0.022366 0.012913 0.000000 0.000000 0.025826 0.000000 0.000000 0.000000 0.023585 0.00000 0.00000 0.00000 Kneale, G. Brown, T. Kennard, O. Rabinovich, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 44.710 44.710 42.400 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C N 84 N N N 85 N C N 86 N O N 87 N N N 88 N C N 89 N O N 90 N C N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N H N 110 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 186 805 814 10.1016/0022-2836(85)90398-5 4093986 G . T base-pairs in a DNA helix: the crystal structure of d(G-G-G-G-T-C-C-C). 1985 10.2210/pdb1d91/pdb pdb_00001d91 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 275.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 2443.604 DNA (5'-D(*GP*GP*GP*GP*TP*CP*CP*C)-3') 2 syn polymer 18.015 water 104 nat water no no (DG)(DG)(DG)(DG)(DT)(DC)(DC)(DC) GGGGTCCC A,B polydeoxyribonucleotide n n n n n n n n 2.50 50.86 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 MGCL2 1 NA CACODYLATE 1 WATER 2 -3.885 1 19 A 1 B 16 -4.125 A_DG1:DC16_B 1 -4.828 -0.447 0.049 -0.195 -9.162 1 19 A 2 B 15 -1.042 A_DG2:DC15_B 2 -9.307 -0.318 -0.098 -0.224 -12.341 1 19 A 3 B 14 -3.586 A_DG3:DC14_B 3 -8.557 -0.527 -0.259 -0.297 -5.521 28 A 4 B 13 -7.672 A_DG4:DT13_B 4 -7.099 -2.227 -0.016 -0.611 5.981 28 A 5 B 12 -8.708 A_DT5:DG12_B 5 -16.144 2.541 -0.072 -0.514 11.786 1 19 A 6 B 11 0.837 A_DC6:DG11_B 6 -17.251 0.107 -0.112 -0.065 11.305 1 19 A 7 B 10 -1.355 A_DC7:DG10_B 7 -15.529 0.552 -0.105 -0.156 14.841 1 19 A 8 B 9 -4.560 A_DC8:DG9_B 8 -7.843 0.274 -0.265 -0.178 3.218 33.731 A A 1 2 7.596 B B 16 15 3.494 4.395 0.233 -2.002 AA_DG1DG2:DC15DC16_BB 1 1.233 -2.132 33.430 -4.186 -0.195 2.900 32.389 A A 2 3 12.855 B B 15 14 3.374 7.110 -0.214 -1.750 AA_DG2DG3:DC14DC15_BB 2 2.217 -4.008 31.544 -4.357 0.764 2.216 25.391 A A 3 4 19.573 B B 14 13 3.060 8.387 -0.129 -1.964 AA_DG3DG4:DT13DC14_BB 3 -5.068 11.828 23.453 -6.499 -0.933 3.139 50.283 A A 4 5 1.790 B B 13 12 3.167 1.520 -0.269 -1.009 AA_DG4DT5:DG12DT13_BB 4 -0.407 0.479 50.259 -1.293 0.288 1.840 23.453 A A 5 6 26.656 B B 12 11 2.977 10.451 0.192 -1.900 AA_DT5DC6:DG11DG12_BB 5 1.921 -4.900 20.938 -7.432 0.034 3.071 34.727 A A 6 7 11.544 B B 11 10 3.365 6.848 0.134 -1.220 AA_DC6DC7:DG10DG11_BB 6 0.505 -0.852 34.062 -3.085 -0.148 2.915 31.029 A A 7 8 12.006 B B 10 9 3.323 6.379 -0.244 -1.711 AA_DC7DC8:DG9DG10_BB 7 -0.455 0.857 30.379 -4.381 0.372 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-10-17 REL HOH water HOH 19 2 HOH HOH 19 A HOH 21 2 HOH HOH 21 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 29 2 HOH HOH 29 A HOH 31 2 HOH HOH 31 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 56 2 HOH HOH 56 A HOH 58 2 HOH HOH 58 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 66 2 HOH HOH 66 A HOH 70 2 HOH HOH 70 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 79 2 HOH HOH 79 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 85 2 HOH HOH 85 A HOH 86 2 HOH HOH 86 A HOH 87 2 HOH HOH 87 A HOH 88 2 HOH HOH 88 A HOH 89 2 HOH HOH 89 A HOH 90 2 HOH HOH 90 A HOH 97 2 HOH HOH 97 A HOH 99 2 HOH HOH 99 A HOH 101 2 HOH HOH 101 A HOH 105 2 HOH HOH 105 A HOH 106 2 HOH HOH 106 A HOH 108 2 HOH HOH 108 A HOH 109 2 HOH HOH 109 A HOH 111 2 HOH HOH 111 A HOH 113 2 HOH HOH 113 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 120 2 HOH HOH 120 A HOH 17 2 HOH HOH 17 B HOH 18 2 HOH HOH 18 B HOH 20 2 HOH HOH 20 B HOH 22 2 HOH HOH 22 B HOH 25 2 HOH HOH 25 B HOH 26 2 HOH HOH 26 B HOH 27 2 HOH HOH 27 B HOH 28 2 HOH HOH 28 B HOH 30 2 HOH HOH 30 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 37 2 HOH HOH 37 B HOH 38 2 HOH HOH 38 B HOH 43 2 HOH HOH 43 B HOH 46 2 HOH HOH 46 B HOH 47 2 HOH HOH 47 B HOH 53 2 HOH HOH 53 B HOH 54 2 HOH HOH 54 B HOH 55 2 HOH HOH 55 B HOH 57 2 HOH HOH 57 