0.036364 0.000000 0.000000 0.000000 0.022609 0.000000 0.000000 0.000000 0.022417 0.00000 0.00000 0.00000 Egli, M. Usman, N. Rich, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.500 44.230 44.610 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 R C N 155 N O N 156 R C Y 157 N N Y 158 N C Y 159 N N Y 160 N C N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N sing Y 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing US Biochemistry BICHAW 0033 0006-2960 32 3221 3237 10.1021/bi00064a004 7681688 Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. 1993 UK Nucleic Acids Res. NARHAD 0389 0305-1048 20 6695 6699 Large Scale Chemical Synthesis, Purification and Crystallization of RNA-DNA Chimeras 1992 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 89 534 538 Crystal Structure of an Okazaki Fragment at 2 Angstroms Resolution 1992 10.2210/pdb1d87/pdb pdb_00001d87 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3061.005 DNA/RNA (5'-R(*GP*)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3') 2 syn polymer 18.015 water 110 nat water no no G(DC)(DG)(DT)(DA)(DT)(DA)(DC)(DG)(DC) GCGTATACGC A,B polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n 2.22 44.49 VAPOR DIFFUSION, SITTING DROP 6.00 pH 6.00, VAPOR DIFFUSION, SITTING DROP, temperature 291.00K 291.00 WATER 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 -3.059 1 19 A 1 B 20 -2.373 A_G1:DC20_B 1 -19.256 0.517 -0.139 -0.253 0.437 1 19 A 2 B 19 2.997 A_DC2:DG19_B 2 -16.241 0.044 0.006 -0.043 -13.184 1 19 A 3 B 18 -3.372 A_DG3:DC18_B 3 -11.151 0.354 -0.448 -0.078 4.287 1 20 A 4 B 17 -1.750 A_DT4:DA17_B 4 -16.958 -1.095 -0.551 -0.219 4.207 1 20 A 5 B 16 -15.461 A_DA5:DT16_B 5 -10.276 1.331 0.683 0.076 9.419 1 20 A 6 B 15 -4.498 A_DT6:DA15_B 6 6.512 -1.205 0.014 -0.001 -9.066 1 20 A 7 B 14 -0.148 A_DA7:DT14_B 7 -27.165 0.693 -0.928 -0.123 8.246 1 19 A 8 B 13 -4.451 A_DC8:DG13_B 8 -10.975 1.386 -0.420 -0.815 -11.369 1 19 A 9 B 12 3.164 A_DG9:DC12_B 9 -17.203 -0.472 0.090 -0.030 -3.416 1 19 A 10 B 11 0.118 A_DC10:G11_B 10 17.271 0.137 0.548 -0.282 2.576 29.852 A A 1 2 17.220 B B 20 19 3.214 8.741 1.255 -1.488 AA_G1DC2:DG19DC20_BB 1 -1.720 3.389 28.521 -4.535 -2.761 4.141 29.196 A A 2 3 -1.423 B B 19 18 4.125 -0.717 -0.271 -1.195 AA_DC2DG3:DC18DG19_BB 2 1.053 -2.089 29.169 -2.173 0.826 2.037 36.071 A A 3 4 13.861 B B 18 17 2.644 8.499 -0.994 -2.006 AA_DG3DT4:DA17DC18_BB 3 2.711 -4.422 34.985 -4.115 1.885 2.652 38.033 A A 4 5 24.197 B B 17 16 3.663 15.287 0.544 -1.521 AA_DT4DA5:DT16DA17_BB 4 -5.948 9.414 34.433 -4.313 -1.604 2.251 23.653 A A 5 6 19.859 B B 16 15 3.307 7.895 0.344 -2.562 AA_DA5DT6:DA15DT16_BB 5 6.000 -15.091 21.501 -8.592 0.940 2.938 42.122 A A 6 7 