1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Oh, D.
Kim, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
DK
J.Pept.Res.
JPERFA
2150
1397-002X
53
578
589
10.1034/j.1399-3011.1999.00067.x
10424354
NMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides.
1999
10.2210/pdb1d9j/pdb
pdb_00001d9j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2411.050
CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
1
syn
polymer
no
yes
KWKLFKKIGIGKFLHSAKKF(NH2)
KWKLFKKIGIGKFLHSAKKFX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1999-11-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Solution Structure of Cecropin A(1-8)-Magainin 2 hybrid peptide analogue (Deletion GIG sequence from CA-MA)
Solution Structure of Cecropin A(1-8)-Magainin 2(1-12) hybrid peptide analogue (Substitution GIG sequence of CA-MA to Pro)
Solution Structure of Cecropin A(1-8)-Magainin 2(1-12) hybrid peptide analogue (Substitution GIG sequence of CA-MA to Pro)
Solution Structure of Cecropin A(1-8)-Magainin 2(1-12) hybrid peptide analogue (Substitution Trp2 of CA-MA to Leu)
RCSB
Y
RCSB
1999-10-28
REL
REL
THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE FOR THIS PEPTIDE IS A HYBRID OF SEQUENCES WHICH OCCUR NATURALLY IN HYALOPHORA CECROPIA (CECROPIA MOTH) AND XENOPUS LAEVIS (AFRICAN CLAWED FROG)
sample
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.
structures with the lowest energy
50
20
2D NOESY
2D NOESY
DQF-COSY
4.06
1
atm
298
K
HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
2MM PEPTIDE; 90MM DPC MICELLES; 90% H2O, 10% D2O
2MM PEPTIDE; 90MM DPC MICELLES; D2O
collection
XwinNMR
2.5
processing
Felix
95.0
data analysis
Felix
95.0
BRUNGER
refinement
X-PLOR
3.851
400
Bruker
AVANCE
600
Bruker
AMX
LYS
1
n
1
LYS
1
A
TRP
2
n
2
TRP
2
A
LYS
3
n
3
LYS
3
A
LEU
4
n
4
LEU
4
A
PHE
5
n
5
PHE
5
A
LYS
6
n
6
LYS
6
A
LYS
7
n
7
LYS
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
ILE
10
n
10
ILE
10
A
GLY
11
n
11
GLY
11
A
LYS
12
n
12
LYS
12
A
PHE
13
n
13
PHE
13
A
LEU
14
n
14
LEU
14
A
HIS
15
n
15
HIS
15
A
SER
16
n
16
SER
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
LYS
19
n
19
LYS
19
A
PHE
20
n
20
PHE
20
A
NH2
21
n
21
NH2
21
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
O
H
ILE
PHE
10
13
1.58
6
A
A
O
H
LYS
LYS
3
6
1.49
10
A
A
O
H
SER
LYS
16
19
1.59
17
A
A
O
H
ILE
LEU
10
14
1.56
2
A
TRP
2
34.15
35.86
2
A
LYS
6
-58.14
-8.70
2
A
LYS
7
-162.86
30.23
4
A
TRP
2
-161.40
-165.41
4
A
LYS
7
-147.44
35.05
5
A
LYS
6
-38.16
-26.64
5
A
LYS
7
-152.79
54.25
5
A
ILE
10
-165.81
-45.50
6
A
LEU
4
-38.37
-30.03
10
A
ILE
10
-162.97
-43.14
11
A
ILE
10
-144.87
-41.05
15
A
TRP
2
-172.42
-154.30
15
A
LYS
3
-37.17
-28.95
16
A
TRP
2
-153.86
-159.90
17
A
TRP
2
-158.22
-151.44
17
A
LYS
3
-48.25
-18.19
17
A
ILE
10
-156.06
-39.86
18
A
TRP
2
70.62
-156.58
18
A
LYS
3
-39.84
-24.80
19
A
ILE
10
-148.86
-43.59
20
A
TRP
2
-147.57
34.97
20
A
ILE
10
-146.43
-71.51
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE
1
N
N
A
TRP
2
A
TRP
2
HELX_P
A
ILE
8
A
ILE
8
5
1
7
A
HIS
15
A
HIS
15
HELX_P
A
LYS
19
A
LYS
19
5
2
5
covale
1.306
both
A
PHE
20
A
C
PHE
20
1_555
A
NH2
21
A
N
NH2
21
1_555
ANTIMICROBIAL PROTEIN
HELIX-HINGE-HELIX, ANTIMICROBIAL PROTEIN
CECA_HYACE
UNP
1
P01507
MAGA_XENLA
UNP
1
P11006
27
34
1D9J
1
8
P01507
A
1
1
8
129
140
1D9J
9
20
P11006
A
2
9
20
BINDING SITE FOR RESIDUE NH2 A 21
A
NH2
21
Software
1
A
PHE
20
A
PHE
20
1
1_555
1
P 1