 covale 1.699 both B DC 15 B O3' DC 3 1_555 B G36 16 B P G36 4 1_555 covale 1.647 one B G36 16 B O3' G36 4 1_555 B DA 17 B P DA 5 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog G36-DC PAIR A G36 4 A N1 G36 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog DA-DT PAIR A DA 5 A N6 DA 5 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog DC-G36 PAIR A DC 9 A N3 DC 9 1_555 B G36 16 B N2 G36 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA 1D85 PDB 1 1D85 1 12 1D85 1 12 1D85 A 1 1 12 13 24 1D85 13 24 1D85 B 1 1 12 BINDING SITE FOR RESIDUE NT B 25 B NT 25 Software 9 A DA 6 A DA 6 9 1_555 A DT 7 A DT 7 9 1_555 A DC 9 A DC 9 9 1_555 A DG 12 A DG 12 9 2_665 B DT 19 B DT 7 9 1_555 B DT 20 B DT 8 9 1_555 B DC 21 B DC 9 9 1_555 B DG 22 B DG 10 9 1_555 B HOH 86 E HOH 9 1_555 19 P 21 21 21