29.039 B B 15 14 3.828 19.970 0.870 -1.203 AA_DT6DA7:DT14DA15_BB 6 7.887 -11.469 36.454 -3.978 -0.300 2.553 35.041 A A 7 8 7.371 B B 14 13 2.803 4.427 0.818 -1.933 AA_DA7DC8:DG13DT14_BB 7 0.373 -0.621 34.767 -3.757 -1.313 3.547 23.246 A A 8 9 10.635 B B 13 12 3.826 4.262 0.096 -1.201 AA_DC8DG9:DC12DG13_BB 8 0.163 -0.408 22.856 -4.649 -0.173 3.228 40.230 A A 9 10 12.560 B B 12 11 3.407 8.507 -0.900 -1.084 AA_DG9DC10:G11DC12_BB 9 -9.201 13.586 38.306 -2.580 0.222 chem_comp_atom chem_comp_bond database_2 struct_keywords repository Initial release Version format compliance Version format compliance Data collection Database references Structure summary 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_keywords.text BNL Y NDB 1992-08-28 REL HOH water HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 44 2 HOH HOH 44 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 51 2 HOH HOH 51 A HOH 60 2 HOH HOH 60 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 66 2 HOH HOH 66 A HOH 69 2 HOH HOH 69 A HOH 71 2 HOH HOH 71 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A HOH 78 2 HOH HOH 78 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 88 2 HOH HOH 88 A HOH 93 2 HOH HOH 93 A HOH 95 2 HOH HOH 95 A HOH 96 2 HOH HOH 96 A HOH 97 2 HOH HOH 97 A HOH 98 2 HOH HOH 98 A HOH 99 2 HOH HOH 99 A HOH 101 2 HOH HOH 101 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A HOH 112 2 HOH HOH 112 A HOH 113 2 HOH HOH 113 A HOH 114 2 HOH HOH 114 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 119 2 HOH HOH 119 A HOH 121 2 HOH HOH 121 A HOH 122 2 HOH HOH 122 A HOH 123 2 HOH HOH 123 A HOH 124 2 HOH HOH 124 A HOH 126 2 HOH HOH 126 A HOH 130 2 HOH HOH 130 A HOH 27 2 HOH HOH 27 B HOH 28 2 HOH HOH 28 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 37 2 HOH HOH 37 B HOH 41 2 HOH HOH 41 B HOH 42 2 HOH HOH 42 B HOH 43 2 HOH HOH 43 B HOH 45 2 HOH HOH 45 B HOH 50 2 HOH HOH 50 B HOH 52 2 HOH HOH 52 B HOH 53 2 HOH HOH 53 B HOH 54 2 HOH HOH 54 B HOH 55 2 HOH HOH 55 B HOH 56 2 HOH HOH 56 B HOH 57 2 HOH HOH 57 B HOH 58 2 HOH HOH 58 B HOH 59 2 HOH HOH 59 B HOH 61 2 HOH HOH 61 B HOH 64 2 HOH HOH 64 B HOH 65 2 HOH HOH 65 B HOH 67 2 HOH HOH 67 B HOH 68 2 HOH HOH 68 B HOH 70 2 HOH HOH 70 B HOH 72 2 HOH HOH 72 B HOH 85 2 HOH HOH 85 B HOH 86 2 HOH HOH 86 B HOH 87 2 HOH HOH 87 B HOH 89 2 HOH HOH 89 B HOH 90 2 HOH HOH 90 B HOH 91 2 HOH HOH 91 B HOH 92 2 HOH HOH 92 B HOH 94 2 HOH HOH 94 B HOH 100 2 HOH HOH 100 B HOH 102 2 HOH HOH 102 B HOH 103 2 HOH HOH 103 B HOH 104 2 HOH HOH 104 B HOH 105 2 HOH HOH 105 B HOH 106 2 HOH HOH 106 B HOH 107 2 HOH HOH 107 B HOH 108 2 HOH HOH 108 B HOH 109 2 HOH HOH 109 B HOH 117 2 HOH HOH 117 B HOH 118 2 HOH HOH 118 B HOH 120 2 HOH