0.039604 0.000000 0.000000 0.000000 0.021868 0.000000 0.000000 0.000000 0.021820 0.00000 0.00000 0.00000 Egli, M. Usman, N. Rich, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.250 45.730 45.830 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C Y 50 N N Y 51 N C Y 52 N N Y 53 N C Y 54 N C N 55 N N Y 56 N N Y 57 N C Y 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N C N 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C Y 120 N N Y 121 N C Y 122 N N Y 123 N C N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N N Y 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 N C N 156 R C N 157 N N N 158 N C N 159 N O N 160 N N N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N H N 183 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N sing Y 68 N sing Y 69 N doub N 70 N sing Y 71 N doub N 72 N sing N 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N doub N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing US Biochemistry BICHAW 0033 0006-2960 32 3221 3237 10.1021/bi00064a004 7681688 Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. 1993 UK Nucleic Acids Res. NARHAD 0389 0305-1048 20 6695 6699 Large Scale Chemical Synthesis, Purification and Crystallization of RNA-DNA Chimeras 1992 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 89 534 538 Crystal Structure of an Okazaki Fragment at 2 Angstroms Resolution 1992 10.2210/pdb1d88/pdb pdb_00001d88 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3061.004 DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*AP*)-D(*TP*AP*CP*GP*C)-3') 2 syn polymer 18.015 water 94 nat water no no (DG)(DC)(DG)(DT)A(DT)(DA)(DC)(DG)(DC) GCGTATACGC A,B polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n 2.16 43.08 VAPOR DIFFUSION, SITTING DROP 6.00 pH 6.00, VAPOR DIFFUSION, SITTING DROP, temperature 291.00K 291.00 WATER 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 3.102 1 19 A 1 B 20 1.757 A_DG1:DC20_B 1 -9.175 1.062 0.522 -0.262 12.606 1 19 A 2 B 19 -1.642 A_DC2:DG19_B 2 -27.719 0.140 0.200 -0.246 -0.705 1 19 A 3 B 18 1.684 A_DG3:DC18_B 3 -14.053 0.110 0.262 -0.129 3.430 1 20 A 4 B 17 -2.949 A_DT4:DA17_B 4 -20.423 -0.079 -0.596 -0.129 -8.314 1 20 A 5 B 16 0.894 A_A5:DT16_B 5 -22.622 -0.517 0.284 -0.176 8.556 1 20 A 6 B 15 3.603 A_DT6:A15_B 6 -10.917 -0.866 0.041 -0.221 8.861 1 20 A 7 B 14 12.357 A_DA7:DT14_B 7 -14.895 0.305 -0.005 -0.095 11.771 1 19 A 8 B 13 2.399 A_DC8:DG13_B 8 -15.292 0.635 0.232 -0.346 -10.520 1 19 A 9 B 12 1.175 A_DG9:DC12_B 9 -4.067 -0.165 -0.408 -0.045 7.168 1 19 A 10 B 11 0.076 A_DC10:DG11_B 10 -8.158 0.294 -0.660 -0.222 3.324 31.069 