1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Inoue, M.
Muto, Y.
Sakamoto, H.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
1743
1750
10.1093/nar/28.8.1743
10734193
NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C.
2000
10.2210/pdb1d8z/pdb
pdb_00001d8z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9847.118
HU ANTIGEN C
FIRST RNA-BINDING DOMAIN (RBD1)
1
man
polymer
no
no
MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY
ARPSSASIR
MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY
ARPSSASIR
A
trt001000201.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PK7
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-04-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
SECOND RNA-BINDING DOMAIN (RBD1) OF HUC
Y
RCSB
Y
RCSB
1999-10-26
REL
REL
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR AND 15N-SEPARATED
HETERONUCLEAR TECHNIQUES.
1
2D NOESY
3D_15N-SEPARATED_NOESY
20 mM
3.6
AMBIENT
298
K
DISTANCE GEOMETRY AND SIMULATED ANNEALING
2MM PROTEIN; 20 MM POTASSIUM OXALATE BUFFER; 90% H2O; 10% D2O
2MM PROTEIN U-15N; 20 MM POTASSIUM OXALATE BUFFER; 90% H2O; 10% D2O
BRUNGER
structure solution
X-PLOR
3.1
BRUNGER
refinement
X-PLOR
3.1
500
Bruker
DMX
MET
0
n
1
MET
0
A
ASP
1
n
2
ASP
1
A
SER
2
n
3
SER
2
A
LYS
3
n
4
LYS
3
A
THR
4
n
5
THR
4
A
ASN
5
n
6
ASN
5
A
LEU
6
n
7
LEU
6
A
ILE
7
n
8
ILE
7
A
VAL
8
n
9
VAL
8
A
ASN
9
n
10
ASN
9
A
TYR
10
n
11
TYR
10
A
LEU
11
n
12
LEU
11
A
PRO
12
n
13
PRO
12
A
GLN
13
n
14
GLN
13
A
ASN
14
n
15
ASN
14
A
MET
15
n
16
MET
15
A
THR
16
n
17
THR
16
A
GLN
17
n
18
GLN
17
A
ASP
18
n
19
ASP
18
A
GLU
19
n
20
GLU
19
A
PHE
20
n
21
PHE
20
A
LYS
21
n
22
LYS
21
A
SER
22
n
23
SER
22
A
LEU
23
n
24
LEU
23
A
PHE
24
n
25
PHE
24
A
GLY
25
n
26
GLY
25
A
SER
26
n
27
SER
26
A
ILE
27
n
28
ILE
27
A
GLY
28
n
29
GLY
28
A
ASP
29
n
30
ASP
29
A
ILE
30
n
31
ILE
30
A
GLU
31
n
32
GLU
31
A
SER
32
n
33
SER
32
A
CYS
33
n
34
CYS
33
A
LYS
34
n
35
LYS
34
A
LEU
35
n
36
LEU
35
A
VAL
36
n
37
VAL
36
A
ARG
37
n
38
ARG
37
A
ASP
38
n
39
ASP
38
A
LYS
39
n
40
LYS
39
A
ILE
40
n
41
ILE
40
A
THR
41
n
42
THR
41
A
GLY
42
n
43
GLY
42
A
GLN
43
n
44
GLN
43
A
SER
44
n
45
SER
44
A
LEU
45
n
46
LEU
45
A
GLY
46
n
47
GLY
46
A
TYR
47
n
48
TYR
47
A
GLY
48
n
49
GLY
48
A
PHE
49
n
50
PHE
49
A
VAL
50
n
51
VAL
50
A
ASN
51
n
52
ASN
51
A
TYR
52
n
53
TYR
52
A
SER
53
n
54
SER
53
A
ASP
54
n
55
ASP
54
A
PRO
55
n
56
PRO
55
A
ASN
56
n
57
ASN
56
A
ASP
57
n
58
ASP
57
A
ALA
58
n
59
ALA
58
A
ASP
59
n
60
ASP
59
A
LYS
60
n
61
LYS
60
A
ALA
61
n
62
ALA
61
A
ILE
62
n
63
ILE
62
A
ASN
63
n
64
ASN
63
A
THR
64
n
65
THR
64
A
LEU
65
n
66
LEU
65
A
ASN
66
n
67
ASN
66
A
GLY
67
n
68
GLY
67
A
LEU
68
n
69
LEU
68
A
LYS
69
n
70
LYS
69
A
LEU
70
n
71
LEU
70
A
GLN
71
n
72
GLN
71
A
THR
72
n
73
THR
72
A
LYS
73
n
74
LYS
73
A
THR
74
n
75
THR
74
A
ILE
75
n
76
ILE
75
A
LYS
76
n
77
LYS
76
A
VAL
77
n
78
VAL
77
A
SER
78
n
79
SER
78
A
TYR
79
n
80
TYR
79
A
ALA
80
n
81
ALA
80
A
ARG
81
n
82
ARG
81
A
PRO
82
n
83
PRO
82
A
SER
83
n
84
SER
83
A
SER
84
n
85
SER
84
A
ALA
85
n
86
ALA
85
A
SER
86
n
87
SER
86
A
ILE
87
n
88
ILE
87
A
ARG
88
n
89
ARG
88
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
34
A
N
LYS
35
A
O
PHE
49
A
O
PHE
50
A
O
VAL
50
A
O
VAL
51
A
N
LEU
6
A
N
LEU
7
A
O
ASN
9
A
O
ASN
10
A
N
LYS
76
A
N
LYS
77
A
N
ILE
75
A
N
ILE
76
A
O
LEU
68
A
O
LEU
69
1
A
ARG
37
0.316
SIDE CHAIN
1
A
ARG
81
0.305
SIDE CHAIN
1
A
ARG
88
0.317
SIDE CHAIN
1
A
SER
2
-159.07
-48.80
1
A
LYS
3
61.75
89.79
1
A
THR
4
-118.40
71.48
1
A
THR
16
-157.89
-154.79
1
A
SER
26
-90.02
42.64
1
A
ILE
27
-141.20
-39.08
1
A
ILE
30
-55.11
90.49
1
A
GLU
31
-37.11
-29.66
1
A
SER
32
-172.65
115.70
1
A
LYS
34
-175.41
71.36
1
A
ASP
38
-43.71
161.83
1
A
ILE
40
-111.72
-91.65
1
A
TYR
47
-179.09
143.56
1
A
THR
64
-133.29
-31.58
1
A
THR
72
-154.56
21.42
1
A
SER
83
-48.70
161.05
1
A
ALA
85
67.58
62.82
1
A
ILE
87
-142.90
-62.70
SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN (RBD1) OF HU ANTIGEN C (HUC)
1
N
N
A
THR
16
A
THR
17
HELX_P
A
SER
26
A
SER
27
1
1
11
A
ASP
54
A
ASP
55
HELX_P
A
ASN
66
A
ASN
67
1
2
13
RNA BINDING PROTEIN
RNA-BINDING DOMAIN, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, RNA BINDING PROTEIN
ELAV3_MOUSE
UNP
1
Q60900
36
123
1D8Z
1
88
Q60900
A
1
2
89
1
ASP
conflict
MET
0
1D8Z
A
Q60900
UNP
35
1
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
32
A
SER
33
A
LEU
35
A
LEU
36
A
TYR
47
A
TYR
48
A
ASN
51
A
ASN
52
A
LEU
6
A
LEU
7
A
ASN
9
A
ASN
10
A
THR
74
A
THR
75
A
SER
78
A
SER
79
A
LEU
68
A
LEU
69
A
LYS
69
A
LYS
70
1
P 1