0.022124
0.012773
0.000000
0.000000
0.025546
0.000000
0.000000
0.000000
0.023272
0.00000
0.00000
0.00000
Hunter, W.N.
Kneale, G.
Brown, T.
Rabinovich, D.
Kennard, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
45.200
45.200
42.970
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
N
84
N
N
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
H
N
110
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
190
605
618
10.1016/0022-2836(86)90246-9
3783714
Refined crystal structure of an octanucleotide duplex with G . T mismatched base-pairs.
1986
UK
Nature
NATUAS
0006
0028-0836
315
604
606
High-Resolution Structure of a DNA Helix Containing Mismatched Base Pairs
1985
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
3
205
226
Structural Studies of DNA Fragments. The G.T Wobble Base Pair in A, B and Z DNA. The G.A Base Pair in B-DNA
1985
10.2210/pdb1d92/pdb
pdb_00001d92
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
275.00
1
DIFFRACTOMETER
SYNTEX P21
x-ray
1
1.0
2443.604
DNA (5'-D(*GP*GP*GP*GP*CP*TP*CP*C)-3')
2
syn
polymer
18.015
water
52
nat
water
no
no
(DG)(DG)(DG)(DG)(DC)(DT)(DC)(DC)
GGGGCTCC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.59
52.56
VAPOR DIFFUSION
6.50
pH 6.50, VAPOR DIFFUSION, temperature 277.00K
277.00
WATER
1
NA CACODYLATE
1
MGCL2
1
WATER
2
-11.458
1
19
A
1
B
16
-3.331
A_DG1:DC16_B
1
1.987
-0.546
-0.206
-0.023
-12.300
1
19
A
2
B
15
1.506
A_DG2:DC15_B
2
-6.217
-0.158
-0.319
-0.083
-9.140
28
A
3
B
14
-5.224
A_DG3:DT14_B
3
-9.231
-2.581
-0.272
-0.727
-7.361
1
19
A
4
B
13
-3.252
A_DG4:DC13_B
4
-3.208
-0.124
-0.052
-0.186
-2.808
1
19
A
5
B
12
-4.488
A_DC5:DG12_B
5
-16.414
0.188
0.341
-0.200
0.949
1
28
A
6
B
11
1.972
A_DT6:DG11_B
6
-14.018
2.138
0.170
-0.508
15.218
1
19
A
7
B
10
-2.294
A_DC7:DG10_B
7
-13.015
0.656
-0.203
-0.354
15.515
1
19
A
8
B
9
-1.211
A_DC8:DG9_B
8
-7.443
0.501
-0.352
-0.325
2.186
34.127
A
A
1
2
23.871
B
B
16
15
3.268
13.636
0.448
-2.153
AA_DG1DG2:DC15DC16_BB
1
1.303
-2.281
31.333
-5.553
-0.583
2.967
20.447
A
A
2
3
8.079
B
B
15
14
3.312
2.854
0.109
-2.078
AA_DG2DG3:DT14DC15_BB
2
-1.986
5.622
20.152
-7.086
-1.162
3.252
42.987
A
A
3
4
4.908
B
B
14
13
3.314
3.581
-0.665
-1.402
AA_DG3DG4:DC13DT14_BB
3
-6.242
8.555
42.408
-2.272
0.283
3.132
31.052
A
A
4
5
9.920
B
B
13
12
3.322
5.271
-0.722
-1.257
AA_DG4DC5:DG12DC13_BB
4
-4.098
7.712
30.343
-3.359
0.564
3.226
43.702
A
A
5
6
1.399
B
B
12
11
3.217
1.040
0.743
-1.376
AA_DC5DT6:DG11DG12_BB
5
2.949
-3.965
43.595
-1.947
-0.720
2.008
23.214
A
A
6
7
17.602
B
B
11
10
2.774
6.918
-0.235
-1.770
AA_DT6DC7:DG10DG11_BB
6
5.145
-13.092
21.574
-6.211
1.933
2.920
33.507
A
A
7
8
14.990
B
B
10
9
3.420
8.550
0.145
-1.594
AA_DC7DC8:DG9DG10_BB
7
1.042
-1.828
32.411
-4.153
-0.083
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1993-07-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1992-10-17
REL
HOH
water
HOH
21
2
HOH
HOH
21
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
26
2
HOH
HOH
26
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
39
2
HOH
HOH
39
A
HOH
42
2
HOH
HOH
42
A
HOH
46
2
HOH
HOH
46
A
HOH
49
2
HOH
HOH
49
A
HOH
52
2
HOH
HOH
52
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
57
2
HOH
HOH
57
A
HOH
58
2
HOH
HOH
58
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
62
2
HOH
HOH
62
A
HOH
64
2
HOH
HOH
64
A
HOH
65
2
HOH
HOH
65
A
HOH
66
2
HOH
HOH
66
A
HOH
67
2
HOH
HOH
67
A
HOH
68
2
HOH
HOH
68
A
HOH
17
2
HOH
HOH
17
B
HOH
18
2
HOH
HOH
18
B
HOH
19
2
HOH
HOH
19
B
HOH
20
2
HOH
HOH
20
B
HOH
22
2
HOH
HOH
22
B
HOH
25
2
HOH
HOH
25
B
HOH
27
2
HOH
HOH
27
B
HOH
28
2
HOH
HOH
28
B
HOH
32
2
HOH
HOH
32
B
HOH
33
2
HOH
HOH
33
B
HOH
38
2
HOH
HOH
38
B
HOH
40
2
HOH
HOH
40
B
HOH
41
2
HOH
HOH
41
B
HOH
43
2
HOH
HOH
43
B
HOH
44
2
HOH
HOH
44
B
HOH
45
2
HOH
HOH
45
B
HOH
47
2
HOH
HOH
47
B
HOH
48
2
HOH
HOH
48
B
HOH
50
2
HOH
HOH
50
B
HOH
51
2
HOH
HOH
51
B
HOH
53
2
HOH
HOH
53
B
HOH
56
2
HOH
HOH
56
B
HOH
61
2
HOH
HOH
61
B
HOH
63
2
HOH
HOH
63
B
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
T
