0.022124 0.012773 0.000000 0.000000 0.025546 0.000000 0.000000 0.000000 0.023272 0.00000 0.00000 0.00000 Hunter, W.N. Kneale, G. Brown, T. Rabinovich, D. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 45.200 45.200 42.970 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C N 84 N N N 85 N C N 86 N O N 87 N N N 88 N C N 89 N O N 90 N C N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N H N 110 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 190 605 618 10.1016/0022-2836(86)90246-9 3783714 Refined crystal structure of an octanucleotide duplex with G . T mismatched base-pairs. 1986 UK Nature NATUAS 0006 0028-0836 315 604 606 High-Resolution Structure of a DNA Helix Containing Mismatched Base Pairs 1985 US J.Biomol.Struct.Dyn. JBSDD6 0646 0739-1102 3 205 226 Structural Studies of DNA Fragments. The G.T Wobble Base Pair in A, B and Z DNA. The G.A Base Pair in B-DNA 1985 10.2210/pdb1d92/pdb pdb_00001d92 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 275.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 2443.604 DNA (5'-D(*GP*GP*GP*GP*CP*TP*CP*C)-3') 2 syn polymer 18.015 water 52 nat water no no (DG)(DG)(DG)(DG)(DC)(DT)(DC)(DC) GGGGCTCC A,B polydeoxyribonucleotide n n n n n n n n 2.59 52.56 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 NA CACODYLATE 1 MGCL2 1 WATER 2 -11.458 1 19 A 1 B 16 -3.331 A_DG1:DC16_B 1 1.987 -0.546 -0.206 -0.023 -12.300 1 19 A 2 B 15 1.506 A_DG2:DC15_B 2 -6.217 -0.158 -0.319 -0.083 -9.140 28 A 3 B 14 -5.224 A_DG3:DT14_B 3 -9.231 -2.581 -0.272 -0.727 -7.361 1 19 A 4 B 13 -3.252 A_DG4:DC13_B 4 -3.208 -0.124 -0.052 -0.186 -2.808 1 19 A 5 B 12 -4.488 A_DC5:DG12_B 5 -16.414 0.188 0.341 -0.200 0.949 1 28 A 6 B 11 1.972 A_DT6:DG11_B 6 -14.018 2.138 0.170 -0.508 15.218 1 19 A 7 B 10 -2.294 A_DC7:DG10_B 7 -13.015 0.656 -0.203 -0.354 15.515 1 19 A 8 B 9 -1.211 A_DC8:DG9_B 8 -7.443 0.501 -0.352 -0.325 2.186 34.127 A A 1 2 23.871 B B 16 15 3.268 13.636 0.448 -2.153 AA_DG1DG2:DC15DC16_BB 1 1.303 -2.281 31.333 -5.553 -0.583 2.967 20.447 A A 2 3 8.079 B B 15 14 3.312 2.854 0.109 -2.078 AA_DG2DG3:DT14DC15_BB 2 -1.986 5.622 20.152 -7.086 -1.162 3.252 42.987 A A 3 4 4.908 B B 14 13 3.314 3.581 -0.665 -1.402 AA_DG3DG4:DC13DT14_BB 3 -6.242 8.555 42.408 -2.272 0.283 3.132 31.052 A A 4 5 9.920 B B 13 12 3.322 5.271 -0.722 -1.257 AA_DG4DC5:DG12DC13_BB 4 -4.098 7.712 30.343 -3.359 0.564 3.226 43.702 A A 5 6 1.399 B B 12 11 3.217 1.040 0.743 -1.376 AA_DC5DT6:DG11DG12_BB 5 2.949 -3.965 43.595 -1.947 -0.720 2.008 23.214 A A 6 7 17.602 B B 11 10 2.774 6.918 -0.235 -1.770 AA_DT6DC7:DG10DG11_BB 6 5.145 -13.092 21.574 -6.211 1.933 2.920 33.507 A A 7 8 14.990 B B 10 9 3.420 8.550 0.145 -1.594 AA_DC7DC8:DG9DG10_BB 7 1.042 -1.828 32.411 -4.153 -0.083 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-10-17 REL HOH water HOH 21 2 HOH HOH 21 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 26 2 HOH HOH 26 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 39 2 HOH HOH 39 A HOH 42 2 HOH HOH 42 A HOH 46 2 HOH HOH 46 A HOH 49 2 HOH HOH 49 A HOH 52 2 HOH HOH 52 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 60 2 HOH HOH 60 A HOH 62 2 HOH HOH 62 A HOH 64 2 HOH HOH 64 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 17 2 HOH HOH 17 B HOH 18 2 HOH HOH 18 B HOH 19 2 HOH HOH 19 B HOH 20 2 HOH HOH 20 B HOH 22 2 HOH HOH 22 B HOH 25 2 HOH HOH 25 B HOH 27 2 HOH HOH 27 B HOH 28 2 HOH HOH 28 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 38 2 HOH HOH 38 B HOH 40 2 HOH HOH 40 B HOH 41 2 HOH HOH 41 B HOH 43 2 HOH HOH 43 B HOH 44 2 HOH HOH 44 B HOH 45 2 HOH HOH 45 B HOH 47 2 HOH HOH 47 B HOH 48 2 HOH HOH 48 B HOH 50 2 HOH HOH 50 B HOH 51 2 HOH HOH 51 B HOH 53 2 HOH HOH 53 B HOH 56 2 HOH HOH 56 B HOH 61 2 HOH HOH 61 B HOH 63 2 HOH HOH 63 B G 1 n 1 DG 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A T 6 n 6 DT 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 1 DG 9 B