HOH 120 B HOH 125 2 HOH HOH 125 B HOH 127 2 HOH HOH 127 B HOH 128 2 HOH HOH 128 B HOH 129 2 HOH HOH 129 B G 1 n 1 G 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 G 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B T 14 n 4 DT 14 B A 15 n 5 DA 15 B T 16 n 6 DT 16 B A 17 n 7 DA 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -5.75 0.60 125.10 119.35 A A A C6 N1 C2 G G G 1 1 1 N 1 5.01 0.60 123.90 128.91 A A A N1 C2 N3 G G G 1 1 1 N 1 5.42 0.50 111.50 116.92 A A A C5 C6 N1 G G G 1 1 1 N 1 -8.88 0.70 119.90 111.02 A A A N3 C2 N2 G G G 1 1 1 N 1 -5.79 0.60 128.60 122.81 A A A C5 C6 O6 G G G 1 1 1 N 1 -9.98 0.90 105.70 95.72 A A A O5' P OP1 DC DC DC 2 2 2 N 1 -5.14 0.80 109.40 104.26 A A A O5' C5' C4' DC DC DC 2 2 2 N 1 -9.81 1.60 120.90 111.09 A A A P O5' C5' DC DC DC 2 2 2 N 1 -4.36 0.40 104.50 100.14 A A A O4' C4' C3' DC DC DC 2 2 2 N 1 4.83 0.50 119.90 124.73 A A A C2 N3 C4 DC DC DC 2 2 2 N 1 -5.06 0.40 121.90 116.84 A A A N3 C4 C5 DC DC DC 2 2 2 N 1 3.21 0.50 121.00 124.21 A A A C5 C6 N1 DC DC DC 2 2 2 N 1 5.79 0.60 118.90 124.69 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 4.81 0.70 120.20 125.01 A A A C5 C4 N4 DC DC DC 2 2 2 N 1 7.92 1.20 119.70 127.62 A A A C3' O3' P DC DC DG 2 2 3 Y 1 -9.14 0.90 105.70 96.56 A A A O5' P OP1 DG DG DG 3 3 3 N 1 -2.84 0.40 104.50 101.66 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 -5.81 0.60 125.10 119.29 A A A C6 N1 C2 DG DG DG 3 3 3 N 1 4.93 0.60 123.90 128.83 A A A N1 C2 N3 DG DG DG 3 3 3 N 1 5.98 0.50 111.50 117.48 A A A C5 C6 N1 DG DG DG 3 3 3 N 1 -7.84 0.70 119.90 112.06 A A A N3 C2 N2 DG DG DG 3 3 3 N 1 -5.65 0.60 128.60 122.95 A A A C5 C6 O6 DG DG DG 3 3 3 N 1 -9.95 0.90 105.70 95.75 A A A O5' P OP2 DT DT DT 4 4 4 N 1 -6.07 0.80 109.40 103.33 A A A O5' C5' C4' DT DT DT 4 4 4 N 1 -11.87 1.60 120.90 109.03 A A A P O5' C5' DT DT DT 4 4 4 N 1 -4.71 0.40 104.50 99.79 A A A O4' C4' C3' DT DT DT 4 4 4 N 1 -4.81 0.70 102.20 97.39 A A A C4' C3' C2' DT DT DT 4 4 4 N 1 5.43 0.60 119.00 124.43 A A A C4 C5 C7 DT DT DT 4 4 4 N 1 -6.56 0.60 122.90 116.34 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 -6.48 0.90 105.70 99.22 A A A O5' P OP1 DA DA DA 5 5 5 N 1 -2.93 0.40 104.50 101.57 A A A O4' C4' C3' DA DA DA 5 5 5 N 1 -5.41 0.70 102.20 96.79 A A A C4' C3' C2' DA DA DA 5 5 5 N 1 -6.37 0.80 102.40 96.03 A A A C3' C2' C1' DA DA DA 5 5 5 N 1 11.28 1.20 119.70 130.98 A A A C3' O3' P DA DA DT 5 5 6 Y 1 -8.31 0.90 105.70 97.39 A A A O5' P OP1 DT DT DT 6 6 6 N 1 -4.64 0.60 122.90 118.26 A A A C6 C5 C7 DT DT DT 6 6 6 N 1 -7.74 0.90 105.70 97.96 A A A O5' P OP1 DA DA DA 7 7 7 N 1 -14.22 1.60 120.90 106.68 A A A P O5' C5' DA DA DA 7 7 7 N 1 -5.90 0.70 102.20 96.30 A A A C4' C3' C2' DA