0.023518 0.000000 0.000000 0.000000 0.023518 0.000000 0.000000 0.000000 0.041102 0.00000 0.00000 0.00000 Hunter, W.N. Langlois D'Estaintot, B. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.520 42.520 24.330 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Biochemistry BICHAW 0033 0006-2960 28 2444 2451 10.1021/bi00432a015 2730875 Structural variation in d(CTCTAGAG). Implications for protein-DNA interactions. 1989 10.2210/pdb1d93/pdb pdb_00001d93 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 2426.617 DNA (5'-D(*CP*TP*CP*TP*AP*GP*AP*G)-3') 1 syn polymer 18.015 water 35 nat water no no (DC)(DT)(DC)(DT)(DA)(DG)(DA)(DG) CTCTAGAG A polydeoxyribonucleotide n n n n n n n n 2.27 45.72 VAPOR DIFFUSION, SITTING DROP 6.80 pH 6.80, VAPOR DIFFUSION, SITTING DROP, temperature 291.00K 291.00 WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 WATER 2 MPD 2 4.869 1 19 A 1 A 8 4.779 A_DC1:DG8_A 1 -7.998 -0.150 0.092 -0.096 7.336 1 20 A 2 A 7 8.634 A_DT2:DA7_A 2 -10.922 -0.327 -0.234 0.134 6.912 1 19 A 3 A 6 6.576 A_DC3:DG6_A 3 -4.480 0.391 -0.049 -0.139 -0.725 1 20 A 4 A 5 2.541 A_DT4:DA5_A 4 -11.926 0.499 0.173 -0.172 0.725 1 20 A 5 A 4 2.541 A_DA5:DT4_A 5 -11.926 -0.499 0.173 -0.172 -6.912 1 19 A 6 A 3 6.576 A_DG6:DC3_A 6 -4.480 -0.391 -0.049 -0.139 -7.336 1 20 A 7 A 2 8.634 A_DA7:DT2_A 7 -10.922 0.327 -0.234 0.134 -4.869 1 19 A 8 A 1 4.779 A_DG8:DC1_A 8 -7.998 0.150 0.092 -0.096 2.880 32.682 A A 1 2 16.147 A A 8 7 3.295 8.961 0.623 -1.269 AA_DC1DT2:DA7DG8_AA 1 3.194 -5.756 31.302 -3.753 -0.573 2.905 37.281 A A 2 3 13.642 A A 7 6 3.311 8.643 0.006 -1.412 AA_DT2DC3:DG6DA7_AA 2 -1.968 3.106 36.248 -3.313 -0.260 3.230 41.096 A A 3 4 9.043 A A 6 5 3.472 6.324 -0.457 -1.290 AA_DC3DT4:DA5DG6_AA 3 1.195 -1.709 40.610 -2.545 0.785 2.843 15.503 A A 4 5 14.613 A A 5 4 3.364 3.900 0.000 -1.656 AA_DT4DA5:DT4DA5_AA 4 0.000 0.000 15.007 -9.064 0.000 3.230 41.096 A A 5 6 9.043 A A 4 3 3.472 6.324 0.457 -1.290 AA_DA5DG6:DC3DT4_AA 5 -1.195 1.709 40.610 -2.545 -0.785 2.905 37.281 A A 6 7 13.642 A A 3 2 3.311 8.643 -0.006 -1.412 AA_DG6DA7:DT2DC3_AA 6 1.968 -3.106 36.248 -3.313 0.260 2.880 32.682 A A 7 8 16.147 A A 2 1 3.295 8.962 -0.623 -1.269 AA_DA7DG8:DC1DT2_AA 7 -3.194 5.755 31.302 -3.753 0.573 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-10-17 REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A C 1 n 1 DC 1 A T 2 n 2 DT 2 A C 3 n 3 DC 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A G 6 n 6 DG 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 -9.06 0.80 109.40 100.34 A A A O5' C5' C4' DC DC DC 1 1 1 N 1 -3.97 0.40 104.50 100.53 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 10.65 1.20 115.70 126.35 A A A C5' C4' C3' DC DC DC 1 1 1 N 1 -9.13 1.00 110.10 100.97 A A A C1' O4' C4' DC DC DC 1 1 1 N 1 -8.31 0.70 102.20 93.89 A A A C4' C3' C2' DC DC DC 1 1 1 N 1 -3.19 0.40 121.90 118.71 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 4.25 0.50 117.40 121.65 A A A C4 C5 C6 DC DC DC 1 1 1 N 1 