6
n
6
DT
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
1
DG
9
B
G
10
n
2
DG
10
B
G
11
n
3
DG
11
B
G
12
n
4
DG
12
B
C
13
n
5
DC
13
B
T
14
n
6
DT
14
B
C
15
n
7
DC
15
B
C
16
n
8
DC
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
-4.37
0.70
119.90
115.53
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
1
4.10
0.60
119.90
124.00
A
A
A
N1
C6
O6
DG
DG
DG
1
1
1
N
1
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-6.35
0.80
102.40
96.05
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
1
5.98
0.60
119.90
125.88
A
A
A
N1
C6
O6
DG
DG
DG
3
3
3
N
1
-5.33
0.60
128.60
123.27
A
A
A
C5
C6
O6
DG
DG
DG
3
3
3
N
1
3.77
0.50
106.80
110.57
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
1
-4.56
0.70
119.90
115.34
A
A
A
N3
C2
N2
DG
DG
DG
4
4
4
N
1
7.14
0.30
108.30
115.44
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-13.92
1.50
119.60
105.68
A
A
A
OP1
P
OP2
DT
DT
DT
6
6
6
N
1
4.86
0.30
108.30
113.16
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
7.15
0.30
108.30
115.45
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
6.66
0.30
108.30
114.96
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-6.48
0.70
102.20
95.72
B
B
B
C4'
C3'
C2'
DG
DG
DG
9
9
9
N
1
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-6.68
0.80
109.40
102.72
B
B
B
O5'
C5'
C4'
DG
DG
DG
11
11
11
N
1
-4.37
0.70
102.20
97.83
B
B
B
C4'
C3'
C2'
DG
DG
DG
11
11
11
N
1
3.58
0.30
108.30
111.88
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
8.54
1.20
119.70
128.24
B
B
B
C3'
O3'
P
DG
DG
DG
11
11
12
Y
1
3.12
0.30
108.30
111.42
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
4.94
0.30
108.30
113.24
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
5.24
0.30
108.30
113.54
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
5.23
0.80
123.10
128.33
B
B
B
N1
C2
O2
DT
DT
DT
14
14
14
N
1
-6.83
0.60
122.30
115.47
B
B
B
N3
C2
O2
DT
DT
DT
14
14
14
N
1
-6.62
0.80
102.40
95.78
B
B
B
C3'
C2'
C1'
DC
DC
DC
15
15
15
N
1
6.75
0.30
108.30
115.05
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
9.37
1.20
119.70
129.07
B
B
B
C3'
O3'
P
DC
DC
DC
15
15
16
Y
1
5.18
0.30
108.30
113.48
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
A
A
C5'
C4'
DG
DG
3
3
-0.070
0.011
1.509
1.439
N
1
A
A
N1
C2
DC
DC
8
8
0.069
0.010
1.397
1.466
N
1
B
B
N7
C8
DG
DG
12
12
-0.044
0.006
1.305
1.261
N
1
B
B
O4'
C1'
DT
DT
14
14
0.069
0.011
1.420
1.489
N
1
B
B
O3'
C3'
DC
DC
15
15
-0.062
0.006
1.419
1.357
N
0.1360000
2.250
10.000
1924
1
2.000
TR
isotropic
TR
isotropic
2.250
10.000
52
376
0
324
0
fix
fix
2.250
1D92
2414
1
refinement
NUCLSQ
REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH G.T MISMATCHED BASE-PAIRS
1
N
N
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
16
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
16
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
16
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
15
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
15
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
15
B
N4
DC
7
1_555
hydrog
TYPE_28_PAIR
A
DG
3
A
N1
DG
3
1_555
B
DT
14
B
O2
DT
6
1_555
hydrog
TYPE_28_PAIR
A
DG
3
A
O6
DG
3
1_555
B
DT
14
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
13
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
13
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
13
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
12
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
12
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
12
B
N2
DG
4
1_555
hydrog
TYPE_28_PAIR
A
DT
6
A
N3
DT
6
1_555
B
DG
11
B
O6
DG
3
1_555
hydrog
TYPE_28_PAIR
A
DT
6
A
O2
DT
6
1_555
B
DG
11
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
10
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
10
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
10
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
9
B
N2
DG
1
1_555
DNA
A-DNA, DOUBLE HELIX, MISMATCHED, DNA
1D92
PDB
1
1D92
1
8
1D92
1
8
1D92
A
1
1
8
9
16
1D92
9
16
1D92
B
1
1
8
169
P 61