DA DA 7 7 7 N 1 -4.95 0.80 105.90 100.95 A A A O4' C1' C2' DA DA DA 7 7 7 N 1 4.93 0.30 108.30 113.23 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 31.71 1.20 119.70 151.41 A A A C3' O3' P DA DA DC 7 7 8 Y 1 11.91 1.90 104.00 115.91 A A A O3' P O5' DA DC DC 7 8 8 Y 1 -7.74 0.90 105.70 97.96 A A A O5' P OP1 DC DC DC 8 8 8 N 1 -4.02 0.40 104.50 100.48 A A A O4' C4' C3' DC DC DC 8 8 8 N 1 7.67 1.20 115.70 123.37 A A A C5' C4' C3' DC DC DC 8 8 8 N 1 -4.67 0.70 108.00 103.33 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 5.24 0.50 119.90 125.14 A A A C2 N3 C4 DC DC DC 8 8 8 N 1 -4.50 0.40 121.90 117.40 A A A N3 C4 C5 DC DC DC 8 8 8 N 1 4.99 0.60 118.90 123.89 A A A N1 C2 O2 DC DC DC 8 8 8 N 1 11.82 1.90 104.00 115.82 A A A O3' P O5' DC DG DG 8 9 9 Y 1 -9.57 0.80 109.40 99.83 A A A O5' C5' C4' DG DG DG 9 9 9 N 1 -4.54 0.40 104.50 99.96 A A A O4' C4' C3' DG DG DG 9 9 9 N 1 -7.11 0.70 102.20 95.09 A A A C4' C3' C2' DG DG DG 9 9 9 N 1 5.50 0.30 108.30 113.80 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 -5.67 0.60 125.10 119.43 A A A C6 N1 C2 DG DG DG 9 9 9 N 1 5.54 0.60 123.90 129.44 A A A N1 C2 N3 DG DG DG 9 9 9 N 1 -3.16 0.50 111.90 108.74 A A A C2 N3 C4 DG DG DG 9 9 9 N 1 5.58 0.50 111.50 117.08 A A A C5 C6 N1 DG DG DG 9 9 9 N 1 -10.92 0.70 119.90 108.98 A A A N3 C2 N2 DG DG DG 9 9 9 N 1 10.27 1.20 119.70 129.97 A A A C3' O3' P DG DG DC 9 9 10 Y 1 -6.91 0.90 105.70 98.79 A A A O5' P OP1 DC DC DC 10 10 10 N 1 4.63 0.50 119.90 124.53 A A A C2 N3 C4 DC DC DC 10 10 10 N 1 -4.39 0.40 121.90 117.51 A A A N3 C4 C5 DC DC DC 10 10 10 N 1 4.38 0.50 121.00 125.38 A A A C5 C6 N1 DC DC DC 10 10 10 N 1 6.64 0.60 118.90 125.54 A A A N1 C2 O2 DC DC DC 10 10 10 N 1 -5.76 0.60 125.10 119.34 B B B C6 N1 C2 G G G 11 11 11 N 1 4.83 0.60 123.90 128.73 B B B N1 C2 N3 G G G 11 11 11 N 1 5.84 0.50 111.50 117.34 B B B C5 C6 N1 G G G 11 11 11 N 1 -8.06 0.70 119.90 111.84 B B B N3 C2 N2 G G G 11 11 11 N 1 -5.75 0.60 128.60 122.85 B B B C5 C6 O6 G G G 11 11 11 N 1 8.07 1.20 119.70 127.77 B B B C3' O3' P G G DC 11 11 12 Y 1 -9.05 0.90 105.70 96.65 B B B O5' P OP1 DC DC DC 12 12 12 N 1 4.73 0.50 119.90 124.63 B B B C2 N3 C4 DC DC DC 12 12 12 N 1 -5.54 0.40 121.90 116.36 B B B N3 C4 C5 DC DC DC 12 12 12 N 1 4.96 0.60 118.90 123.86 B B B N1 C2 O2 DC DC DC 12 12 12 N 1 5.67 0.70 120.20 125.87 B B B C5 C4 N4 DC DC DC 12 12 12 N 1 -11.02 0.40 104.50 93.48 B B B O4' C4' C3' DG DG DG 13 13 13 N 1 6.62 1.10 109.80 116.42 B B B C5' C4' O4' DG DG DG 13 13 13 N 1 -5.96 0.60 125.10 119.14 B B B C6 N1 C2 DG DG DG 13 13 13 N 1 5.83 0.60 123.90 129.73 B B B N1 C2 N3 DG DG DG 13 13 13 N 1 5.62 0.50 111.50 117.12 B B B C5 C6 N1 DG DG DG 13 13 13 N 1 -7.93 0.70 119.90 111.97 