A A 1 2 -2.833 B B 20 19 3.318 -1.510 -0.203 -1.837 AA_DG1DC2:DG19DC20_BB 1 5.182 -9.721 30.608 -3.134 1.395 2.728 31.070 A A 2 3 17.147 B B 19 18 3.586 9.050 0.256 -2.404 AA_DC2DG3:DC18DG19_BB 2 -2.130 4.036 29.679 -6.203 -0.882 2.650 34.871 A A 3 4 17.035 B B 18 17 3.270 10.050 -1.528 -1.053 AA_DG3DT4:DA17DC18_BB 3 4.064 -6.889 33.193 -3.173 3.122 2.149 27.747 A A 4 5 34.529 B B 17 16 3.730 15.621 1.441 -1.649 AA_DT4A5:DT16DA17_BB 4 -0.688 1.522 22.993 -7.158 -3.170 2.585 29.832 A A 5 6 11.711 B B 16 15 2.866 5.989 0.682 -1.211 AA_A5DT6:A15DT16_BB 5 0.564 -1.102 29.233 -3.402 -1.227 2.397 39.782 A A 6 7 25.219 B B 15 14 3.184 16.658 0.397 -1.319 AA_DT6DA7:DT14A15_BB 6 2.751 -4.165 36.154 -3.674 -0.296 3.166 31.353 A A 7 8 4.696 B B 14 13 3.258 2.535 0.209 -1.109 AA_DA7DC8:DG13DT14_BB 7 1.356 -2.513 31.224 -2.522 -0.136 2.437 35.251 A A 8 9 30.434 B B 13 12 3.694 17.617 -0.425 -1.495 AA_DC8DG9:DC12DG13_BB 8 3.369 -5.821 30.472 -5.113 1.208 2.757 31.989 A A 9 10 11.884 B B 12 11 3.225 6.496 -0.111 -1.918 AA_DG9DC10:DG11DC12_BB 9 2.983 -5.457 31.200 -4.568 0.700 chem_comp_atom chem_comp_bond database_2 struct_keywords repository Initial release Version format compliance Version format compliance Data collection Database references Structure summary 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_keywords.text BNL Y NDB 1992-08-28 REL HOH water HOH 22 2 HOH HOH 22 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 30 2 HOH HOH 30 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 53 2 HOH HOH 53 A HOH 55 2 HOH HOH 55 A HOH 59 2 HOH HOH 59 A HOH 67 2 HOH HOH 67 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 71 2 HOH HOH 71 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A HOH 79 2 HOH HOH 79 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 85 2 HOH HOH 85 A HOH 88 2 HOH HOH 88 A HOH 91 2 HOH HOH 91 A HOH 93 2 HOH HOH 93 A HOH 95 2 HOH HOH 95 A HOH 96 2 HOH HOH 96 A HOH 98 2 HOH HOH 98 A HOH 99 2 HOH HOH 99 A HOH 100 2 HOH HOH 100 A HOH 102 2 HOH HOH 102 A HOH 108 2 HOH HOH 108 A HOH 111 2 HOH HOH 111 A HOH 112 2 HOH HOH 112 A HOH 113 2 HOH HOH 113 A HOH 114 2 HOH HOH 114 A HOH 21 2 HOH HOH 21 B HOH 23 2 HOH HOH 23 B HOH 26 2 HOH HOH 26 B HOH 29 2 HOH HOH 29 B HOH 31 2 HOH HOH 31 B HOH 36 2 HOH HOH 36 B HOH 48 2 HOH HOH 48 B HOH 49 2 HOH HOH 49 B HOH 52 2 HOH HOH 52 B HOH 54 2 HOH HOH 54 B HOH 56 2 HOH HOH 56 B HOH 57 2 HOH HOH 57 B HOH 58 2 HOH HOH 58 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 62 2 HOH HOH 62 B HOH 63 2 HOH HOH 63 B HOH 64 2 HOH HOH 64 B HOH 65 2 HOH HOH 65 B HOH 66 2 HOH HOH 66 B HOH 68 2 