1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Oh, D.
Kim, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
DK
J.Pept.Res.
JPERFA
2150
1397-002X
53
578
589
10.1034/j.1399-3011.1999.00067.x
10424354
NMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides.
1999
10.2210/pdb1d9m/pdb
pdb_00001d9m
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2280.903
CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE
1
man
polymer
no
yes
KWKLFKKIPKFLHSAKKF(NH2)
KWKLFKKIPKFLHSAKKFX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
African clawed frog, cecropia moth
Xenopus, Hyalophora
,
,
sample
MEMBRANE
8355,7123
Xenopus laevis, Hyalophora cecropia
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1999-11-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1D9J CONTAINS THE ORIGINAL CA-MA HYBRID PEPTIDE
1D9L CONTAINS THE ANALOGUE OF CA-MA HYBRID PEPTIDE(P1:GIG DELETED)
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE (SUBSTITUTION GIG SEQUENCE OF CA-MA TO PRO)
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE (SUBSTITUTION TRP2 OF CA-MA TO LEU)
RCSB
Y
RCSB
1999-10-28
REL
REL
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.
structures with the lowest energy
50
20
2D NOESY
DQF-COSY
2D NOESY
2D NOESY
2D NOESY
4.78
1
atm
303
K
4.78
1
atm
298
K
4.78
1
atm
318
K
HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
2MM PEPTIDE; 90MM DPC MICELLES; 90% H2O, 10% D2O
2MM PEPTIDE; 90MM DPC MICELLES; D2O
collection
XwinNMR
2.5
processing
Felix
95.0
data analysis
Felix
95.0
BRUNGER
refinement
X-PLOR
3.851
400
Bruker
AVANCE
600
Bruker
AMX
LYS
1
n
1
LYS
1
A
TRP
2
n
2
TRP
2
A
LYS
3
n
3
LYS
3
A
LEU
4
n
4
LEU
4
A
PHE
5
n
5
PHE
5
A
LYS
6
n
6
LYS
6
A
LYS
7
n
7
LYS
7
A
ILE
8
n
8
ILE
8
A
PRO
9
n
9
PRO
9
A
LYS
10
n
10
LYS
10
A
PHE
11
n
11
PHE
11
A
LEU
12
n
12
LEU
12
A
HIS
13
n
13
HIS
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
LYS
17
n
17
LYS
17
A
PHE
18
n
18
PHE
18
A
NH2
19
n
19
NH2
19
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
O
H
LYS
LYS
3
6
1.59
9
A
A
O
H
LEU
ALA
12
15
1.51
11
A
A
O
H
LEU
ALA
12
15
1.50
11
A
A
O
H
LYS
HIS
10
13
1.55
17
A
A
O
HN1
ALA
NH2
15
19
1.55
19
A
A
O
H
LYS
LYS
3
6
1.50
1
A
PRO
9
-66.64
56.07
2
A
TRP
2
-155.82
-95.08
3
A
TRP
2
-165.38
-122.16
3
A
PRO
9
-71.27
46.20
5
A
TRP
2
-147.37
21.77
5
A
LYS
7
-104.81
67.18
8
A
TRP
2
-165.33
62.32
8
A
PRO
9
-78.96
44.44
10
A
TRP
2
-161.17
-70.64
10
A
PRO
9
-69.21
96.14
11
A
TRP
2
-115.26
-158.73
11
A
PRO
9
-68.28
83.64
12
A
ILE
8
-44.46
103.88
13
A
TRP
2
-158.21
-138.36
14
A
TRP
2
-135.03
-72.86
15
A
TRP
2
-162.82
71.45
15
A
LYS
7
-152.38
32.35
16
A
LYS
10
-84.35
33.68
18
A
LYS
7
-149.82
42.78
19
A
TRP
2
-140.83
-117.08
19
A
LYS
3
-44.22
-98.23
19
A
LEU
4
-44.53
-19.77
19
A
PRO
9
-65.10
89.34
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE(P2)
1
N
N
A
TRP
2
A
TRP
2
HELX_P
A
LYS
7
A
LYS
7
5
1
6
A
LYS
10
A
LYS
10
HELX_P
A
LYS
16
A
LYS
16
1
2
7
covale
1.305
both
A
PHE
18
A
C
PHE
18
1_555
A
NH2
19
A
N
NH2
19
1_555
MEMBRANE PROTEIN
HELIX-HINGE-HELIX, MEMBRANE PROTEIN
CECA_HYACE
UNP
1
P01507
MAGA_XENLA
UNP
1
P11006
27
34
1D9M
1
8
P01507
A
1
1
8
223
232
1D9M
9
18
P11006
A
2
9
18
BINDING SITE FOR RESIDUE NH2 A 19
A
NH2
19
Software
2
A
ALA
15
A
ALA
15
2
1_555
A
PHE
18
A
PHE
18
2
1_555
1
P 1