1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Okuda, M.
Watanabe, Y.
Okamura, H.
Hanaoka, F.
Ohkuma, Y.
Nishimura, Y.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
19
1346
1356
10.1093/emboj/19.6.1346
10716934
Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
2000
10.2210/pdb1d8k/pdb
pdb_00001d8k
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9287.704
GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
CENTRAL CORE DOMAIN
1
man
polymer
no
no
ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV
R
ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV
R
A
trt001000206.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PET3A
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-04-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
Y
RCSB
Y
RCSB
1999-10-25
REL
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY.
LEAST RESTRAINT VIOLATIONS
100
1
2D NOESY
3D_13C-SEPARATED_NOESY
3D_15N-SEPARATED_NOESY
4D_13C-SEPARATED_NOESY
HNHA
HMQC-J
500mM NACL
6.0
AMBIENT
300
K
THE STRUCTURES ARE BASED ON A TOTAL OF 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 38 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.
4D SIMULATED ANNEALING
1
minimized average structure
1-2MM PROTEIN U-15N,13C; 20MM PHOSPHATE BUFFER, 500MM NACL
1-2MM PROTEIN U-15N; 20MM PHOSPHATE BUFFER, 500MM NACL
1-2MM PROTEIN ; 20MM PHOSPHATE BUFFER, 500MM NACL
DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX
processing
NMRPipe
1.6
GARRETT, POWERS, GRONENBORN, CLORE
data analysis
PIPP, CAPP, STAPP
3.9
NAKAI, KIDERA, NAKAMURA
structure solution
EMBOSS
5
NAKAI, KIDERA, NAKAMURA
refinement
EMBOSS
5
600
Bruker
DMX
500
Bruker
AMX
ALA
1
n
1
ALA
1
A
LEU
2
n
2
LEU
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
TYR
8
n
8
TYR
8
A
LYS
9
n
9
LYS
9
A
PHE
10
n
10
PHE
10
A
GLY
11
n
11
GLY
11
A
VAL
12
n
12
VAL
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LYS
15
n
15
LYS
15
A
ILE
16
n
16
ILE
16
A
VAL
17
n
17
VAL
17
A
ASN
18
n
18
ASN
18
A
TYR
19
n
19
TYR
19
A
MET
20
n
20
MET
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
ARG
23
n
23
ARG
23
A
HIS
24
n
24
HIS
24
A
GLN
25
n
25
GLN
25
A
ARG
26
n
26
ARG
26
A
GLY
27
n
27
GLY
27
A
ASP
28
n
28
ASP
28
A
THR
29
n
29
THR
29
A
HIS
30
n
30
HIS
30
A
PRO
31
n
31
PRO
31
A
LEU
32
n
32
LEU
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
LEU
38
n
38
LEU
38
A
ASP
39
n
39
ASP
39
A
GLU
40
n
40
GLU
40
A
THR
41
n
41
THR
41
A
GLN
42
n
42
GLN
42
A
HIS
43
n
43
HIS
43
A
LEU
44
n
44
LEU
44
A
ASP
45
n
45
ASP
45
A
ILE
46
n
46
ILE
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
LYS
49
n
49
LYS
49
A
GLN
50
n
50
GLN
50
A
LYS
51
n
51
LYS
51
A
GLN
52
n
52
GLN
52
A
TRP
53
n
53
TRP
53
A
LEU
54
n
54
LEU
54
A
MET
55
n
55
MET
55
A
THR
56
n
56
THR
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
LEU
59
n
59
LEU
59
A
VAL
60
n
60
VAL
60
A
ASN
61
n
61
ASN
61
A
ASN
62
n
62
ASN
62
A
PRO
63
n
63
PRO
63
A
LYS
64
n
64
LYS
64
A
ILE
65
n
65
ILE
65
A
GLU
66
n
66
GLU
66
A
VAL
67
n
67
VAL
67
A
ILE
68
n
68
ILE
68
A
ASP
69
n
69
ASP
69
A
GLY
70
n
70
GLY
70
A
LYS
71
n
71
LYS
71
A
TYR
72
n
72
TYR
72
A
ALA
73
n
73
ALA
73
A
PHE
74
n
74
PHE
74
A
LYS
75
n
75
LYS
75
A
PRO
76
n
76
PRO
76
A
LYS
77
n
77
LYS
77
A
TYR
78
n
78
TYR
78
A
ASN
79
n
79
ASN
79
A
VAL
80
n
80
VAL
80
A
ARG
81
n
81
ARG
81
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LYS
9
-177.59
-55.72
1
A
ILE
46
45.97
-71.50
1
A
GLU
57
-112.21
-73.33
1
A
LEU
59
-77.94
31.25
1
A
VAL
60
-133.26
-37.21
1
A
TYR
78
-153.77
12.07
1
A
ASN
79
81.01
139.23
minimized average
SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
1
N
N
A
PHE
10
A
PHE
10
HELX_P
A
GLN
25
A
GLN
25
1
1
16
A
LEU
34
A
LEU
34
HELX_P
A
GLU
40
A
GLU
40
1
2
7
A
LEU
48
A
LEU
48
HELX_P
A
MET
55
A
MET
55
1
3
8
GENE REGULATION
WINGED HELIX-TURN-HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, GENE REGULATION
T2EB_HUMAN
UNP
1
P29084
66
146
1D8K
1
81
P29084
A
1
1
81
3
A
LEU
32
A
LEU
32
A
LEU
32
A
LEU
32
A
ILE
65
A
ILE
65
A
ILE
68
A
ILE
68
A
LYS
71
A
LYS
71
A
PHE
74
A
PHE
74
1
P 1