1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Okuda, M. Watanabe, Y. Okamura, H. Hanaoka, F. Ohkuma, Y. Nishimura, Y. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK EMBO J. EMJODG 0897 0261-4189 19 1346 1356 10.1093/emboj/19.6.1346 10716934 Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface. 2000 10.2210/pdb1d8k/pdb pdb_00001d8k 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9287.704 GENERAL TRANSCRIPTION FACTOR TFIIE-BETA CENTRAL CORE DOMAIN 1 man polymer no no ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV R ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV R A trt001000206.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PET3A RIKEN Structural Genomics/Proteomics Initiative RSGI database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-04-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Y RCSB Y RCSB 1999-10-25 REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. LEAST RESTRAINT VIOLATIONS 100 1 2D NOESY 3D_13C-SEPARATED_NOESY 3D_15N-SEPARATED_NOESY 4D_13C-SEPARATED_NOESY HNHA HMQC-J 500mM NACL 6.0 AMBIENT 300 K THE STRUCTURES ARE BASED ON A TOTAL OF 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 38 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. 4D SIMULATED ANNEALING 1 minimized average structure 1-2MM PROTEIN U-15N,13C; 20MM PHOSPHATE BUFFER, 500MM NACL 1-2MM PROTEIN U-15N; 20MM PHOSPHATE BUFFER, 500MM NACL 1-2MM PROTEIN ; 20MM PHOSPHATE BUFFER, 500MM NACL DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX processing NMRPipe 1.6 GARRETT, POWERS, GRONENBORN, CLORE data analysis PIPP, CAPP, STAPP 3.9 NAKAI, KIDERA, NAKAMURA structure solution EMBOSS 5 NAKAI, KIDERA, NAKAMURA refinement EMBOSS 5 600 Bruker DMX 500 Bruker AMX ALA 1 n 1 ALA 1 A LEU 2 n 2 LEU 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A TYR 8 n 8 TYR 8 A LYS 9 n 9 LYS 9 A PHE 10 n 10 PHE 10 A GLY 11 n 11 GLY 11 A VAL 12 n 12 VAL 12 A LEU 13 n 13 LEU 13 A ALA 14 n 14 ALA 14 A LYS 15 n 15 LYS 15 A ILE 16 n 16 ILE 16 A VAL 17 n 17 VAL 17 A ASN 18 n 18 ASN 18 A TYR 19 n 19 TYR 19 A MET 20 n 20 MET 20 A LYS 21 n 21 LYS 21 A THR 22 n 22 THR 22 A ARG 23 n 23 ARG 23 A HIS 24 n 24 HIS 24 A GLN 25 n 25 GLN 25 A ARG 26 n 26 ARG 26 A GLY 27 n 27 GLY 27 A ASP 28 n 28 ASP 28 A THR 29 n 29 THR 29 A HIS 30 n 30 HIS 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A THR 33 n 33 THR 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A GLU 36 n 36 GLU 36 A ILE 37 n 37 ILE 37 A LEU 38 n 38 LEU 38 A ASP 39 n 39 ASP 39 A GLU 40 n 40 GLU 40 A THR 41 n 41 THR 41 A GLN 42 n 42 GLN 42 A HIS 43 n 43 HIS 43 A LEU 44 n 44 LEU 44 A ASP 45 n 45 ASP 45 A ILE 46 n 46 ILE 46 A GLY 47 n 47 GLY 47 A LEU 48 n 48 LEU 48 A LYS 49 n 49 LYS 49 A GLN 50 n 50 GLN 50 A LYS 51 n 51 LYS 51 A GLN 52 n 52 GLN 52 A TRP 53 n 53 TRP 53 A LEU 54 n 54 LEU 54 A MET 55 n 55 MET 55 A THR 56 n 56 THR 56 A GLU 57 n 57 GLU 57 A ALA 58 n 58 ALA 58 A LEU 59 n 59 LEU 59 A VAL 60 n 60 VAL 60 A ASN 61 n 61 ASN 61 A ASN 62 n 62 ASN 62 A PRO 63 n 63 PRO 63 A LYS 64 n 64 LYS 64 A ILE 65 n 65 ILE 65 A GLU 66 n 66 GLU 66 A VAL 67 n 67 VAL 67 A ILE 68 n 68 ILE 68 A ASP 69 n 69 ASP 69 A GLY 70 n 70 GLY 70 A LYS 71 n 71 LYS 71 A TYR 72 n 72 TYR 72 A ALA 73 n 73 ALA 73 A PHE 74 n 74 PHE 74 A LYS 75 n 75 LYS 75 A PRO 76 n 76 PRO 76 A LYS 77 n 77 LYS 77 A TYR 78 n 78 TYR 78 A ASN 79 n 79 ASN 79 A VAL 80 n 80 VAL 80 A ARG 81 n 81 ARG 81 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A LYS 9 -177.59 -55.72 1 A ILE 46 45.97 -71.50 1 A GLU 57 -112.21 -73.33 1 A LEU 59 -77.94 31.25 1 A VAL 60 -133.26 -37.21 1 A TYR 78 -153.77 12.07 1 A ASN 79 81.01 139.23 minimized average SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA 1 N N A PHE 10 A PHE 10 HELX_P A GLN 25 A GLN 25 1 1 16 A LEU 34 A LEU 34 HELX_P A GLU 40 A GLU 40 1 2 7 A LEU 48 A LEU 48 HELX_P A MET 55 A MET 55 1 3 8 GENE REGULATION WINGED HELIX-TURN-HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, GENE REGULATION T2EB_HUMAN UNP 1 P29084 66 146 1D8K 1 81 P29084 A 1 1 81 3 A LEU 32 A LEU 32 A LEU 32 A LEU 32 A ILE 65 A ILE 65 A ILE 68 A ILE 68 A LYS 71 A LYS 71 A PHE 74 A PHE 74 1 P 1