5.70 0.70 120.20 125.90 A A A C5 C4 N4 DC DC DC 1 1 1 N 1 19.09 1.20 119.70 138.79 A A A C3' O3' P DC DC DT 1 1 2 Y 1 -7.68 0.90 105.70 98.02 A A A O5' P OP2 DT DT DT 2 2 2 N 1 -8.95 0.80 109.40 100.45 A A A O5' C5' C4' DT DT DT 2 2 2 N 1 -10.12 1.60 120.90 110.78 A A A P O5' C5' DT DT DT 2 2 2 N 1 -8.71 0.40 104.50 95.79 A A A O4' C4' C3' DT DT DT 2 2 2 N 1 1.95 0.30 108.30 110.25 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -5.34 0.80 123.10 117.76 A A A N1 C2 O2 DT DT DT 2 2 2 N 1 -14.23 2.20 105.20 90.97 A A A O3' P OP1 DT DC DC 2 3 3 Y 1 -5.66 0.90 105.70 100.04 A A A O5' P OP1 DC DC DC 3 3 3 N 1 15.09 1.20 110.70 125.79 A A A O5' P OP2 DC DC DC 3 3 3 N 1 -5.35 0.80 102.40 97.05 A A A C3' C2' C1' DC DC DC 3 3 3 N 1 3.94 0.30 108.30 112.24 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 19.94 1.90 104.00 123.94 A A A O3' P O5' DC DT DT 3 4 4 Y 1 -9.42 0.90 105.70 96.28 A A A O5' P OP1 DT DT DT 4 4 4 N 1 8.77 1.20 110.70 119.47 A A A O5' P OP2 DT DT DT 4 4 4 N 1 7.53 1.10 109.80 117.33 A A A C5' C4' O4' DT DT DT 4 4 4 N 1 -14.88 0.70 108.00 93.12 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 3.69 0.60 115.20 118.89 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 8.49 1.10 110.50 118.99 A A A O3' P OP1 DT DA DA 4 5 5 Y 1 -13.88 1.60 120.90 107.02 A A A P O5' C5' DA DA DA 5 5 5 N 1 -4.86 0.40 104.50 99.64 A A A O4' C4' C3' DA DA DA 5 5 5 N 1 10.05 1.20 115.70 125.75 A A A C5' C4' C3' DA DA DA 5 5 5 N 1 -11.78 0.70 108.00 96.22 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -4.18 0.50 129.30 125.12 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 -3.42 0.50 113.80 110.38 A A A N7 C8 N9 DA DA DA 5 5 5 N 1 -3.23 0.40 104.50 101.27 A A A O4' C4' C3' DG DG DG 6 6 6 N 1 -8.18 0.80 102.40 94.22 A A A C3' C2' C1' DG DG DG 6 6 6 N 1 -4.88 0.70 108.00 103.12 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -15.65 1.50 119.60 103.95 A A A OP1 P OP2 DA DA DA 7 7 7 N 1 8.40 1.20 110.70 119.10 A A A O5' P OP1 DA DA DA 7 7 7 N 1 -7.49 0.70 108.00 100.51 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 4.24 0.60 118.60 122.84 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -6.62 0.50 129.30 122.68 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 5.38 0.50 110.60 115.98 A A A C2 N3 C4 DA DA DA 7 7 7 N 1 4.94 0.60 118.60 123.54 A A A N1 C6 N6 DA DA DA 7 7 7 N 1 -7.47 1.20 119.70 112.23 A A A C3' O3' P DA DA DG 7 7 8 Y 1 -9.09 1.50 119.60 110.51 A A A OP1 P OP2 DG DG DG 8 8 8 N 1 15.74 1.20 110.70 126.44 A A A O5' P OP2 DG DG DG 8 8 8 N 1 -12.70 1.60 120.90 108.20 A A A P O5' C5' DG DG DG 8 8 8 N 1 10.09 1.10 109.80 119.89 A A A C5' C4' O4' DG DG DG 8 8 8 N 1 -4.60 0.60 125.10 120.50 A A A C6 N1 C2 DG DG DG 8 8 8 N 1 5.64 0.50 111.90 117.54 A A A C2 N3 C4 DG DG DG 8 8 8 N 1 -3.89 0.50 128.60 124.71 A A A N3 C4 C5 DG DG DG 8 8 8 N 1 4.02 0.50 111.50 115.52 A A A C5 C6 N1 DG DG DG 8 8 8 N 1 -3.85 0.60 119.90 116.05 A A A N1 C6 O6 DG DG DG 8 8 8 N 1 A A O3' C3' DC DC 1 1 -0.056 