B HOH 59 2 HOH HOH 59 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 64 2 HOH HOH 64 B HOH 65 2 HOH HOH 65 B HOH 67 2 HOH HOH 67 B HOH 68 2 HOH HOH 68 B HOH 69 2 HOH HOH 69 B HOH 71 2 HOH HOH 71 B HOH 72 2 HOH HOH 72 B HOH 77 2 HOH HOH 77 B HOH 78 2 HOH HOH 78 B HOH 80 2 HOH HOH 80 B HOH 81 2 HOH HOH 81 B HOH 82 2 HOH HOH 82 B HOH 91 2 HOH HOH 91 B HOH 92 2 HOH HOH 92 B HOH 93 2 HOH HOH 93 B HOH 94 2 HOH HOH 94 B HOH 95 2 HOH HOH 95 B HOH 96 2 HOH HOH 96 B HOH 98 2 HOH HOH 98 B HOH 100 2 HOH HOH 100 B HOH 102 2 HOH HOH 102 B HOH 103 2 HOH HOH 103 B HOH 104 2 HOH HOH 104 B HOH 107 2 HOH HOH 107 B HOH 110 2 HOH HOH 110 B HOH 112 2 HOH HOH 112 B HOH 114 2 HOH HOH 114 B HOH 117 2 HOH HOH 117 B HOH 118 2 HOH HOH 118 B HOH 119 2 HOH HOH 119 B G 1 n 1 DG 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 1 DG 9 B G 10 n 2 DG 10 B G 11 n 3 DG 11 B G 12 n 4 DG 12 B T 13 n 5 DT 13 B C 14 n 6 DC 14 B C 15 n 7 DC 15 B C 16 n 8 DC 16 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A OP2 O DG HOH 3 51 2.13 1 3.06 0.30 108.30 111.36 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 6.68 0.30 108.30 114.98 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.75 0.30 108.30 112.05 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -5.69 0.80 102.40 96.71 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 -5.39 0.80 102.40 97.01 A A A C3' C2' C1' DT DT DT 5 5 5 N 1 6.91 0.30 108.30 115.21 A A A O4' C1' N1 DT DT DT 5 5 5 N 1 8.36 0.30 108.30 116.66 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 7.08 0.30 108.30 115.38 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 6.75 0.30 108.30 115.05 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 3.33 0.30 108.30 111.63 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 2.26 0.30 108.30 110.56 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 3.72 0.30 108.30 112.02 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 7.01 0.30 108.30 115.31 B B B O4' C1' N1 DT DT DT 13 13 13 N 1 7.67 1.20 119.70 127.37 B B B C3' O3' P DT DT DC 13 13 14 Y 1 7.50 0.30 108.30 115.80 B B B O4' C1' N1 DC DC DC 14 14 14 N 1 7.59 0.30 108.30 115.89 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 9.59 0.30 108.30 117.89 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 A A N7 C8 DG DG 4 4 -0.037 0.006 1.305 1.268 N 1 B B O O HOH HOH 55 64 1.99 1_555 2_655 1 A B O O HOH HOH 70 22 2.13 1_555 5_564 1 B B O O HOH HOH 38 117 2.15 1_555 3_664 0.1450000 2.100 8.000 2486 1 2.000 TR isotropic TR isotropic 2.100 8.000 104 428 0 324 0 fix fix 2.100 1D91 2898 1 refinement NUCLSQ G.T BASE PAIRS IN A DNA HELIX. THE CRYSTAL STRUCTURE OF D(G-G-G-G-T-C-C-C) 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 15 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 15 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 15 B N4 DC 7 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 14 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 14 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 14 B N4 DC 6 1_555 hydrog TYPE_28_PAIR A DG 4 A N1 DG 4 1_555 B DT 13 B O2 DT 5 1_555 hydrog TYPE_28_PAIR A DG 4 A O6 DG 4 1_555 B DT 13 B N3 DT 5 1_555 hydrog TYPE_28_PAIR A DT 5 A N3 DT 5 1_555 B DG 12 B O6 DG 4 1_555 hydrog TYPE_28_PAIR A DT 5 A O2 DT 5 1_555 B DG 12 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 11 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 11 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 11 B N2 DG 3 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 10 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 10 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 10 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 DNA A-DNA, DOUBLE HELIX, MISMATCHED, DNA 1D91 PDB 1 1D91 1 8 1D91 1 8 1D91 A 1 1 8 9 16 1D91 9 16 1D91 B 1 1 8 169 P 61