B B B N3 C2 N2 DG DG DG 13 13 13 N 1 -4.87 0.60 128.60 123.73 B B B C5 C6 O6 DG DG DG 13 13 13 N 1 -10.27 1.20 119.70 109.43 B B B C3' O3' P DG DG DT 13 13 14 Y 1 -2.74 0.40 104.50 101.76 B B B O4' C4' C3' DT DT DT 14 14 14 N 1 -5.14 0.80 102.40 97.26 B B B C3' C2' C1' DT DT DT 14 14 14 N 1 3.47 0.30 108.30 111.77 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 3.74 0.60 119.00 122.74 B B B C4 C5 C7 DT DT DT 14 14 14 N 1 -3.76 0.60 122.90 119.14 B B B C6 C5 C7 DT DT DT 14 14 14 N 1 13.14 1.20 119.70 132.84 B B B C3' O3' P DT DT DA 14 14 15 Y 1 -8.73 0.90 105.70 96.97 B B B O5' P OP1 DA DA DA 15 15 15 N 1 -12.25 1.60 120.90 108.65 B B B P O5' C5' DA DA DA 15 15 15 N 1 4.18 0.30 108.30 112.48 B B B O4' C1' N9 DA DA DA 15 15 15 N 1 -8.45 0.90 105.70 97.25 B B B O5' P OP1 DT DT DT 16 16 16 N 1 -10.74 1.60 120.90 110.16 B B B P O5' C5' DT DT DT 16 16 16 N 1 -6.80 0.40 104.50 97.70 B B B O4' C4' C3' DT DT DT 16 16 16 N 1 8.97 1.20 115.70 124.67 B B B C5' C4' C3' DT DT DT 16 16 16 N 1 -5.90 0.70 102.20 96.30 B B B C4' C3' C2' DT DT DT 16 16 16 N 1 -4.08 0.60 127.20 123.12 B B B C2 N3 C4 DT DT DT 16 16 16 N 1 -8.13 0.90 105.70 97.57 B B B O5' P OP2 DA DA DA 17 17 17 N 1 -10.06 0.90 105.70 95.64 B B B O5' P OP1 DC DC DC 18 18 18 N 1 5.10 0.50 119.90 125.00 B B B C2 N3 C4 DC DC DC 18 18 18 N 1 -4.91 0.40 121.90 116.99 B B B N3 C4 C5 DC DC DC 18 18 18 N 1 3.93 0.50 121.00 124.93 B B B C5 C6 N1 DC DC DC 18 18 18 N 1 6.84 0.60 118.90 125.74 B B B N1 C2 O2 DC DC DC 18 18 18 N 1 -6.81 0.90 105.70 98.89 B B B O5' P OP2 DG DG DG 19 19 19 N 1 -14.80 1.60 120.90 106.10 B B B P O5' C5' DG DG DG 19 19 19 N 1 7.50 1.10 109.80 117.30 B B B C5' C4' O4' DG DG DG 19 19 19 N 1 1.82 0.30 108.30 110.12 B B B O4' C1' N9 DG DG DG 19 19 19 N 1 -5.37 0.60 125.10 119.73 B B B C6 N1 C2 DG DG DG 19 19 19 N 1 5.77 0.60 123.90 129.67 B B B N1 C2 N3 DG DG DG 19 19 19 N 1 -3.31 0.50 111.90 108.59 B B B C2 N3 C4 DG DG DG 19 19 19 N 1 5.37 0.50 111.50 116.87 B B B C5 C6 N1 DG DG DG 19 19 19 N 1 -9.02 0.70 119.90 110.88 B B B N3 C2 N2 DG DG DG 19 19 19 N 1 -4.18 0.60 128.60 124.42 B B B C5 C6 O6 DG DG DG 19 19 19 N 1 -8.52 0.90 105.70 97.18 B B B O5' P OP2 DC DC DC 20 20 20 N 1 -5.04 0.80 105.90 100.86 B B B O4' C1' C2' DC DC DC 20 20 20 N 1 9.68 1.40 114.30 123.98 B B B N1 C1' C2' DC DC DC 20 20 20 N 1 -2.57 0.40 120.30 117.73 B B B C6 N1 C2 DC DC DC 20 20 20 N 1 5.98 0.50 119.90 125.88 B B B C2 N3 C4 DC DC DC 20 20 20 N 1 -5.31 0.40 121.90 116.59 B B B N3 C4 C5 DC DC DC 20 20 20 N 1 5.55 0.50 121.00 126.55 B B B C5 C6 N1 DC DC DC 20 20 20 N 1 4.72 0.60 118.90 123.62 B B B N1 C2 O2 DC DC DC 20 20 20 N 1 4.53 0.70 118.00 122.53 B B B N3 C4 N4 DC DC DC 20 20 20 N 1 A A C6 N1 G