HOH HOH 68 B HOH 72 2 HOH HOH 72 B HOH 73 2 HOH HOH 73 B HOH 78 2 HOH HOH 78 B HOH 80 2 HOH HOH 80 B HOH 84 2 HOH HOH 84 B HOH 86 2 HOH HOH 86 B HOH 87 2 HOH HOH 87 B HOH 89 2 HOH HOH 89 B HOH 90 2 HOH HOH 90 B HOH 92 2 HOH HOH 92 B HOH 94 2 HOH HOH 94 B HOH 97 2 HOH HOH 97 B HOH 101 2 HOH HOH 101 B HOH 103 2 HOH HOH 103 B HOH 104 2 HOH HOH 104 B HOH 105 2 HOH HOH 105 B HOH 106 2 HOH HOH 106 B HOH 107 2 HOH HOH 107 B HOH 109 2 HOH HOH 109 B HOH 110 2 HOH HOH 110 B G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 A 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 DG 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B T 14 n 4 DT 14 B A 15 n 5 A 15 B T 16 n 6 DT 16 B A 17 n 7 DA 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O2 O DC HOH 20 109 2.15 1 4.38 0.30 108.30 112.68 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 -6.33 0.60 125.10 118.77 A A A C6 N1 C2 DG DG DG 1 1 1 N 1 5.06 0.60 123.90 128.96 A A A N1 C2 N3 DG DG DG 1 1 1 N 1 6.05 0.50 111.50 117.55 A A A C5 C6 N1 DG DG DG 1 1 1 N 1 8.65 0.90 116.20 124.85 A A A N1 C2 N2 DG DG DG 1 1 1 N 1 -13.72 0.70 119.90 106.18 A A A N3 C2 N2 DG DG DG 1 1 1 N 1 -4.55 0.60 128.60 124.05 A A A C5 C6 O6 DG DG DG 1 1 1 N 1 -5.94 0.40 104.50 98.56 A A A O4' C4' C3' DC DC DC 2 2 2 N 1 -5.03 0.70 102.20 97.17 A A A C4' C3' C2' DC DC DC 2 2 2 N 1 5.17 0.50 119.90 125.07 A A A C2 N3 C4 DC DC DC 2 2 2 N 1 -5.65 0.40 121.90 116.25 A A A N3 C4 C5 DC DC DC 2 2 2 N 1 6.62 0.60 118.90 125.52 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 4.50 0.70 120.20 124.70 A A A C5 C4 N4 DC DC DC 2 2 2 N 1 -6.98 0.90 105.70 98.72 A A A O5' P OP1 DG DG DG 3 3 3 N 1 -3.03 0.40 104.50 101.47 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 9.68 1.10 109.80 119.48 A A A C5' C4' O4' DG DG DG 3 3 3 N 1 5.34 0.70 110.30 115.64 A A A C1' O4' C4' DG DG DG 3 3 3 N 1 8.27 0.30 108.30 116.57 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -5.39 0.60 125.10 119.71 A A A C6 N1 C2 DG DG DG 3 3 3 N 1 4.21 0.60 123.90 128.11 A A A N1 C2 N3 DG DG DG 3 3 3 N 1 6.39 0.50 111.50 117.89 A A A C5 C6 N1 DG DG DG 3 3 3 N 1 6.23 0.90 116.20 122.43 A A A N1 C2 N2 DG DG DG 3 3 3 N 1 -10.44 0.70 119.90 109.46 A A A N3 C2 N2 DG DG DG 3 3 3 N 1 -6.60 0.60 128.60 122.00 A A A C5 C6 O6 DG DG DG 3 3 3 N 1 -6.35 0.90 105.70 99.35 A A A O5' P OP2 DT DT DT 4 4 4 N 1 -17.66 1.60 120.90 103.24 A A A P O5' C5' DT DT DT 4 4 4 N 1 -7.64 0.70 108.00 100.36 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 5.17 0.60 119.00 124.17 A A A C4 C5 C7 DT DT DT 4 4 4 N 1 -5.61 0.60 122.90 117.29 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 -6.56 0.90 105.70 99.14 A A A O5' P OP1 A A A 5 5 5 N 1 14.82 1.90 111.70 126.52 A A A O5' C5' C4' A A A 5 5 5 N 1 -10.76 1.60 120.90 110.14 A A A P O5' C5' A A A 5 5 5 N 1 -7.83 1.10 112.00 104.17 A A A N9 C1' C2' A A A 5 5 5 N 1 10.52 1.20 119.70 130.22 A A A C3' O3' P DT DT DA 6 6 7 Y 1 -7.91 0.90 105.70 97.79 A A A O5' P OP1 DA DA DA 7 7 7 N 1 -9.86 1.60 120.90 111.04 A A A P O5' C5' DA DA DA 7 7 7 N 1 -3.36 0.40 104.50 101.14 A A A O4' C4' C3' DA DA DA 7 7 7 N 1 -4.84 0.70 102.20 97.36 A A A C4' C3' C2' DA DA DA 7 7 7 N 1 -4.81 0.80 102.40 97.59 A A A C3' C2' C1' DA DA DA 7 7 7 N 1 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 17.50 1.20 119.70 137.20 A A A C3' O3' P DA DA DC 7 7 8 Y 1 -6.92 0.90 105.70 98.78 A A A O5' P OP1 DC DC DC 8 8 8 N 1 -5.31 0.40 104.50 99.19 A A A O4' C4' C3' DC DC DC 8 8 8 N 1 3.85 0.30 108.30 112.15 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 5.17 0.50 119.90 125.07 A A A C2 N3 C4 DC DC DC 8 8 8 N 1 -4.99 0.40 121.90 116.91 A A A N3 C4 C5 DC DC DC 8 8 8 N 1 5.74 0.60 118.90 124.64 A A A N1 C2 O2 DC DC DC 8 8 8 N 1 6.16 0.70 120.20 126.36 A A A C5 C4 N4 DC DC DC 8 8 8 N 1 -6.55 0.90 105.70 99.15 A A A O5' P OP1 DG DG DG 9 9 9 N 1 -7.07 0.60 125.10 118.03 A A A C6 N1 C2 DG DG DG 9 9 9 N 1 6.39 0.60 123.90 130.29 A A A N1 C2 N3 DG DG DG 9 9 9 N 1 -3.29 0.50 111.90 108.61 A A A C2 N3 C4 DG DG DG 9 9 9 N 1 6.07 0.50 111.50 117.57 A A A C5 C6 N1 DG DG DG 9 9 9 N 1 -10.11 0.70 119.90 109.79 A A A N3 C2 N2 DG DG DG 9 9 9 N 1 -5.83 0.60 128.60 122.77 A A A C5 C6 O6 DG DG DG 9 9 9 N 1 -6.81 0.90 105.70 98.89 A A A O5' P OP1 DC DC DC 10 10 10 N 1 4.22 0.50 119.90 124.12 A A A C2 N3 C4 DC DC DC 10 10 10 N 1 -3.85 0.40 121.90 118.05 A A A N3 C4 C5 DC DC DC 10 10 10 N 1 6.52 0.60 118.90 125.42 A A A N1 C2 O2 DC DC DC 10 10 10 N 1 -5.65 0.60 125.10 119.45 B B B C6 N1 C2 DG DG DG 11 11 11 N 1 5.32 0.60 123.90 129.22 B B B N1 C2 N3 DG DG DG 11 11 11 N 1 5.76 0.50 111.50 117.26 B B B C5 C6 N1 DG DG DG 11 11 11 N 1 -10.06 0.70 119.90 109.84 B B B N3 C2 N2 DG DG DG 11 11 11 N 1 -5.06 0.60 128.60 123.54 B B B C5 C6 O6 DG DG DG 11 11 11 N 1 -5.83 0.90 105.70 99.87 B B B O5' P OP1 DC DC DC 12 12 12 N 1 3.15 0.30 108.30 111.45 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 4.23 0.50 119.90 124.13 B B B C2 N3 C4 DC DC DC 12 12 12 N 1 -5.36 0.40 121.90 116.54 B B B N3 C4 C5 DC DC DC 12 12 12 N 1 3.59 0.50 121.00 124.59 B B B C5 C6 N1 DC DC DC 12 12 12 N 1 4.35 0.60 118.90 123.25 B B B N1 C2 O2 DC DC DC 12 12 12 N 1 5.29 0.70 120.20 125.49 B B B C5 C4 N4 DC DC DC 12 12 12 N 1 -9.29 0.90 105.70 96.41 