0.015928 0.000000 0.004084 0.000000 0.028023 0.000000 0.000000 0.000000 0.045951 0.00000 0.00000 0.00000 Gao, Y.-G. Robinson, H. Sanishvili, R. Joachimiak, A. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 104.38 90.00 62.784 35.685 22.466 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Co H18 N6 3 161.116 COBALT HEXAMMINE(III) non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MG N 148 N CO N 149 N N N 150 N N N 151 N N N 152 N N N 153 N N N 154 N N N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing US Biochemistry BICHAW 0033 0006-2960 38 16452 16460 10.1021/bi9914614 10600106 Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution. 1999 10.2210/pdb1d8x/pdb pdb_00001d8x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123 1 IMAGE PLATE 1998-02-06 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 3094.042 5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*GP*G)-3' 2 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 161.116 COBALT HEXAMMINE(III) 1 syn non-polymer 18.015 water 138 nat water no no (DC)(DC)(DG)(DA)(DA)(DT)(DG)(DA)(DG)(DG) CCGAATGAGG A,B polydeoxyribonucleotide n n n n n n n n n n 1 1.83 33.0 VAPOR DIFFUSION 7.5 MPD, COBALT HEXAMMINE, MGCL2, TRIS, pH 7.5, VAPOR DIFFUSION, temperature 298K 298 COBALT HEXAMMINE 1 MGCL2 1 TRIS 1 MPD 1 MPD 2 0.294 1 19 A 1 B 20 -1.714 A_DC1:DG20_B 1 -6.065 0.103 0.112 -0.053 5.782 1 19 A 2 B 19 -0.015 A_DC2:DG19_B 2 9.555 0.321 -0.122 -0.075 34.320 9 11 A 3 B 18 4.702 A_DG3:DA18_B 3 3.911 6.536 0.568 -4.340 -42.679 9 11 A 4 B 17 4.643 A_DA4:DG17_B 4 -9.392 -6.601 0.961 -4.171 -14.987 1 20 A 5 B 16 2.750 A_DA5:DT16_B 5 14.930 0.129 0.025 -0.135 12.912 1 20 A 6 B 15 0.804 A_DT6:DA15_B 6 9.833 0.049 0.117 -0.074 38.614 9 11 A 7 B 14 6.814 A_DG7:DA14_B 7 -5.772 6.502 1.044 -4.223 -31.656 9 11 A 8 B 13 6.447 A_DA8:DG13_B 8 -1.622 -6.516 0.839 -4.370 -5.507 1 19 A 9 B 12 -0.993 A_DG9:DC12_B 9 7.126 -0.218 -0.271 -0.112 4.248 1 19 A 10 B 11 -0.577 A_DG10:DC11_B 10 -9.274 -0.086 0.262 -0.010 3.488 38.327 A A 1 2 18.923 B B 20 19 3.383 12.132 1.176 0.332 AA_DC1DC2:DG19DG20_BB 1 8.109 -12.648 35.537 -1.156 -0.680 3.079 56.884 A A 2 3 5.282 B B 19 18 2.992 5.025 0.730 1.439 AA_DC2DG3:DA18DG19_BB 2 -1.551 1.630 56.661 1.252 -0.846 3.305 -3.502 A A 3 4 29.138 B B 18 17 5.254 -1.623 0.075 -1.320 AA_DG3DA4:DG17DA18_BB 3 -1.716 -30.810 -2.586 58.923 -38.230 3.179 67.133 A A 4 5 2.133 B B 17 16 3.141 2.358 -0.436 1.209 AA_DA4DA5:DT16DG17_BB 4 -0.373 0.338 67.096 1.005 0.380 2.735 20.292 A A 5 6 16.203 B B 16 15 3.001 5.635 0.056 -0.544 AA_DA5DT6:DA15DT16_BB 5 -0.300 0.862 19.499 -3.826 -0.280 3.190 61.538 A A 6 7 6.829 B B 15 14 3.101 6.974 0.790 0.859 AA_DT6DG7:DA14DA15_BB 6 1.616 -1.582 61.161 0.524 -0.699 3.082 -4.219 A A 7 8 33.637 B B 14 13 5.114 -2.298 0.026 -1.716 AA_DG7DA8:DG13DA14_BB 7 1.229 17.986 -3.319 57.228 18.487 3.064 58.057 A A 8 9 7.118 B B 13 12 3.014 6.883 -0.873 1.551 AA_DA8DG9:DC12DG13_BB 8 6.210 -6.422 57.376 1.257 1.208 3.705 34.978 A A 9 10 8.137 B B 12 11 3.346 4.840 -1.262 1.499 AA_DG9DG10:DC11DC12_BB 9 -7.490 12.591 33.857 1.694 0.861 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 1999-11-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS RCSB Y RCSB 1999-10-26 REL