0.028653 0.000000 0.000000 0.000000 0.025543 0.000000 0.000000 0.000000 0.048450 0.00000 0.00000 0.00000 Cruse, W.B.T. Salisbury, S.A. Brown, T. Cosstick, R. Eckstein, F. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 34.900 39.150 20.640 C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C9 H14 N3 O6 P S 323.263 n 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C N 17 N C N 18 N O N 19 N N N 20 N C N 21 N N N 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N H N 40 N H N 41 N N N 42 N C N 43 N N N 44 N C N 45 N C N 46 N C N 47 N O N 48 N N N 49 R C N 50 N C N 51 S C N 52 R C N 53 N O N 54 N O N 55 N C N 56 N O N 57 N P N 58 N O N 59 N S N 60 N O N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing N 29 N sing Y 30 N doub N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N doub N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 192 891 905 10.1016/0022-2836(86)90035-5 3108513 Chiral phosphorothioate analogues of B-DNA. The crystal structure of Rp-d[Gp(S)CpGp(S)CpGp(S)C]. 1986 10.2210/pdb1d97/pdb pdb_00001d97 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 291.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 1858.403 DNA (5'-D(RP*GP*(SC)P*GP*(SC)P*GP*(SC))-3') 2 syn polymer 18.015 water 72 nat water no yes (DG)(SC)(DG)(SC)(DG)(SC) GCGCGC A,B polydeoxyribonucleotide n n n n n n 1.90 35.16 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 287.00K 287.00 WATER 1 ISOPROPANOL 1 NA CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 4.136 1 19 A 1 B 12 -1.113 A_DG1:SC12_B 1 -9.904 -0.350 0.370 -0.012 -4.777 1 19 A 2 B 11 -2.486 A_SC2:DG11_B 2 3.557 -0.254 0.109 -0.293 3.446 1 19 A 3 B 10 -5.981 A_DG3:SC10_B 3 -13.676 0.248 0.412 -0.226 0.564 1 19 A 4 B 9 -1.847 A_SC4:DG9_B 4 -8.339 0.387 0.204 -0.288 1.859 1 19 A 5 B 8 0.687 A_DG5:SC8_B 5 -9.318 0.000 0.152 -0.164 -7.715 1 19 A 6 B 7 0.040 A_SC6:DG7_B 6 -5.203 -0.119 0.324 -0.231 3.730 37.300 A A 1 2 2.193 B B 12 11 3.665 1.401 0.900 0.360 AA_DG1SC2:DG11SC12_BB 1 2.722 -4.261 37.179 0.352 -0.999 3.339 36.399 A A 2 3 -3.218 B B 11 10 3.291 -2.006 -1.200 0.896 AA_SC2DG3:SC10DG11_BB 2 -3.633 5.828 36.170 1.718 1.408 3.549 38.594 A A 3 4 -2.309 B B 10 9 3.495 -1.523 0.980 0.692 AA_DG3SC4:DG9SC10_BB 3 4.137 -6.273 38.351 1.250 -0.931 3.408 31.463 A A 4 5 -1.827 B B 9 8 3.388 -0.990 -0.895 0.546 AA_SC4DG5:SC8DG9_BB 4 -1.547 2.854 31.410 1.200 1.350 3.547 37.184 A A 5 6 -1.461 B B 8 7 3.590 -0.931 1.196 -0.382 AA_DG5SC6:DG7SC8_BB 5 -1.550 2.432 37.141 -0.464 -2.101 chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag BNL Y NDB 1992-10-17 REL HOH water HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 17 2 HOH HOH 17 A HOH 21 2 HOH HOH 21 A HOH 25 2 HOH HOH 25 A HOH 27 2 HOH HOH 27 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 41 2 HOH HOH 41 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 65 2 HOH HOH 65 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 71 2 HOH HOH 71 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 76 2 HOH HOH 76 A HOH 78 2 HOH HOH 78 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 84 2 HOH HOH 84 A HOH 16 2 HOH HOH 16 B HOH 18 2 HOH HOH 18 B HOH 19 2 HOH HOH 19 B HOH 20 2 HOH HOH 20 B HOH 22 2 HOH HOH 22 B HOH 23 2 HOH HOH 23 B HOH 24 2 HOH HOH 24 B HOH 26 2 HOH HOH 26 B HOH 28 2 HOH HOH 28 B HOH 31 2 HOH HOH 31 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 36 2 HOH HOH 36 B HOH 39 2 HOH HOH 39 B HOH 40 2 HOH HOH 40 B HOH 42 2 HOH HOH 42 B HOH 48 2 HOH HOH 48 B HOH 49 2 HOH HOH 49 B HOH 50 2 HOH HOH 50 B HOH 51 2 HOH HOH 51 B HOH 52 2 HOH HOH 52 B HOH 53 2 HOH HOH 53 B HOH 54 2 HOH HOH 54 B HOH 55 2 HOH HOH 55 B HOH 56 2 HOH HOH 56 B HOH 57 2 HOH HOH 57 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 62 2 HOH HOH 62 B HOH 63 2 HOH HOH 63 B HOH 64 2 HOH HOH 64 B HOH 66 2 HOH HOH 66 B HOH 69 2 HOH HOH 69 B HOH 70 2 HOH HOH 70 B HOH 72 2 HOH HOH 