G 1 1 -0.056 0.007 1.391 1.335 N 1 A A C2 N2 G G 1 1 -0.104 0.010 1.341 1.237 N 1 A A O3' C3' DC DC 2 2 -0.050 0.006 1.419 1.369 N 1 A A N3 C4 DC DC 2 2 0.047 0.007 1.335 1.382 N 1 A A O3' C3' DG DG 3 3 -0.068 0.006 1.419 1.351 N 1 A A C6 N1 DG DG 3 3 -0.059 0.007 1.391 1.332 N 1 A A C2 N2 DG DG 3 3 -0.092 0.010 1.341 1.249 N 1 A A C4' C3' DT DT 4 4 0.070 0.010 1.529 1.599 N 1 A A C2' C1' DT DT 4 4 0.064 0.010 1.519 1.583 N 1 A A O3' C3' DT DT 4 4 -0.083 0.006 1.419 1.336 N 1 A A O3' C3' DA DA 5 5 -0.072 0.006 1.419 1.347 N 1 A A P O5' DA DA 7 7 0.071 0.010 1.593 1.664 N 1 A A C4' C3' DA DA 7 7 0.065 0.010 1.529 1.594 N 1 A A C2' C1' DA DA 7 7 0.127 0.010 1.519 1.646 N 1 A A O3' C3' DA DA 7 7 -0.085 0.006 1.419 1.334 N 1 A A O3' C3' DC DC 8 8 -0.051 0.006 1.419 1.368 N 1 A A C2' C1' DG DG 9 9 0.082 0.010 1.519 1.601 N 1 A A O3' C3' DG DG 9 9 -0.042 0.006 1.419 1.377 N 1 A A C6 N1 DG DG 9 9 -0.049 0.007 1.391 1.342 N 1 A A C2 N2 DG DG 9 9 -0.113 0.010 1.341 1.228 N 1 A A N3 C4 DC DC 10 10 0.049 0.007 1.335 1.384 N 1 B B C6 N1 G G 11 11 -0.059 0.007 1.391 1.332 N 1 B B C2 N2 G G 11 11 -0.108 0.010 1.341 1.233 N 1 B B P O5' DC DC 12 12 0.067 0.010 1.593 1.660 N 1 B B C3' C2' DC DC 12 12 -0.066 0.008 1.516 1.450 N 1 B B N3 C4 DC DC 12 12 0.052 0.007 1.335 1.387 N 1 B B C6 N1 DG DG 13 13 -0.059 0.007 1.391 1.332 N 1 B B C2 N2 DG DG 13 13 -0.110 0.010 1.341 1.231 N 1 B B O3' C3' DT DT 14 14 -0.090 0.006 1.419 1.329 N 1 B B N3 C4 DC DC 18 18 0.048 0.007 1.335 1.383 N 1 B B C3' C2' DG DG 19 19 -0.050 0.008 1.516 1.466 N 1 B B O4' C4' DG DG 19 19 -0.066 0.010 1.446 1.380 N 1 B B C6 N1 DG DG 19 19 -0.056 0.007 1.391 1.335 N 1 B B C2 N2 DG DG 19 19 -0.114 0.010 1.341 1.227 N 1 A B O O HOH HOH 34 127 1.52 1_555 1_655 1 A B O O HOH HOH 35 117 1.65 1_555 1_655 1 A B O O HOH HOH 24 52 1.75 1_555 1_655 1 A B O O HOH HOH 63 104 1.81 1_555 4_565 1 A B O2 N2 DT G 4 11 1.98 1_555 2_664 1 A B O O HOH HOH 35 54 2.15 1_555 1_655 0.1780000 2.250 1592 1 2.000 TR isotropic TR isotropic 2.250 110 516 0 406 0 0.020 0.010 0.140 fix fix 2.250 1D87 1592 2.000 1 refinement PROLSQ (MODIFIED BY G.J.QUIGLEY) refinement MODIFIED BY G.J.QUIGLEY CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog DT-DC MISPAIR A DT 4 A N3 DT 4 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog DC-DT MISPAIR A DC 8 A O2 DC 8 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B G 11 B N1 G 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B G 11 B O6 G 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B G 11 B N2 G 1 1_555 DNA-RNA HYBRID A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID 1D87 PDB 1 1D87 1 10 1D87 1 10 1D87 A 1 1 10 11 20 1D87 11 20 1D87 B 1 1 10 19 P 21 21 21