REL MG MAGNESIUM ION NCO COBALT HEXAMMINE(III) HOH water MO5 22 2 MG MG 22 A MO5 23 2 MG MG 23 A NCO 21 3 NCO NCO 21 A HOH 100 4 HOH HOH 100 A HOH 101 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 105 4 HOH HOH 105 A HOH 107 4 HOH HOH 107 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 114 4 HOH HOH 114 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 126 4 HOH HOH 126 A HOH 131 4 HOH HOH 131 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 137 4 HOH HOH 137 A HOH 140 4 HOH HOH 140 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 148 4 HOH HOH 148 A HOH 152 4 HOH HOH 152 A HOH 155 4 HOH HOH 155 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 165 4 HOH HOH 165 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 170 4 HOH HOH 170 A HOH 171 4 HOH HOH 171 A HOH 172 4 HOH HOH 172 A HOH 173 4 HOH HOH 173 A HOH 174 4 HOH HOH 174 A HOH 175 4 HOH HOH 175 A HOH 176 4 HOH HOH 176 A HOH 178 4 HOH HOH 178 A HOH 183 4 HOH HOH 183 A HOH 184 4 HOH HOH 184 A HOH 185 4 HOH HOH 185 A HOH 188 4 HOH HOH 188 A HOH 190 4 HOH HOH 190 A HOH 191 4 HOH HOH 191 A HOH 192 4 HOH HOH 192 A HOH 193 4 HOH HOH 193 A HOH 195 4 HOH HOH 195 A HOH 199 4 HOH HOH 199 A HOH 200 4 HOH HOH 200 A HOH 201 4 HOH HOH 201 A HOH 202 4 HOH HOH 202 A HOH 204 4 HOH HOH 204 A HOH 206 4 HOH HOH 206 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 210 4 HOH HOH 210 A HOH 211 4 HOH HOH 211 A HOH 213 4 HOH HOH 213 A HOH 214 4 HOH HOH 214 A HOH 215 4 HOH HOH 215 A HOH 217 4 HOH HOH 217 A HOH 221 4 HOH HOH 221 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A MO5 22 4 HOH HOH 228 A MO5 22 4 HOH HOH 229 A MO5 22 4 HOH HOH 230 A MO5 22 4 HOH HOH 231 A MO5 22 4 HOH HOH 232 A MO5 23 4 HOH HOH 233 A MO5 23 4 HOH HOH 234 A MO5 23 4 HOH HOH 235 A MO5 23 4 HOH HOH 236 A MO5 23 4 HOH HOH 237 A HOH 103 4 HOH HOH 103 B HOH 104 4 HOH HOH 104 B HOH 106 4 HOH HOH 106 B HOH 108 4 HOH HOH 108 B HOH 109 4 HOH HOH 109 B HOH 112 4 HOH HOH 112 B HOH 113 4 HOH HOH 113 B HOH 125 4 HOH HOH 125 B HOH 127 4 HOH HOH 127 B HOH 128 4 HOH HOH 128 B HOH 129 4 HOH HOH 129 B HOH 130 4 HOH HOH 130 B HOH 132 4 HOH HOH 132 B HOH 133 4 HOH HOH 133 B HOH 136 4 HOH HOH 136 B HOH 138 4 HOH HOH 138 B HOH 139 4 HOH HOH 139 B HOH 141 4 HOH HOH 141 B HOH 142 4 HOH HOH 142 B HOH 145 4 HOH HOH 145 B HOH 149 4 HOH HOH 149 B HOH 150 4 HOH HOH 150 B HOH 151 4 HOH HOH 151 B HOH 153 4 HOH HOH 153 B HOH 154 4 HOH HOH 154 B HOH 159 4 HOH HOH 159 B HOH 163 4 HOH HOH 163 B HOH 164 4 HOH HOH 164 B HOH 166 4 HOH HOH 166 B HOH 169 4 HOH HOH 169 B HOH 177 4 HOH HOH 177 B HOH 179 4 HOH HOH 179 B HOH 180 4 HOH HOH 180 B HOH 181 4 HOH HOH 181 B HOH 182 4 HOH HOH 182 B HOH 186 4 HOH HOH 186 B HOH 187 4 HOH HOH 187 B HOH 189 4 HOH HOH 189 B HOH 194 4 HOH HOH 194 B HOH 196 4 HOH HOH 196 B HOH 197 4 HOH HOH 197 B HOH 198 4 HOH HOH 198 B HOH 203 4 HOH HOH 203 B HOH 205 4 HOH HOH 205 B HOH 207 4 HOH HOH 207 B HOH 212 4 HOH HOH 212 B HOH 216 4 HOH HOH 216 B HOH 218 4 HOH HOH 218 B HOH 219 4 HOH HOH 219 B HOH 220 4 HOH HOH 220 B HOH 222 4 HOH HOH 222 B HOH 223 4 HOH HOH 223 B HOH 226 4 HOH HOH 226 B HOH 227 4 HOH HOH 227 B C 1 n 1 DC 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A G 7 n 7 DG 7 A A 8 n 8 DA 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B