72 B HOH 75 2 HOH HOH 75 B HOH 77 2 HOH HOH 77 B HOH 82 2 HOH HOH 82 B HOH 83 2 HOH HOH 83 B G 1 n 1 DG 1 A +C 2 n 2 SC 2 A G 3 n 3 DG 3 A +C 4 n 4 SC 4 A G 5 n 5 DG 5 A +C 6 n 6 SC 6 A G 7 n 1 DG 7 B +C 8 n 2 SC 8 B G 9 n 3 DG 9 B +C 10 n 4 SC 10 B G 11 n 5 DG 11 B +C 12 n 6 SC 12 B author_defined_assembly 2 dimeric A SC 2 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE A SC 2 DC A SC 4 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE A SC 4 DC A SC 6 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE A SC 6 DC B SC 8 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE B SC 2 DC B SC 10 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE B SC 4 DC B SC 12 2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE B SC 6 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C4' SC 6 PLANAR 1 B B OP2 O DG HOH 9 36 2.03 1 A A O O HOH HOH 21 37 2.07 1 B B OP1 O DG HOH 11 56 2.12 1 B B O O HOH HOH 53 57 2.13 1 B B O O HOH HOH 28 69 2.13 1 B B OP1 O SC HOH 12 57 2.19 1 B B O4' O DG HOH 7 75 2.19 1 -9.86 1.50 119.60 109.74 A A A OP1 P OP2 DG DG DG 3 3 3 N 1 -4.60 0.70 119.90 115.30 A A A N3 C2 N2 DG DG DG 3 3 3 N 1 -5.55 0.80 105.90 100.35 A A A O4' C1' C2' DG DG DG 5 5 5 N 1 -5.32 0.70 108.00 102.68 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 7.56 1.20 119.70 127.26 A A A C3' O3' P DG DG SC 5 5 6 Y 1 6.96 0.30 108.30 115.26 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 8.30 1.20 119.70 128.00 B B B C3' O3' P DG DG SC 9 9 10 Y 1 -5.11 0.80 105.90 100.79 B B B O4' C1' C2' DG DG DG 11 11 11 N 1 A A OP1 O SC HOH 6 41 1.92 1_555 3_555 1 A A O O HOH HOH 59 79 2.00 1_555 2_454 0.145 2.170 8.000 1327 1 2.000 TR isotropic TR isotropic 2.170 8.000 72 312 6 234 0 fix fix 2.170 25.000 1D97 1954 1 refinement NUCLSQ CHIRAL PHOSPHOROTHIOATE ANALOGUES OF B-DNA: THE CRYSTAL STRUCTURE OF RP-D(GP(S) CPGP(S)CPGP(S)C) 1 N N 1 N N 2 N N 2 N N covale 1.606 both A DG 1 A O3' DG 1 1_555 A SC 2 A P SC 2 1_555 covale 1.572 both A SC 2 A O3' SC 2 1_555 A DG 3 A P DG 3 1_555 covale 1.608 both A DG 3 A O3' DG 3 1_555 A SC 4 A P SC 4 1_555 covale 1.608 both A SC 4 A O3' SC 4 1_555 A DG 5 A P DG 5 1_555 covale 1.606 both A DG 5 A O3' DG 5 1_555 A SC 6 A P SC 6 1_555 covale 1.608 both B DG 7 B O3' DG 1 1_555 B SC 8 B P SC 2 1_555 covale 1.639 both B SC 8 B O3' SC 2 1_555 B DG 9 B P DG 3 1_555 covale 1.613 both B DG 9 B O3' DG 3 1_555 B SC 10 B P SC 4 1_555 covale 1.609 both B SC 10 B O3' SC 4 1_555 B DG 11 B P DG 5 1_555 covale 1.647 both B DG 11 B O3' DG 5 1_555 B SC 12 B P SC 6 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B SC 12 B N3 SC 6 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B SC 12 B O2 SC 6 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B SC 12 B N4 SC 6 1_555 hydrog WATSON-CRICK A SC 2 A N3 SC 2 1_555 B DG 11 B N1 DG 5 1_555 hydrog WATSON-CRICK A SC 2 A N4 SC 2 1_555 B DG 11 B O6 DG 5 1_555 hydrog WATSON-CRICK A SC 2 A O2 SC 2 1_555 B DG 11 B N2 DG 5 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B SC 10 B N3 SC 4 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B SC 10 B O2 SC 4 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B SC 10 B N4 SC 4 1_555 hydrog WATSON-CRICK A SC 4 A N3 SC 4 1_555 B DG 9 B N1 DG 3 1_555 hydrog WATSON-CRICK A SC 4 A N4 SC 4 1_555 B DG 9 B O6 DG 3 1_555 hydrog WATSON-CRICK A SC 4 A O2 SC 4 1_555 B DG 9 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B SC 8 B N3 SC 2 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B SC 8 B O2 SC 2 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B SC 8 B N4 SC 2 1_555 hydrog WATSON-CRICK A SC 6 A N3 SC 6 1_555 B DG 7 B N1 DG 1 1_555 hydrog WATSON-CRICK A SC 6 A N4 SC 6 1_555 B DG 7 B O6 DG 1 1_555 hydrog WATSON-CRICK A SC 6 A O2 SC 6 1_555 B DG 7 B N2 DG 1 1_555 DNA B-DNA, DOUBLE HELIX, MODIFIED, DNA 1D97 PDB 1 1D97 1 6 1D97 1 6 1D97 A 1 1 6 7 12 1D97 7 12 1D97 B 1 1 6 19 P 21 21 21