G 10 n 2 DG 10 B G 11 n 3 DG 11 B G 12 n 4 DG 12 B C 13 n 5 DC 13 B T 14 n 6 DT 14 B C 15 n 7 DC 15 B C 16 n 8 DC 16 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 3.04 0.30 108.30 111.34 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 -4.37 0.70 119.90 115.53 A A A N3 C2 N2 DG DG DG 1 1 1 N 1 4.10 0.60 119.90 124.00 A A A N1 C6 O6 DG DG DG 1 1 1 N 1 2.95 0.30 108.30 111.25 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -6.35 0.80 102.40 96.05 A A A C3' C2' C1' DG DG DG 3 3 3 N 1 5.98 0.60 119.90 125.88 A A A N1 C6 O6 DG DG DG 3 3 3 N 1 -5.33 0.60 128.60 123.27 A A A C5 C6 O6 DG DG DG 3 3 3 N 1 3.77 0.50 106.80 110.57 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 -4.56 0.70 119.90 115.34 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 7.14 0.30 108.30 115.44 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 -13.92 1.50 119.60 105.68 A A A OP1 P OP2 DT DT DT 6 6 6 N 1 4.86 0.30 108.30 113.16 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 7.15 0.30 108.30 115.45 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 6.66 0.30 108.30 114.96 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 -6.48 0.70 102.20 95.72 B B B C4' C3' C2' DG DG DG 9 9 9 N 1 3.43 0.30 108.30 111.73 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 2.24 0.30 108.30 110.54 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 -6.68 0.80 109.40 102.72 B B B O5' C5' C4' DG DG DG 11 11 11 N 1 -4.37 0.70 102.20 97.83 B B B C4' C3' C2' DG DG DG 11 11 11 N 1 3.58 0.30 108.30 111.88 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 8.54 1.20 119.70 128.24 B B B C3' O3' P DG DG DG 11 11 12 Y 1 3.12 0.30 108.30 111.42 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 4.94 0.30 108.30 113.24 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 5.24 0.30 108.30 113.54 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 5.23 0.80 123.10 128.33 B B B N1 C2 O2 DT DT DT 14 14 14 N 1 -6.83 0.60 122.30 115.47 B B B N3 C2 O2 DT DT DT 14 14 14 N 1 -6.62 0.80 102.40 95.78 B B B C3' C2' C1' DC DC DC 15 15 15 N 1 6.75 0.30 108.30 115.05 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 9.37 1.20 119.70 129.07 B B B C3' O3' P DC DC DC 15 15 16 Y 1 5.18 0.30 108.30 113.48 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 A A C5' C4' DG DG 3 3 -0.070 0.011 1.509 1.439 N 1 A A N1 C2 DC DC 8 8 0.069 0.010 1.397 1.466 N 1 B B N7 C8 DG DG 12 12 -0.044 0.006 1.305 1.261 N 1 B B O4' C1' DT DT 14 14 0.069 0.011 1.420 1.489 N 1 B B O3' C3' DC DC 15 15 -0.062 0.006 1.419 1.357 N 0.1360000 2.250 10.000 1924 1 2.000 TR isotropic TR isotropic 2.250 10.000 52 376 0 324 0 fix fix 2.250 1D92 2414 1 refinement NUCLSQ REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH G.T MISMATCHED BASE-PAIRS 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 15 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 15 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 15 B N4 DC 7 1_555 hydrog TYPE_28_PAIR A DG 3 A N1 DG 3 1_555 B DT 14 B O2 DT 6 1_555 hydrog TYPE_28_PAIR A DG 3 A O6 DG 3 1_555 B DT 14 B N3 DT 6 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 13 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 13 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 13 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 12 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 12 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 12 B N2 DG 4 1_555 hydrog TYPE_28_PAIR A DT 6 A N3 DT 6 1_555 B DG 11 B O6 DG 3 1_555 hydrog TYPE_28_PAIR A DT 6 A O2 DT 6 1_555 B DG 11 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 10 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 10 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 10 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 DNA A-DNA, DOUBLE HELIX, MISMATCHED, DNA 1D92 PDB 1 1D92 1 8 1D92 1 8 1D92 A 1 1 8 9 16 1D92 9 16 1D92 B 1 1 8 169 P 61