A 14 n 4 DA 14 B A 15 n 5 DA 15 B T 16 n 6 DT 16 B G 17 n 7 DG 17 B A 18 n 8 DA 18 B G 19 n 9 DG 19 B G 20 n 10 DG 20 B 0.1820000 0.1820000 0.2380000 566 5 11236 author_defined_assembly 2 dimeric A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 A HOH 228 F O HOH 1_555 86.3 A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 A HOH 229 F O HOH 1_555 95.1 A HOH 228 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 229 F O HOH 1_555 178.0 A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 A HOH 230 F O HOH 1_555 88.8 A HOH 228 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 230 F O HOH 1_555 89.9 A HOH 229 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 230 F O HOH 1_555 88.7 A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 A HOH 231 F O HOH 1_555 173.0 A HOH 228 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 231 F O HOH 1_555 88.7 A HOH 229 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 231 F O HOH 1_555 89.8 A HOH 230 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 231 F O HOH 1_555 86.3 A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 95.6 A HOH 228 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 91.5 A HOH 229 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 89.8 A HOH 230 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 175.5 A HOH 231 F O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 89.4 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 A HOH 233 F O HOH 1_555 87.6 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 A HOH 234 F O HOH 1_555 89.6 A HOH 233 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 234 F O HOH 1_555 173.2 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 A HOH 235 F O HOH 1_555 89.9 A HOH 233 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 235 F O HOH 1_555 95.6 A HOH 234 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 235 F O HOH 1_555 90.6 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 A HOH 236 F O HOH 1_555 175.6 A HOH 233 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 236 F O HOH 1_555 93.4 A HOH 234 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 236 F O HOH 1_555 89.9 A HOH 235 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 236 F O HOH 1_555 85.8 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 97.8 A HOH 233 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 85.1 A HOH 234 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 89.2 A HOH 235 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 172.4 A HOH 236 F O HOH 1_555 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 86.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 100 F HOH 1 A HOH 101 F HOH 1 A HOH 211 F HOH 1 B HOH 219 G HOH 1 A DA 5 0.081 SIDE CHAIN 1 B DC 11 0.078 SIDE CHAIN 1 B DA 14 0.077 SIDE CHAIN 1 -2.47 0.40 120.30 117.83 A A A C6 N1 C2 DC DC DC 1 1 1 N 1 -4.40 0.40 121.90 117.50 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 -4.15 0.60 130.40 126.25 A A A C6 C5 N7 DG DG DG 3 3 3 N 1 -2.81 0.40 105.80 102.99 A A A C8 N9 C4 DA DA DA 4 4 4 N 1 2.89 0.40 105.80 108.69 A A A N9 C4 C5 DA DA DA 4 4 4 N 1 -3.17 0.40 104.50 101.33 A A A O4' C4' C3' DA DA DA 5 5 5 N 1 -4.39 0.60 118.60 114.21 