B B B O5' P OP1 DG DG DG 13 13 13 N 1 -13.09 1.60 120.90 107.81 B B B P O5' C5' DG DG DG 13 13 13 N 1 -6.87 0.40 104.50 97.63 B B B O4' C4' C3' DG DG DG 13 13 13 N 1 7.12 0.30 108.30 115.42 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 -4.80 0.60 125.10 120.30 B B B C6 N1 C2 DG DG DG 13 13 13 N 1 6.37 0.50 111.50 117.87 B B B C5 C6 N1 DG DG DG 13 13 13 N 1 9.33 0.90 116.20 125.53 B B B N1 C2 N2 DG DG DG 13 13 13 N 1 -12.74 0.70 119.90 107.16 B B B N3 C2 N2 DG DG DG 13 13 13 N 1 -6.33 0.60 128.60 122.27 B B B C5 C6 O6 DG DG DG 13 13 13 N 1 -13.00 1.20 119.70 106.70 B B B C3' O3' P DG DG DT 13 13 14 Y 1 -5.60 0.90 105.70 100.10 B B B O5' P OP1 DT DT DT 14 14 14 N 1 -15.31 1.60 120.90 105.59 B B B P O5' C5' DT DT DT 14 14 14 N 1 -6.00 0.80 102.40 96.40 B B B C3' C2' C1' DT DT DT 14 14 14 N 1 2.85 0.30 108.30 111.15 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 -4.83 0.60 122.30 117.47 B B B N3 C2 O2 DT DT DT 14 14 14 N 1 -3.73 0.60 119.90 116.17 B B B N3 C4 O4 DT DT DT 14 14 14 N 1 -6.41 0.90 105.70 99.29 B B B O5' P OP1 A A A 15 15 15 N 1 -14.00 1.60 120.90 106.90 B B B P O5' C5' A A A 15 15 15 N 1 -7.93 1.10 112.00 104.07 B B B N9 C1' C2' A A A 15 15 15 N 1 8.22 0.70 108.50 116.72 B B B O4' C1' N9 A A A 15 15 15 N 1 -10.28 0.90 105.70 95.42 B B B O5' P OP1 DT DT DT 16 16 16 N 1 3.84 0.60 119.00 122.84 B B B C4 C5 C7 DT DT DT 16 16 16 N 1 -4.84 0.60 122.90 118.06 B B B C6 C5 C7 DT DT DT 16 16 16 N 1 -7.31 0.90 105.70 98.39 B B B O5' P OP2 DA DA DA 17 17 17 N 1 -10.57 1.60 120.90 110.33 B B B P O5' C5' DA DA DA 17 17 17 N 1 -7.74 0.80 109.40 101.66 B B B O5' C5' C4' DC DC DC 18 18 18 N 1 -4.71 0.70 102.20 97.49 B B B C4' C3' C2' DC DC DC 18 18 18 N 1 4.34 0.50 119.90 124.24 B B B C2 N3 C4 DC DC DC 18 18 18 N 1 -4.45 0.40 121.90 117.45 B B B N3 C4 C5 DC DC DC 18 18 18 N 1 3.27 0.50 121.00 124.27 B B B C5 C6 N1 DC DC DC 18 18 18 N 1 5.45 0.60 118.90 124.35 B B B N1 C2 O2 DC DC DC 18 18 18 N 1 5.32 0.70 120.20 125.52 B B B C5 C4 N4 DC DC DC 18 18 18 N 1 -6.95 0.90 105.70 98.75 B B B O5' P OP2 DG DG DG 19 19 19 N 1 6.14 0.30 108.30 114.44 B B B O4' C1' N9 DG DG DG 19 19 19 N 1 -4.69 0.60 125.10 120.41 B B B C6 N1 C2 DG DG DG 19 19 19 N 1 6.01 0.50 111.50 117.51 B B B C5 C6 N1 DG DG DG 19 19 19 N 1 5.66 0.90 116.20 121.86 B B B N1 C2 N2 DG DG DG 19 19 19 N 1 -9.19 0.70 119.90 110.71 B B B N3 C2 N2 DG DG DG 19 19 19 N 1 -4.90 0.60 128.60 123.70 B B B C5 C6 O6 DG DG DG 19 19 19 N 1 -6.92 0.90 105.70 98.78 B B B O5' P OP2 DC DC DC 20 20 20 N 1 -2.48 0.40 104.50 102.02 B B B O4' C4' C3' DC DC DC 20 20 20 N 1 5.61 0.50 119.90 125.51 B B B C2 