0.006 1.419 1.363 N 1 A A P O5' DT DT 2 2 0.116 0.010 1.593 1.709 N 1 A A O5' C5' DT DT 2 2 0.152 0.016 1.440 1.592 N 1 A A C5' C4' DT DT 2 2 0.061 0.007 1.512 1.573 N 1 A A C3' C2' DT DT 2 2 0.077 0.012 1.518 1.595 N 1 A A C2' C1' DT DT 2 2 -0.068 0.010 1.518 1.450 N 1 A A O3' C3' DT DT 2 2 -0.046 0.006 1.419 1.373 N 1 A A N3 C4 DT DT 2 2 -0.050 0.008 1.382 1.332 N 1 A A C4 O4 DT DT 2 2 0.059 0.009 1.228 1.287 N 1 A A O3' P DT DC 2 3 0.083 0.012 1.607 1.690 Y 1 A A P OP1 DC DC 3 3 0.122 0.017 1.485 1.607 N 1 A A P OP2 DC DC 3 3 -0.120 0.017 1.485 1.365 N 1 A A C2 O2 DC DC 3 3 -0.067 0.009 1.240 1.173 N 1 A A O4' C4' DT DT 4 4 -0.104 0.010 1.446 1.342 N 1 A A C4 O4 DT DT 4 4 0.061 0.009 1.228 1.289 N 1 A A O3' P DT DA 4 5 -0.118 0.012 1.607 1.489 Y 1 A A P OP2 DA DA 5 5 0.132 0.017 1.485 1.617 N 1 A A P O5' DA DA 5 5 0.127 0.010 1.593 1.720 N 1 A A O4' C1' DA DA 5 5 0.085 0.011 1.420 1.505 N 1 A A C5 N7 DA DA 5 5 0.051 0.006 1.388 1.439 N 1 A A C8 N9 DA DA 5 5 0.091 0.008 1.373 1.464 N 1 A A O4' C4' DG DG 6 6 -0.074 0.010 1.446 1.372 N 1 A A N1 C2 DG DG 6 6 -0.051 0.008 1.373 1.322 N 1 A A C2 N3 DG DG 6 6 -0.071 0.008 1.323 1.252 N 1 A A C8 N9 DG DG 6 6 -0.046 0.007 1.374 1.328 N 1 A A O3' P DG DA 6 7 -0.086 0.012 1.607 1.521 Y 1 A A P O5' DA DA 7 7 0.065 0.010 1.593 1.658 N 1 A A O4' C4' DA DA 7 7 -0.066 0.010 1.446 1.380 N 0.1470000 2.150 8.000 931 1 1.000 TR isotropic TR isotropic 2.150 8.000 35 196 0 161 0 fix fix 2.150 1D93 2320 1378 1 refinement NUCLSQ STRUCTURAL VARIATION IN D(CTCTAGAG). IMPLICATIONS FOR PROTEIN-DNA INTERACTIONS 1 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 8 A N1 DG 8 7_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 8 A O6 DG 8 7_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 8 A N2 DG 8 7_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 7_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 7_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 6 A N1 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 6 A O6 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 6 A N2 DG 6 7_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 5 A N1 DA 5 7_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 5 A N6 DA 5 7_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 4 A N3 DT 4 7_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 4 A O4 DT 4 7_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 3 A N3 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 3 A O2 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 3 A N4 DC 3 7_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 7_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 7_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 A DC 1 A N3 DC 1 7_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 A DC 1 A O2 DC 1 7_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 A DC 1 A N4 DC 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 1D93 PDB 1 1D93 1 8 1D93 1 8 1D93 A 1 1 8 96 P 43 21 2