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 -6.04 0.90 105.70 99.66 A A A O5' P OP2 DG DG DG 7 7 7 N 1 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 -3.72 0.60 125.10 121.38 A A A C6 N1 C2 DG DG DG 7 7 7 N 1 4.23 0.60 123.90 128.13 A A A N1 C2 N3 DG DG DG 7 7 7 N 1 3.66 0.40 121.90 125.56 B B B N3 C4 C5 DC DC DC 11 11 11 N 1 -3.07 0.50 117.40 114.33 B B B C4 C5 C6 DC DC DC 11 11 11 N 1 -9.45 1.20 119.70 110.25 B B B C3' O3' P DC DC DC 11 11 12 Y 1 2.49 0.30 108.30 110.79 B B B O4' C1' N9 DA DA DA 14 14 14 N 1 -3.27 0.40 104.50 101.23 B B B O4' C4' C3' DA DA DA 15 15 15 N 0.2460000 0.1880000 0.1880000 1.20 20.0 4386 633 12550 5330 5 81.7 RANDOM 1 A POSTERIORI 0.0 MOLECULAR REPLACEMENT G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN SHELXL SWAT OPTION 0 1.20 20.0 128 559 19 412 0 0.010 0.029 0.073 0.007 0.004 0.044 31.9 1.20 20.0 1D8X 12550 12550 0.0 0.0 0.0450000 1 16.5 1.6 81.7 0.3900000 1.20 1.24 3.7 1.25 46.8 model building X-PLOR refinement SHELXL-97 data scaling d*TREK V. 5.1 phasing X-PLOR CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N metalc 1.969 A DA 5 A OP2 DA 5 1_555 A MG 22 C MG MG 1_555 metalc 2.080 A DG 9 A OP1 DG 9 1_555 A MG 23 D MG MG 1_555 metalc 2.066 A MG 22 C MG MG 1_555 A HOH 228 F O HOH 1_555 metalc 2.042 A MG 22 C MG MG 1_555 A HOH 229 F O HOH 1_555 metalc 2.072 A MG 22 C MG MG 1_555 A HOH 230 F O HOH 1_555 metalc 2.073 A MG 22 C MG MG 1_555 A HOH 231 F O HOH 1_555 metalc 2.054 A MG 22 C MG MG 1_555 A HOH 232 F O HOH 1_555 metalc 2.031 A MG 23 D MG MG 1_555 A HOH 233 F O HOH 1_555 metalc 2.061 A MG 23 D MG MG 1_555 A HOH 234 F O HOH 1_555 metalc 2.039 A MG 23 D MG MG 1_555 A HOH 235 F O HOH 1_555 metalc 2.087 A MG 23 D MG MG 1_555 A HOH 236 F O HOH 1_555 metalc 2.077 A MG 23 D MG MG 1_555 A HOH 237 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog TYPE_11_PAIR A DG 3 A N2 DG 3 1_555 B DA 18 B N7 DA 8 1_555 hydrog TYPE_11_PAIR A DG 3 A N3 DG 3 1_555 B DA 18 B N6 DA 8 1_555 hydrog TYPE_11_PAIR A DA 4 A N6 DA 4 1_555 B DG 17 B N3 DG 7 1_555 hydrog TYPE_11_PAIR A DA 4 A N7 DA 4 1_555 B DG 17 B N2 DG 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog TYPE_11_PAIR A DG 7 A N2 DG 7 1_555 B DA 14 B N7 DA 4 1_555 hydrog TYPE_11_PAIR A DG 7 A N3 DG 7 1_555 B DA 14 B N6 DA 4 1_555 hydrog TYPE_11_PAIR A DA 8 A N6 DA 8 1_555 B DG 13 B N3 DG 3 1_555 hydrog TYPE_11_PAIR A DA 8 A N7 DA 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 11 B N4 DC 1 1_555 DNA TANDEM GA BASE PAIRS, GA MISMATCH, DNA 1D8X PDB 1 1D8X 1 10 1D8X 1 10 1D8X A 1 1 10 11 20 1D8X 11 20 1D8X B 1 1 10 BINDING SITE FOR RESIDUE MG A 22 A MG 22 Software 6 BINDING SITE FOR RESIDUE MG A 23 A MG 23 Software 6 BINDING SITE FOR RESIDUE NCO A 21 A NCO 21 Software 9 A DA 5 A DA 5 6 1_555 A HOH 228 F HOH 6 1_555 A HOH 229 F HOH 6 1_555 A HOH 230 F HOH 6 1_555 A HOH 231 F HOH 6 1_555 A HOH 232 F HOH 6 1_555 A DG 9 A DG 9 6 1_555 A HOH 233 F HOH 6 1_555 A HOH 234 F HOH 6 1_555 A HOH 235 F HOH 6 1_555 A HOH 236 F HOH 6 1_555 A HOH 237 F HOH 6 1_555 A DG 3 A DG 3 9 1_556 A DT 6 A DT 6 9 1_555 A DG 7 A DG 7 9 1_555 A HOH 167 F HOH 9 1_555 A HOH 170 F HOH 9 1_555 A HOH 209 F HOH 9 1_555 B DG 13 B DG 3 9 1_555 B DG 17 B DG 7 9 1_556 B HOH 125 G HOH 9 1_556 5 monoclinic C 1 2 1