N3 C4 DC DC DC 20 20 20 N 1 -5.30 0.40 121.90 116.60 B B B N3 C4 C5 DC DC DC 20 20 20 N 1 4.00 0.60 118.90 122.90 B B B N1 C2 O2 DC DC DC 20 20 20 N 1 4.28 0.70 120.20 124.48 B B B C5 C4 N4 DC DC DC 20 20 20 N 1 A A C6 N1 DG DG 1 1 -0.047 0.007 1.391 1.344 N 1 A A C2 N2 DG DG 1 1 -0.111 0.010 1.341 1.230 N 1 A A O3' C3' DC DC 2 2 -0.044 0.006 1.419 1.375 N 1 A A C4' C3' DG DG 3 3 0.074 0.010 1.529 1.603 N 1 A A C2' C1' DG DG 3 3 0.063 0.010 1.519 1.582 N 1 A A O3' C3' DG DG 3 3 -0.040 0.006 1.419 1.379 N 1 A A C6 N1 DG DG 3 3 -0.046 0.007 1.391 1.345 N 1 A A C8 N9 DG DG 3 3 -0.054 0.007 1.374 1.320 N 1 A A C2 N2 DG DG 3 3 -0.115 0.010 1.341 1.226 N 1 A A P O5' DT DT 4 4 0.069 0.010 1.593 1.662 N 1 A A C5' C4' A A 5 5 -0.050 0.007 1.508 1.458 N 1 A A O3' C3' DT DT 6 6 -0.062 0.006 1.419 1.357 N 1 A A C4' C3' DA DA 7 7 0.068 0.010 1.529 1.597 N 1 A A O3' C3' DA DA 7 7 -0.078 0.006 1.419 1.341 N 1 A A C2' C1' DC DC 8 8 0.073 0.010 1.519 1.592 N 1 A A O3' C3' DC DC 8 8 -0.043 0.006 1.419 1.376 N 1 A A C6 N1 DG DG 9 9 -0.049 0.007 1.391 1.342 N 1 A A C2 N2 DG DG 9 9 -0.111 0.010 1.341 1.230 N 1 A A N3 C4 DC DC 10 10 0.049 0.007 1.335 1.384 N 1 B B C2' C1' DG DG 11 11 0.075 0.010 1.519 1.594 N 1 B B C6 N1 DG DG 11 11 -0.059 0.007 1.391 1.332 N 1 B B C2 N2 DG DG 11 11 -0.107 0.010 1.341 1.234 N 1 B B N3 C4 DC DC 12 12 0.042 0.007 1.335 1.377 N 1 B B O3' C3' DG DG 13 13 -0.045 0.006 1.419 1.374 N 1 B B C6 N1 DG DG 13 13 -0.051 0.007 1.391 1.340 N 1 B B C2 N2 DG DG 13 13 -0.105 0.010 1.341 1.236 N 1 B B P O5' A A 15 15 0.067 0.010 1.593 1.660 N 1 B B O3' C3' DT DT 16 16 -0.038 0.006 1.419 1.381 N 1 B B C2' C1' DC DC 18 18 0.070 0.010 1.519 1.589 N 1 B B N3 C4 DC DC 18 18 0.057 0.007 1.335 1.392 N 1 B B C6 N1 DG DG 19 19 -0.056 0.007 1.391 1.335 N 1 B B C8 N9 DG DG 19 19 -0.050 0.007 1.374 1.324 N 1 B B C2 N2 DG DG 19 19 -0.104 0.010 1.341 1.237 N 1 A A O O HOH HOH 38 113 1.64 1_555 2_454 1 A A O O HOH HOH 41 85 2.01 1_555 2_454 1 A B O3' N2 DC DG 10 19 2.13 1_555 3_555 1 B B N2 O2 DG DC 11 18 2.15 1_555 3_555 0.1950000 2.000 2285 1 2.000 TR isotropic TR isotropic 2.000 94 500 0 406 0 0.020 0.010 0.140 fix fix 2.000 1D88 2285 2.000 1 refinement PROLSQ (MODIFIED BY G.J.QUIGLEY) refinement MODIFIED BY G.J.QUIGLEY CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B A 15 B N1 A 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B A 15 B N6 A 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 DNA-RNA HYBRID A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID 1D88 PDB 1 1D88 1 10 1D88 1 10 1D88 A 1 1 10 11 20 1D88 11 20 1D88 B 1 1 10 19 P 21 21 21